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Zhang H, Lin W, Ma R, Zang Y, Hou K, Xu Z, Xi X, Zhang W, Tang S, Liang X, Sun Y, Shen C. Fungal endophytes of Taxus species and regulatory effect of two strains on taxol synthesis. BMC Microbiol 2024; 24:291. [PMID: 39097685 PMCID: PMC11297650 DOI: 10.1186/s12866-024-03445-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Accepted: 07/26/2024] [Indexed: 08/05/2024] Open
Abstract
BACKGROUND Taxol, derived from Taxus trees, is a valuable natural resource for the development of anticancer drugs. Endophytic fungi from Taxus trees are a promising alternative source of Taxol. However, the impact of plant-endophytic microbial interaction on the host's Taxol biosynthesis is largely unknown. RESULTS In the current study, the diversity of endophytic fungi in three different Taxus species was analyzed using Internal Transcribed Spacer sequencing. A total of 271 Operational Taxonomic Units (OTUs) were identified, grouping into 2 phyla, 8 classes, 16 orders, 19 families, and 19 genera. Alpha and beta diversity analysis indicated significant differences in endophytic fungal communities among the various Taxus trees. At the genus level, Alternaria and Davidiella were predominantly found in T. mairei and T. media, respectively. By utilizing a previously published dataset, a Pearson correlation analysis was conducted to predict the taxol biosynthesis-related fungal genera. Following screening, two isolates of Alternaria (L7 and M14) were obtained. Effect of inoculation with Alternaria isolates on the gene expression and metabolite accumulation of T. mairei was determined by transcriptomic and untargeted metabolomic studies. The co-inoculation assay suggests that the two Alternaria isolates may have a negative regulatory effect on taxol biosynthesis by influencing hormone signaling pathways. CONCLUSION Our findings will serve as a foundation for advancing the production and utilization of Taxus and will also aid in screening endophytic fungi related to taxol production.
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Affiliation(s)
- Hongshan Zhang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
- Kharkiv Institute, Hangzhou Normal University, Hangzhou, 311121, China
| | - Wanting Lin
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Ruoyun Ma
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Yue Zang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Kailin Hou
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Zhen Xu
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Xiaoyun Xi
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Weiting Zhang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Shini Tang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Xueshuang Liang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China
| | - Yiming Sun
- College of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China.
| | - Chenjia Shen
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
- Kharkiv Institute, Hangzhou Normal University, Hangzhou, 311121, China.
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Yuan L, Zhao T, Yang J, Wu N, Zhang P, Zhang H, Xu T. Characteristics of the Perianthic Endophytic Fungal Communities of the Rare Horticultural Plant Lirianthe delavayi and Their Changes under Artificial Cultivation. Microorganisms 2024; 12:1491. [PMID: 39065259 PMCID: PMC11278761 DOI: 10.3390/microorganisms12071491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2024] [Revised: 07/18/2024] [Accepted: 07/19/2024] [Indexed: 07/28/2024] Open
Abstract
Flower endophytic fungi play a major role in plant reproduction, stress resistance, and growth and development. However, little is known about how artificial cultivation affects the endophytic fungal community found in the tepals of rare horticultural plants. In this research, we used high-throughput sequencing technology combined with bioinformatics analysis to reveal the endophytic fungal community of tepals in Lirianthe delavayi and the effects of artificial cultivation on the community composition and function of these plants, using tepals of L. delavayi from wild habitat, cultivated campus habitat, and cultivated field habitat as research objects. The results showed that the variety of endophytic fungi in the tepals of L. delavayi was abundant, with a total of 907 Amplicon sequencing variants (ASVs) obtained from all the samples, which were further classified into 4 phyla, 23 classes, 51 orders, 97 families, 156 genera, and 214 species. We also found that artificial cultivation had a significant impact on the community composition of endophytic fungi. Although there was no significant difference at the phylum level, with Ascomycota and Basidiomycota being the main phyla, there were significant differences in dominant and unique genera. Artificial cultivation has led to the addition of new pathogenic fungal genera, such as Phaeosphaeria, Botryosphaeria, and Paraconiothyrium, increasing the risk of disease in L. delavayi. In addition, the abundance of the endophytic fungus Rhodotorula, which is typical in plant reproductive organs, decreased. Artificial cultivation also altered the metabolic pathways of endophytic fungi, decreasing their ability to resist pests and diseases and reducing their ability to reproduce. A comparison of endophytic fungi in tepals and leaves revealed significant differences in community composition and changes in the endophytic diversity caused by artificial cultivation. To summarize, our results indicate that endophytic fungi in the tepals of L. delavayi mainly consist of pathogenic and saprophytic fungi. Simultaneously, artificial cultivation introduces a great number of pathogenic fungi that alter the metabolic pathways associated with plant resistance to disease and pests, as well as reproduction, which can increase the risk of plant disease and reduce plant reproductive capacity. Our study provides an important reference for the conservation and breeding of rare horticultural plants.
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Affiliation(s)
- Lang Yuan
- School of Ecology and Environmental Science, Yunnan University, Kunming 650106, China (J.Y.)
| | - Tongxing Zhao
- School of Ecology and Environmental Science, Yunnan University, Kunming 650106, China (J.Y.)
| | - Jing Yang
- School of Ecology and Environmental Science, Yunnan University, Kunming 650106, China (J.Y.)
| | - Nannan Wu
- School of Ecology and Environmental Science, Yunnan University, Kunming 650106, China (J.Y.)
| | - Pinzheng Zhang
- School of Ecology and Environmental Science, Yunnan University, Kunming 650106, China (J.Y.)
| | - Hanbo Zhang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, Kunming 650106, China
| | - Tao Xu
- School of Ecology and Environmental Science, Yunnan University, Kunming 650106, China (J.Y.)
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Achilonu CC, Gryzenhout M, Marais GJ, Ghosh S. Differential Detection of Alternaria alternata Haplotypes Isolated from Carya illinoinensis Using PCR-RFLP Analysis of Alt a1 Gene Region. Genes (Basel) 2023; 14:genes14051115. [PMID: 37239475 DOI: 10.3390/genes14051115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 05/16/2023] [Accepted: 05/18/2023] [Indexed: 05/28/2023] Open
Abstract
Alternaria black spot disease on pecan is caused by the opportunistic pathogen Alternaria alternata and poses a serious threat to the local South African and global pecan industry. Several diagnostic molecular marker applications have been established and used in the screening of various fungal diseases worldwide. The present study investigated the potential for polymorphism within samples of A. alternata isolates obtained from eight different geographical locations in South Africa. Pecan (Carya illinoinensis) leaves, shoots, and nuts-in-shuck with Alternaria black spot disease were sampled, and 222 A. alternata isolates were retrieved. For rapid screening to identify Alternaria black spot pathogens, polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of the Alternaria major allergen (Alt a1) gene region was used, followed by the digestion of the amplicons with HaeIII and HinfI endonucleases. The assay resulted in five (HaeIII) and two (HinfI) band patterns. Unique banding patterns from the two endonucleases showed the best profile and isolates were grouped into six clusters using a UPGMA (unweighted pair group method with arithmetic averages) distance matrix (Euclidean) dendrogram method on R-Studio. The analysis confirmed that the genetic diversity of A. alternata does not depend on host tissues or the pecan cultivation region. The grouping of selected isolates was confirmed by DNA sequence analysis. The Alt a1 phylogeny corroborated no speciation within the dendrogram groups and showed 98-100% bootstrap similarity. This study reports the first documented rapid and reliable technique for routine screening identification of pathogens causing Alternaria black spot in South Africa.
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Affiliation(s)
- Conrad Chibunna Achilonu
- Department of Plant Sciences, Division of Plant Pathology, Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontein 9300, South Africa
| | - Marieka Gryzenhout
- Department of Genetics, Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontein 9300, South Africa
| | - Gert Johannes Marais
- Department of Plant Sciences, Division of Plant Pathology, Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontein 9300, South Africa
| | - Soumya Ghosh
- Department of Genetics, Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontein 9300, South Africa
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Nan J, Ling Y, An J, Wang T, Chai M, Fu J, Wang G, Yang C, Yang Y, Han B. Genome resequencing reveals independent domestication and breeding improvement of naked oat. Gigascience 2022; 12:giad061. [PMID: 37524540 PMCID: PMC10390318 DOI: 10.1093/gigascience/giad061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Revised: 05/04/2023] [Accepted: 07/06/2023] [Indexed: 08/02/2023] Open
Abstract
As an important cereal crop, common oat, has attracted more and more attention due to its healthy nutritional components and bioactive compounds. Here, high-depth resequencing of 115 oat accessions and closely related hexaploid species worldwide was performed. Based on genetic diversity and linkage disequilibrium analysis, it was found that hulled oat (Avena sativa) experienced a more severe bottleneck than naked oat (Avena sativa var. nuda). Combined with the divergence time of ∼51,200 years ago, the previous speculation that naked oat was a variant of hulled oat was rejected. It was found that the common segments that hulled oat introgressed to naked oat cultivars contained 444 genes, mainly enriched in photosynthetic efficiency-related pathways. Selective sweeps during environmental adaptation and breeding improvement were identified in the naked oat genome. Candidate genes associated with smut resistance and the days to maturity phenotype were also identified. Our study provides genomic resources and new insights into naked oat domestication and breeding.
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Affiliation(s)
- Jinsheng Nan
- Key Laboratory of Germplasm Innovation and Utilization of Triticeae Crops at Universities of Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot 010010, China
| | - Yu Ling
- Key Laboratory of Germplasm Innovation and Utilization of Triticeae Crops at Universities of Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot 010010, China
| | - Jianghong An
- Key Laboratory of Germplasm Innovation and Utilization of Triticeae Crops at Universities of Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot 010010, China
| | - Ting Wang
- Key Laboratory of Germplasm Innovation and Utilization of Triticeae Crops at Universities of Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot 010010, China
| | - Mingna Chai
- Key Laboratory of Germplasm Innovation and Utilization of Triticeae Crops at Universities of Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot 010010, China
| | - Jun Fu
- Beijing 8omics Gene Technology Co. Ltd, Beijing 100080, China
| | - Gaochao Wang
- Beijing 8omics Gene Technology Co. Ltd, Beijing 100080, China
| | - Cai Yang
- Inner Mongolia Guomai Agriculture Co. Ltd, Xilingol League, Xilinhot City 026005, China
| | - Yan Yang
- Key Laboratory of Germplasm Innovation and Utilization of Triticeae Crops at Universities of Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot 010010, China
| | - Bing Han
- Key Laboratory of Germplasm Innovation and Utilization of Triticeae Crops at Universities of Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot 010010, China
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Pinheiro M, Iwase CHT, Bertozzi BG, Caramês ETS, Carnielli-Queiroz L, Langaro NC, Furlong EB, Correa B, Rocha LO. Survey of Freshly Harvested Oat Grains from Southern Brazil Reveals High Incidence of Type B Trichothecenes and Associated Fusarium Species. Toxins (Basel) 2021; 13:855. [PMID: 34941693 PMCID: PMC8706650 DOI: 10.3390/toxins13120855] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 11/24/2021] [Accepted: 11/27/2021] [Indexed: 11/16/2022] Open
Abstract
The current study investigated the fungal diversity in freshly harvested oat samples from the two largest production regions in Brazil, Paraná (PR) and Rio Grande do Sul (RS), focusing primarily on the Fusarium genus and the presence of type B trichothecenes. The majority of the isolates belonged to the Fusarium sambucinum species complex, and were identified as F. graminearum sensu stricto (s.s.), F. meridionale, and F. poae. In the RS region, F. poae was the most frequent fungus, while F. graminearum s.s. was the most frequent in the PR region. The F. graminearum s.s. isolates were 15-ADON genotype, while F. meridionale and F. poae were NIV genotype. Mycotoxin analysis revealed that 92% and 100% of the samples from PR and RS were contaminated with type B trichothecenes, respectively. Oat grains from PR were predominantly contaminated with DON, whereas NIV was predominant in oats from RS. Twenty-four percent of the samples were contaminated with DON at levels higher than Brazilian regulations. Co-contamination of DON, its derivatives, and NIV was observed in 84% and 57.7% of the samples from PR and RS, respectively. The results provide new information on Fusarium contamination in Brazilian oats, highlighting the importance of further studies on mycotoxins.
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Affiliation(s)
- Mariana Pinheiro
- Department of Food Science and Nutrition, Food Engineering Faculty, State University of Campinas—UNICAMP, Campinas 13083-862, Brazil; (M.P.); (C.H.T.I.); (B.G.B.); (E.T.S.C.)
| | - Caio H. T. Iwase
- Department of Food Science and Nutrition, Food Engineering Faculty, State University of Campinas—UNICAMP, Campinas 13083-862, Brazil; (M.P.); (C.H.T.I.); (B.G.B.); (E.T.S.C.)
| | - Bruno G. Bertozzi
- Department of Food Science and Nutrition, Food Engineering Faculty, State University of Campinas—UNICAMP, Campinas 13083-862, Brazil; (M.P.); (C.H.T.I.); (B.G.B.); (E.T.S.C.)
| | - Elem T. S. Caramês
- Department of Food Science and Nutrition, Food Engineering Faculty, State University of Campinas—UNICAMP, Campinas 13083-862, Brazil; (M.P.); (C.H.T.I.); (B.G.B.); (E.T.S.C.)
| | - Lorena Carnielli-Queiroz
- Institute of Biomedical Sciences, University of Sao Paulo, São Paulo 05508-000, Brazil; (L.C.-Q.); (B.C.)
| | - Nádia C. Langaro
- Faculty of Agronomy and Veterinary Medicine, University of Passo Fundo, Passo Fundo 99042-800, Brazil;
| | - Eliana B. Furlong
- School of Chemistry and Food, Federal University of Rio Grande, Rio Grande 96203-900, Brazil;
| | - Benedito Correa
- Institute of Biomedical Sciences, University of Sao Paulo, São Paulo 05508-000, Brazil; (L.C.-Q.); (B.C.)
| | - Liliana O. Rocha
- Department of Food Science and Nutrition, Food Engineering Faculty, State University of Campinas—UNICAMP, Campinas 13083-862, Brazil; (M.P.); (C.H.T.I.); (B.G.B.); (E.T.S.C.)
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Zheng M, Li R, Wang Y, Yang F, Xu C. An efficient strategy to improve enzymatic hydrolysis of naked oat straw pretreated by Irpex lacteus. Bioprocess Biosyst Eng 2021; 45:227-236. [PMID: 34626233 DOI: 10.1007/s00449-021-02652-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 10/03/2021] [Indexed: 11/29/2022]
Abstract
The objective of this study was aiming at developing an efficient strategy to promote enzymatic hydrolysis of naked oat straw and deciphering the potential mechanism. Irpex lacteus and Phlebia acerina were employed to inoculated on the naked oat straw for 4 weeks which the changes of fiber components, fermentation losses, lignin-degrading enzymes production pattern were determined weekly. Furthermore, the 72 h enzymatic hydrolysis of ultimately fermented naked oat straw were also evaluated. The acid detergent lignin was degraded at about 25% along with the moderate dry matter and cellulose loss which both showed selective degradation. The lignin-degrading enzymes production patterns of the two fungi were different which lignin peroxidase was not detected in Irpex lacteus treatment. In addition, the activities of cellulolytic enzymes were higher in Phlebia acerina treatment. After 72 h enzymatic hydrolysis, the reducing sugar content and hydrolysis yield pretreated by Irpex lacteus was 12.92 g/L and 69.49%, respectively. It was much higher than that in sterilized substrate and Phlebia acerina treatment. Meanwhile, the hydrolysis yields of glucose, sum of xylose and arabinose were all improved by Irpex lacteus which were 30.96% and 25.62%, respectively, and showed significant enhancements compared to control and Phlebia acerina treatment. Irpex lacteus is one of effective white rot fungi which could promote the enzymatic hydrolysis of naked oat straw obviously.
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Affiliation(s)
- Menghu Zheng
- College of Engineering, China Agricultural University, No. 17 Qinghua Donglu, Haidian District, Beijing, 100083, China
| | - Rongrong Li
- College of Engineering, China Agricultural University, No. 17 Qinghua Donglu, Haidian District, Beijing, 100083, China
| | - Yan Wang
- College of Engineering, China Agricultural University, No. 17 Qinghua Donglu, Haidian District, Beijing, 100083, China
| | - Fuyu Yang
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100093, China
| | - Chuncheng Xu
- College of Engineering, China Agricultural University, No. 17 Qinghua Donglu, Haidian District, Beijing, 100083, China.
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