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Streicher JW, Lambert SM, Méndez de la Cruz FR, Martínez-Méndez N, García-Vázquez UO, Nieto Montes de Oca A, Wiens JJ. What Predicts Gene Flow During Speciation? The Relative Roles of Time, Space, Morphology and Climate. Mol Ecol 2024:e17580. [PMID: 39506895 DOI: 10.1111/mec.17580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Revised: 10/12/2024] [Accepted: 10/22/2024] [Indexed: 11/08/2024]
Abstract
The processes that restrict gene flow between populations are fundamental to speciation. Here, we develop a simple framework for studying whether divergence in morphology, climatic niche, time and space contribute to reduced gene flow among populations and species. We apply this framework to a model system involving a clade of spiny lizards (Sceloporus) occurring mostly in northeastern Mexico, which show striking variation in morphology and habitat among closely related species and populations. We developed a new time-calibrated phylogeny for the group using RADseq data from 152 individuals. This phylogeny identified 12 putative species-level clades, including at least two undescribed species. We then estimated levels of gene flow among 21 geographically adjacent pairs of species and populations. We also estimated divergence in morphological and climatic niche variables among these same pairs, along with divergence times and geographic distances. Using Bayesian generalised linear models, we found that gene flow between pairs of lineages is negatively related to divergence time and morphological divergence among them (which are uncorrelated), and not to geographic distance or climatic divergence. The framework used here can be applied to study speciation in many other organisms having genomic data but lacking direct data on reproductive isolation. We also found several other intriguing patterns in this system, including the parallel evolution of a strikingly similar montane blue-red morph from more dull-coloured desert ancestors within two different, nonsister species.
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Affiliation(s)
- Jeffrey W Streicher
- Natural History Museum, London, UK
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, USA
| | - Shea M Lambert
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, USA
| | - Fausto R Méndez de la Cruz
- Laboratorio de Herpetología, Instituto de Biología, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Norberto Martínez-Méndez
- Laboratorio de Bioconservación y Manejo, Departamento de Zoología, Escuela Nacional de Ciencias Biológicas del Instituto Politécnico Nacional, Mexico City, Mexico
| | - Uri Omar García-Vázquez
- Unidad Multidisciplinaria de Investigación, Facultad de Estudios Superiores Zaragoza, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Adrián Nieto Montes de Oca
- Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, USA
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Tarkhnishvili D, Seropian A, Erhardt C, Kachlishvili N, Krammer H, Hein N. How dispersal rates depend on the prey capture strategy: A case study of Georgia's spiders. Ecol Evol 2024; 14:e11372. [PMID: 38742184 PMCID: PMC11089273 DOI: 10.1002/ece3.11372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 04/12/2024] [Accepted: 04/19/2024] [Indexed: 05/16/2024] Open
Abstract
Large-scale barcoding projects help to aggregate information on genetic variability of multiple species throughout their ranges. Comparing DNA sequences of both non-conspecific and conspecific individuals from distant parts of their ranges helps to compare level of genetic isolation-by-distance patterns in different species and adaptive types. We compared mitochondrial CO1 gene sequences of 223 spiders from Georgia (Caucasus), representing 124 species and eight families, with 3097 homological sequences from spiders mostly from Europe, but also from other parts of the World. In most families, a significant isolation-by distance pattern was observed on family level. On species level, a significant isolation-by-distance was observed in 40 species, although this low proportion is most likely related to a lack of data. Simultaneously, remarkable differences in spatial structure were shown for different species. Although the majority of the studied species have a broad western Palearctic range, web-building spiders from families Araneidae, Theridiidae, and Linyphiidae are less isolated spatially than flower spiders (Thomisidae), jumping spiders (Salticidae), wolf spiders (Lycosidae), sac spiders (Clubionidae), and ground spiders (Gnaphosidae). This pattern is related with more common ballooning in web building than in actively hunting spiders, which commonly remain isolated since preglacial time. Ground spiders build the most isolated populations in the Caucasus.
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Affiliation(s)
| | | | - Christoph Erhardt
- LIB – Leibniz Institute for the Analysis of Biodiversity Change, Biodiversity CenterZoological Research Museum Alexander KoenigBonnGermany
| | | | - Hans‐Joachim Krammer
- LIB – Leibniz Institute for the Analysis of Biodiversity Change, Biodiversity CenterZoological Research Museum Alexander KoenigBonnGermany
| | - Nils Hein
- LIB – Leibniz Institute for the Analysis of Biodiversity Change, Biodiversity CenterZoological Research Museum Alexander KoenigBonnGermany
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Crespo LC, Silva I, Enguídanos A, Cardoso P, Arnedo M. Island hoppers: Integrative taxonomic revision of Hogna wolf spiders (Araneae, Lycosidae) endemic to the Madeira islands with description of a new species. Zookeys 2022; 1086:84-135. [PMID: 35221746 PMCID: PMC8866340 DOI: 10.3897/zookeys.1086.68015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 12/13/2021] [Indexed: 11/12/2022] Open
Abstract
Because of their ability for aerial dispersal using silk and preference for open habitats, many wolf spiders are formidable colonisers. Pioneering arachnologists were already aware of the large and colourful wolf spiders in the Madeira archipelago, currently included in the genus Hogna Simon, 1885. The origins were investigated and species boundaries of Madeiran Hogna examined by integrating target-gene and morphological information. A multi-locus phylogenetic analysis of a thorough sampling across wolf-spider diversity suggested a single origin of Madeiran endemics, albeit with low support. Divergence time estimation traced back their origin to the late Miocene, a time of major global cooling that drove the expansion of grasslands and the associated fauna. Morphological examination of types and newly collected material revealed a new species, hereby described as H.isambertoi Crespo, sp. nov. Additionally, H.blackwalli is revalidated and three new synonymies are proposed, namely H.biscoitoi Wunderlich, 1992, junior synonym of H.insularum Kulczynski, 1899, H.schmitzi Wunderlich, 1992, junior synonym of H.maderiana (Walckenaer, 1837), and Arctosamaderana Roewer, 1960 junior synonym of H.ferox (Lucas, 1838). Species delimitation analyses of mitochondrial and nuclear markers provided additional support for morphological delineations. The species pair H.insularum and H.maderiana, however, constituted an exception: the lack of exclusive haplotypes in the examined markers, along with the discovery of intermediate forms, pointed to hybridisation between these two species as reported in other congeneric species on islands. Finally, the conservation status of the species is discussed and candidates for immediate conservation efforts are identified.
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Affiliation(s)
- Luís C Crespo
- Department of Evolutionary Biology, Ecology and Environmental Sciences (Arthropods), Biodiversity Research Institute (IRBio), Universitat de Barcelona, Av. Diagonal 643, 08028 Barcelona, Spain Universitat de Barcelona Barcelona Spain.,Laboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History (LUOMUS), University of Helsinki, P.O. Box 17, 00014 Helsinki, Finland University of Helsinki Helsinki Finland
| | - Isamberto Silva
- Instituto das Florestas e Conservação da Natureza IP-RAM, Jardim Botânico da Madeira, Caminho do Meio, Bom Sucesso, 9064-512, Funchal, Portugal Instituto das Florestas e Conservação da Natureza IP-RAM, Jardim Botânico da Madeira Funchal Portugal
| | - Alba Enguídanos
- Department of Evolutionary Biology, Ecology and Environmental Sciences (Arthropods), Biodiversity Research Institute (IRBio), Universitat de Barcelona, Av. Diagonal 643, 08028 Barcelona, Spain Universitat de Barcelona Barcelona Spain
| | - Pedro Cardoso
- Laboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History (LUOMUS), University of Helsinki, P.O. Box 17, 00014 Helsinki, Finland University of Helsinki Helsinki Finland
| | - Miquel Arnedo
- Department of Evolutionary Biology, Ecology and Environmental Sciences (Arthropods), Biodiversity Research Institute (IRBio), Universitat de Barcelona, Av. Diagonal 643, 08028 Barcelona, Spain Universitat de Barcelona Barcelona Spain
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Phylogeny and secondary sexual trait evolution in Schizocosa wolf spiders (Araneae, Lycosidae) shows evidence for multiple gains and losses of ornamentation and species delimitation uncertainty. Mol Phylogenet Evol 2022; 169:107397. [PMID: 35031456 DOI: 10.1016/j.ympev.2022.107397] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 12/27/2021] [Accepted: 12/27/2021] [Indexed: 12/18/2022]
Abstract
Members of the Nearctic spider genus Schizocosa Chamberlin, 1904 have garnered much attention in behavioral studies and over many decades, a number of species have developed as model systems for investigating patterns of sexual selection and multimodal communication. Many of these studies have employed a comparative approach using putative, but not rigorously tested, sister species pairs that have distinctive morphological traits and attendant behaviors. Despite past emphasis on the efficacy of these presumably comparative-based studies of closely related species, generating a robust phylogenetic hypothesis for Schizocosa has been an ongoing challenge. Here, we apply a phylogenomic approach using anchored hybrid enrichment to generate a data set comprising over 400 loci representing a comprehensive taxonomic sample of 23 Nearctic Schizocosa. Our sampling also includes numerous outgroup lycosid genera that allow for a robust evaluation of genus monophyly. Based on analyses using concatenation and coalescent-based methods, we recover a well-supported phylogeny that infers the following: 1) The New World Schizocosa do not form a monophyletic group; 2) Previous hypotheses of North American species require reconsideration along with the composition of species groups; 3) Multiple longstanding model species are not genealogically exclusive and thus are not "good" species; 4) This updated phylogenetic framework establishes a new working paradigm for studying the evolution of characters associated with reproductive communication and mating. Ancestral character state reconstructions show a complex pattern of homoplasy that has likely obfuscated previous attempts to reconstruct relationships and delimit species. Important characters presumably related to sexual selection, such as foreleg pigmentation and dense bristle formation, have undergone repeated gain and loss events, many of which have led to increased morphological divergence between sister-species. Evaluation of these traits in a comparative framework illuminates how sexual selection and natural selection influence character evolution and provides a model for future studies of multimodal communication evolution and function.
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Dong X, Yi W, Zheng C, Zhu X, Wang S, Xue H, Ye Z, Bu W. Species delimitation of rice seed bugs complex: Insights from mitochondrial genomes and ddRAD‐seq data. ZOOL SCR 2021. [DOI: 10.1111/zsc.12523] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Xue Dong
- Institute of Entomology College of Life Sciences Nankai University Tianjin China
| | - Wenbo Yi
- Department of Biology Xinzhou Teachers University Xinzhou China
| | - Chenguang Zheng
- Institute of Entomology College of Life Sciences Nankai University Tianjin China
| | - Xiuxiu Zhu
- Institute of Entomology College of Life Sciences Nankai University Tianjin China
| | - Shujing Wang
- Institute of Entomology College of Life Sciences Nankai University Tianjin China
| | - Huaijun Xue
- Institute of Entomology College of Life Sciences Nankai University Tianjin China
| | - Zhen Ye
- Institute of Entomology College of Life Sciences Nankai University Tianjin China
| | - Wenjun Bu
- Institute of Entomology College of Life Sciences Nankai University Tianjin China
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