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Cao W, Howe BM, Wright DE, Ramanathan S, Rhodes NG, Korfiatis P, Amrami KK, Spinner RJ, Kline TL. Abnormal Brachial Plexus Differentiation from Routine Magnetic Resonance Imaging: An AI-based Approach. Neuroscience 2024; 546:178-187. [PMID: 38518925 DOI: 10.1016/j.neuroscience.2024.03.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 03/11/2024] [Accepted: 03/17/2024] [Indexed: 03/24/2024]
Abstract
Automatic abnormality identification of brachial plexus (BP) from normal magnetic resonance imaging to localize and identify a neurologic injury in clinical practice (MRI) is still a novel topic in brachial plexopathy. This study developed and evaluated an approach to differentiate abnormal BP with artificial intelligence (AI) over three commonly used MRI sequences, i.e. T1, FLUID sensitive and post-gadolinium sequences. A BP dataset was collected by radiological experts and a semi-supervised artificial intelligence method was used to segment the BP (based on nnU-net). Hereafter, a radiomics method was utilized to extract 107 shape and texture features from these ROIs. From various machine learning methods, we selected six widely recognized classifiers for training our Brachial plexus (BP) models and assessing their efficacy. To optimize these models, we introduced a dynamic feature selection approach aimed at discarding redundant and less informative features. Our experimental findings demonstrated that, in the context of identifying abnormal BP cases, shape features displayed heightened sensitivity compared to texture features. Notably, both the Logistic classifier and Bagging classifier outperformed other methods in our study. These evaluations illuminated the exceptional performance of our model trained on FLUID-sensitive sequences, which notably exceeded the results of both T1 and post-gadolinium sequences. Crucially, our analysis highlighted that both its classification accuracies and AUC score (area under the curve of receiver operating characteristics) over FLUID-sensitive sequence exceeded 90%. This outcome served as a robust experimental validation, affirming the substantial potential and strong feasibility of integrating AI into clinical practice.
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Affiliation(s)
- Weiguo Cao
- Department of Radiology, Mayo Clinic, 200 First Street SW, Charlton 1, Rochester, MN 55905, USA
| | - Benjamin M Howe
- Department of Radiology, Mayo Clinic, 200 First Street SW, Charlton 1, Rochester, MN 55905, USA
| | - Darryl E Wright
- Department of Radiology, Mayo Clinic, 200 First Street SW, Charlton 1, Rochester, MN 55905, USA
| | - Sumana Ramanathan
- Department of Radiology, Mayo Clinic, 200 First Street SW, Charlton 1, Rochester, MN 55905, USA
| | - Nicholas G Rhodes
- Department of Radiology, Mayo Clinic, 200 First Street SW, Charlton 1, Rochester, MN 55905, USA
| | - Panagiotis Korfiatis
- Department of Radiology, Mayo Clinic, 200 First Street SW, Charlton 1, Rochester, MN 55905, USA
| | - Kimberly K Amrami
- Department of Radiology, Mayo Clinic, 200 First Street SW, Charlton 1, Rochester, MN 55905, USA
| | - Robert J Spinner
- Department of Neurological Surgery, Mayo Clinic, 200 First Street SW, Gonda 8, Rochester, MN 55905, USA
| | - Timothy L Kline
- Department of Radiology, Mayo Clinic, 200 First Street SW, Charlton 1, Rochester, MN 55905, USA.
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Chang S, Gao Y, Pomeroy MJ, Bai T, Zhang H, Lu S, Pickhardt PJ, Gupta A, Reiter MJ, Gould ES, Liang Z. Exploring Dual-Energy CT Spectral Information for Machine Learning-Driven Lesion Diagnosis in Pre-Log Domain. IEEE TRANSACTIONS ON MEDICAL IMAGING 2023; 42:1835-1845. [PMID: 37022248 PMCID: PMC10238622 DOI: 10.1109/tmi.2023.3240847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
In this study, we proposed a computer-aided diagnosis (CADx) framework under dual-energy spectral CT (DECT), which operates directly on the transmission data in the pre-log domain, called CADxDE, to explore the spectral information for lesion diagnosis. The CADxDE includes material identification and machine learning (ML) based CADx. Benefits from DECT's capability of performing virtual monoenergetic imaging with the identified materials, the responses of different tissue types (e.g., muscle, water, and fat) in lesions at each energy can be explored by ML for CADx. Without losing essential factors in the DECT scan, a pre-log domain model-based iterative reconstruction is adopted to obtain decomposed material images, which are then used to generate the virtual monoenergetic images (VMIs) at selected n energies. While these VMIs have the same anatomy, their contrast distribution patterns contain rich information along with the n energies for tissue characterization. Thus, a corresponding ML-based CADx is developed to exploit the energy-enhanced tissue features for differentiating malignant from benign lesions. Specifically, an original image-driven multi-channel three-dimensional convolutional neural network (CNN) and extracted lesion feature-based ML CADx methods are developed to show the feasibility of CADxDE. Results from three pathologically proven clinical datasets showed 4.01% to 14.25% higher AUC (area under the receiver operating characteristic curve) scores than the scores of both the conventional DECT data (high and low energy spectrum separately) and the conventional CT data. The mean gain >9.13% in AUC scores indicated that the energy spectral-enhanced tissue features from CADxDE have great potential to improve lesion diagnosis performance.
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Affiliation(s)
- Shaojie Chang
- Department of Radiology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Yongfeng Gao
- Department of Radiology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Marc J. Pomeroy
- Departments of Radiology and Biomedical Engineering, Stony Brook University, Stony Brook, NY 11794, USA
| | - Ti Bai
- Department of Radiation Oncology, University of Texas Southwestern Medical Centre, Dallas, TX 75390, USA
| | - Hao Zhang
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, NY 10065, USA
| | - Siming Lu
- Departments of Radiology and Biomedical Engineering, Stony Brook University, Stony Brook, NY 11794, USA
| | - Perry J. Pickhardt
- Department of Radiology, School of Medicine, University of Wisconsin, Madison, WI 53792, USA
| | - Amit Gupta
- Department of Radiology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Michael J. Reiter
- Department of Radiology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Elaine S. Gould
- Department of Radiology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Zhengrong Liang
- Departments of Radiology and Biomedical Engineering, Stony Brook University, Stony Brook, NY 11794, USA
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Cao W, Pomeroy MJ, Liang Z, Abbasi AF, Pickhardt PJ, Lu H. Vector textures derived from higher order derivative domains for classification of colorectal polyps. Vis Comput Ind Biomed Art 2022; 5:16. [PMID: 35699865 PMCID: PMC9198194 DOI: 10.1186/s42492-022-00108-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Accepted: 03/22/2022] [Indexed: 11/10/2022] Open
Abstract
Textures have become widely adopted as an essential tool for lesion detection and classification through analysis of the lesion heterogeneities. In this study, higher order derivative images are being employed to combat the challenge of the poor contrast across similar tissue types among certain imaging modalities. To make good use of the derivative information, a novel concept of vector texture is firstly introduced to construct and extract several types of polyp descriptors. Two widely used differential operators, i.e., the gradient operator and Hessian operator, are utilized to generate the first and second order derivative images. These derivative volumetric images are used to produce two angle-based and two vector-based (including both angle and magnitude) textures. Next, a vector-based co-occurrence matrix is proposed to extract texture features which are fed to a random forest classifier to perform polyp classifications. To evaluate the performance of our method, experiments are implemented over a private colorectal polyp dataset obtained from computed tomographic colonography. We compare our method with four existing state-of-the-art methods and find that our method can outperform those competing methods over 4%-13% evaluated by the area under the receiver operating characteristics curves.
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Affiliation(s)
- Weiguo Cao
- Department of Radiology, State University of New York at Stony Brook, Stony Brook, NY 11794, USA
| | - Marc J Pomeroy
- Department of Radiology, State University of New York at Stony Brook, Stony Brook, NY 11794, USA.,Department of Biomedical Engineering, State University of New York at Stony Brook, Stony Brook, NY 11794, USA
| | - Zhengrong Liang
- Department of Radiology, State University of New York at Stony Brook, Stony Brook, NY 11794, USA. .,Department of Biomedical Engineering, State University of New York at Stony Brook, Stony Brook, NY 11794, USA.
| | - Almas F Abbasi
- Department of Radiology, State University of New York at Stony Brook, Stony Brook, NY 11794, USA
| | - Perry J Pickhardt
- Department of Radiology, University of Wisconsin Medical School, Madison, WI 53705, USA
| | - Hongbing Lu
- Department of Biomedical Engineering, the Fourth Medical University, Xi'an, 710032, Shaanxi, China
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