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Średniawa W, Borzymowska Z, Kondrakiewicz K, Jurgielewicz P, Mindur B, Hottowy P, Wójcik DK, Kublik E. Local contribution to the somatosensory evoked potentials in rat's thalamus. PLoS One 2024; 19:e0301713. [PMID: 38593141 PMCID: PMC11003638 DOI: 10.1371/journal.pone.0301713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 03/19/2024] [Indexed: 04/11/2024] Open
Abstract
Local Field Potential (LFP), despite its name, often reflects remote activity. Depending on the orientation and synchrony of their sources, both oscillations and more complex waves may passively spread in brain tissue over long distances and be falsely interpreted as local activity at such distant recording sites. Here we show that the whisker-evoked potentials in the thalamic nuclei are of local origin up to around 6 ms post stimulus, but the later (7-15 ms) wave is overshadowed by a negative component reaching from cortex. This component can be analytically removed and local thalamic LFP can be recovered reliably using Current Source Density analysis. We used model-based kernel CSD (kCSD) method which allowed us to study the contribution of local and distant currents to LFP from rat thalamic nuclei and barrel cortex recorded with multiple, non-linear and non-regular multichannel probes. Importantly, we verified that concurrent recordings from the cortex are not essential for reliable thalamic CSD estimation. The proposed framework can be used to analyze LFP from other brain areas and has consequences for general LFP interpretation and analysis.
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Affiliation(s)
- Władysław Średniawa
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Zuzanna Borzymowska
- Neurobiology of Emotions Laboratory, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Kacper Kondrakiewicz
- Neurobiology of Emotions Laboratory, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Paweł Jurgielewicz
- AGH University of Science and Technology in Kraków, Faculty of Physics and Applied Computer Science, Krakow, Poland
| | - Bartosz Mindur
- AGH University of Science and Technology in Kraków, Faculty of Physics and Applied Computer Science, Krakow, Poland
| | - Paweł Hottowy
- AGH University of Science and Technology in Kraków, Faculty of Physics and Applied Computer Science, Krakow, Poland
| | - Daniel K. Wójcik
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
- Jagiellonian University, Faculty of Management and Social Communication, Jagiellonian University, Krakow, Poland
| | - Ewa Kublik
- Neurobiology of Emotions Laboratory, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
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Londoño‐Ramírez H, Huang X, Cools J, Chrzanowska A, Brunner C, Ballini M, Hoffman L, Steudel S, Rolin C, Mora Lopez C, Genoe J, Haesler S. Multiplexed Surface Electrode Arrays Based on Metal Oxide Thin-Film Electronics for High-Resolution Cortical Mapping. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2308507. [PMID: 38145348 PMCID: PMC10933637 DOI: 10.1002/advs.202308507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 12/15/2023] [Indexed: 12/26/2023]
Abstract
Electrode grids are used in neuroscience research and clinical practice to record electrical activity from the surface of the brain. However, existing passive electrocorticography (ECoG) technologies are unable to offer both high spatial resolution and wide cortical coverage, while ensuring a compact acquisition system. The electrode count and density are restricted by the fact that each electrode must be individually wired. This work presents an active micro-electrocorticography (µECoG) implant that tackles this limitation by incorporating metal oxide thin-film transistors (TFTs) into a flexible electrode array, allowing to address multiple electrodes through a single shared readout line. By combining the array with an incremental-ΔΣ readout integrated circuit (ROIC), the system is capable of recording from up to 256 electrodes virtually simultaneously, thanks to the implemented 16:1 time-division multiplexing scheme, offering lower noise levels than existing active µECoG arrays. In vivo validation is demonstrated acutely in mice by recording spontaneous activity and somatosensory evoked potentials over a cortical surface of ≈8×8 mm2 . The proposed neural interface overcomes the wiring bottleneck limiting ECoG arrays, holding promise as a powerful tool for improved mapping of the cerebral cortex and as an enabling technology for future brain-machine interfaces.
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Affiliation(s)
- Horacio Londoño‐Ramírez
- Department of Neuroscience, Leuven Brain InstituteKatholieke Universiteit (KU) LeuvenLeuven3001Belgium
- Neuroelectronics Research Flanders (NERF)Leuven3001Belgium
- imecLeuven3001Belgium
- Flanders Institute for Biotechnology (VIB)Gent9052Belgium
| | - Xiaohua Huang
- imecLeuven3001Belgium
- Department of Electrical Engineering (ESAT)Katholieke Universiteit (KU) LeuvenLeuven3001Belgium
| | - Jordi Cools
- Neuroelectronics Research Flanders (NERF)Leuven3001Belgium
- imecLeuven3001Belgium
- Flanders Institute for Biotechnology (VIB)Gent9052Belgium
- Present address:
Thermo Fisher Scientific3001LeuvenBelgium
| | - Anna Chrzanowska
- Neuroelectronics Research Flanders (NERF)Leuven3001Belgium
- Flanders Institute for Biotechnology (VIB)Gent9052Belgium
- Department of BiologyKatholieke Universiteit (KU) LeuvenLeuven3001Belgium
| | - Clément Brunner
- Department of Neuroscience, Leuven Brain InstituteKatholieke Universiteit (KU) LeuvenLeuven3001Belgium
- Neuroelectronics Research Flanders (NERF)Leuven3001Belgium
- Flanders Institute for Biotechnology (VIB)Gent9052Belgium
| | - Marco Ballini
- imecLeuven3001Belgium
- Present address:
Microphone Business Unit, TDK InvenSense20057MilanItaly
| | - Luis Hoffman
- Neuroelectronics Research Flanders (NERF)Leuven3001Belgium
- imecLeuven3001Belgium
- Present address:
Swave Photonics3001LeuvenBelgium
| | - Soeren Steudel
- imecLeuven3001Belgium
- Present address:
MICLEDI Microdisplays3001LeuvenBelgium
| | | | | | - Jan Genoe
- Department of Electrical Engineering (ESAT)Katholieke Universiteit (KU) LeuvenLeuven3001Belgium
| | - Sebastian Haesler
- Department of Neuroscience, Leuven Brain InstituteKatholieke Universiteit (KU) LeuvenLeuven3001Belgium
- Neuroelectronics Research Flanders (NERF)Leuven3001Belgium
- Flanders Institute for Biotechnology (VIB)Gent9052Belgium
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Chintaluri C, Bejtka M, Średniawa W, Czerwiński M, Dzik JM, Jędrzejewska-Szmek J, Wójcik DK. kCSD-python, reliable current source density estimation with quality control. PLoS Comput Biol 2024; 20:e1011941. [PMID: 38484020 DOI: 10.1371/journal.pcbi.1011941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 03/26/2024] [Accepted: 02/23/2024] [Indexed: 03/27/2024] Open
Abstract
Interpretation of extracellular recordings can be challenging due to the long range of electric field. This challenge can be mitigated by estimating the current source density (CSD). Here we introduce kCSD-python, an open Python package implementing Kernel Current Source Density (kCSD) method and related tools to facilitate CSD analysis of experimental data and the interpretation of results. We show how to counter the limitations imposed by noise and assumptions in the method itself. kCSD-python allows CSD estimation for an arbitrary distribution of electrodes in 1D, 2D, and 3D, assuming distributions of sources in tissue, a slice, or in a single cell, and includes a range of diagnostic aids. We demonstrate its features in a Jupyter Notebook tutorial which illustrates a typical analytical workflow and main functionalities useful in validating analysis results.
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Affiliation(s)
- Chaitanya Chintaluri
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Marta Bejtka
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Władysław Średniawa
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Michał Czerwiński
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Jakub M Dzik
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Joanna Jędrzejewska-Szmek
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
| | - Daniel K Wójcik
- Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
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Zhu P, Liu S, Tian Y, Chen Y, Chen W, Wang P, Du L, Wu C. Odor-induced modification of oscillations and related theta-higher gamma coupling in olfactory bulb neurons of awake and anesthetized rats. Front Chem 2022; 10:865006. [PMID: 35978860 PMCID: PMC9376862 DOI: 10.3389/fchem.2022.865006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Accepted: 06/28/2022] [Indexed: 11/13/2022] Open
Abstract
Olfactory gamma oscillations (40–100 Hz) are generated spontaneously in animals and represent the activity of local olfactory bulb (OB) networks, which play important roles in cognitive mechanisms. In addition, high-frequency oscillations (HFO, 130–180 Hz) have attracted widespread attention and are novel neuronal oscillations with a frequency range closer to high gamma oscillations (60–100 Hz, HGOs). Both HGOs and HFOs are distinctly regulated by θ rhythm in the hippocampus. To understand their mediation mechanisms in the OB, we investigated whether local field potential (LFP) oscillations including HGOs and HFOs and even their coupling with theta rhythm are modified by odor stimulation in both freely moving and anesthetized rats. Therefore, we combined electrophysiological technology and cross-frequency coupling analysis approaches to determine the difference in the odor-modulated LFP oscillations between awake and anesthetized rats. The obtained results indicate that LFP oscillations including HGOs and HFOs were differently modified by odor stimulation in animals of both states. However, θ-HGO and θ-HFO coupling were modified in only awake animals. It is suggested that these oscillations and their interactions with theta oscillations may play crucial roles in olfactory network activity. This could pave the way for further understanding the underlying mechanisms of oscillations in OB neurons towards odor sensation.
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Affiliation(s)
- Ping Zhu
- Department of Biophysics, Health Science Center, Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University, Xi’an, China
- Key Laboratory of Environment and Genes Related to Diseases, Ministry of Education of China, Xi’an Jiaotong University, Xi’an, China
| | - Shuge Liu
- Department of Biophysics, Health Science Center, Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University, Xi’an, China
- Key Laboratory of Environment and Genes Related to Diseases, Ministry of Education of China, Xi’an Jiaotong University, Xi’an, China
| | - Yulan Tian
- Department of Biophysics, Health Science Center, Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University, Xi’an, China
- Key Laboratory of Environment and Genes Related to Diseases, Ministry of Education of China, Xi’an Jiaotong University, Xi’an, China
| | - Yating Chen
- Department of Biophysics, Health Science Center, Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University, Xi’an, China
- Key Laboratory of Environment and Genes Related to Diseases, Ministry of Education of China, Xi’an Jiaotong University, Xi’an, China
| | - Wei Chen
- Department of Biophysics, Health Science Center, Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University, Xi’an, China
- Key Laboratory of Environment and Genes Related to Diseases, Ministry of Education of China, Xi’an Jiaotong University, Xi’an, China
| | - Ping Wang
- Biosensor National Special Laboratory, Department of Biomedical Engineering, Zhejiang University, Hangzhou, China
- Key Laboratory for Biomedical Engineering of Ministry of Education, Department of Biomedical Engineering, Zhejiang University, Hangzhou, China
| | - Liping Du
- Department of Biophysics, Health Science Center, Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University, Xi’an, China
- Key Laboratory of Environment and Genes Related to Diseases, Ministry of Education of China, Xi’an Jiaotong University, Xi’an, China
- Biosensor National Special Laboratory, Department of Biomedical Engineering, Zhejiang University, Hangzhou, China
- Key Laboratory for Biomedical Engineering of Ministry of Education, Department of Biomedical Engineering, Zhejiang University, Hangzhou, China
- *Correspondence: Liping Du, ; Chunsheng Wu,
| | - Chunsheng Wu
- Department of Biophysics, Health Science Center, Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University, Xi’an, China
- Key Laboratory of Environment and Genes Related to Diseases, Ministry of Education of China, Xi’an Jiaotong University, Xi’an, China
- *Correspondence: Liping Du, ; Chunsheng Wu,
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Bowman C, Richter U, Jones CR, Agerskov C, Herrik KF. Activity-State Dependent Reversal of Ketamine-Induced Resting State EEG Effects by Clozapine and Naltrexone in the Freely Moving Rat. Front Psychiatry 2022; 13:737295. [PMID: 35153870 PMCID: PMC8830299 DOI: 10.3389/fpsyt.2022.737295] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Accepted: 01/06/2022] [Indexed: 11/13/2022] Open
Abstract
Ketamine is a non-competitive N-Methyl-D-aspartate receptor (NMDAR) antagonist used in the clinic to initiate and maintain anaesthesia; it induces dissociative states and has emerged as a breakthrough therapy for major depressive disorder. Using local field potential recordings in freely moving rats, we studied resting state EEG profiles induced by co-administering ketamine with either: clozapine, a highly efficacious antipsychotic; or naltrexone, an opioid receptor antagonist reported to block the acute antidepressant effects of ketamine. As human electroencephalography (EEG) is predominantly recorded in a passive state, head-mounted accelerometers were used with rats to determine active and passive states at a high temporal resolution to offer the highest translatability. In general, pharmacological effects for the three drugs were more pronounced in (or restricted to) the passive state. Specifically, during inactive periods clozapine induced increases in delta (0.1-4 Hz), gamma (30-60 Hz) and higher frequencies (>100 Hz). Importantly, it reversed the ketamine-induced reduction in low beta power (10-20 Hz) and potentiated ketamine-induced increases in gamma and high frequency oscillations (130-160 Hz). Naltrexone inhibited frequencies above 50 Hz and significantly reduced the ketamine-induced increase in high frequency oscillations. However, some frequency band changes, such as clozapine-induced decreases in delta power, were only seen in locomoting rats. These results emphasise the potential in differentiating between activity states to capture drug effects and translate to human resting state EEG. Furthermore, the differential reversal of ketamine-induced EEG effects by clozapine and naltrexone may have implications for the understanding of psychotomimetic as well as rapid antidepressant effects of ketamine.
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Affiliation(s)
- Christien Bowman
- Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, Netherlands.,Bio Imaging Laboratory, Faculty of Pharmaceutical, Biomedical and Veterinary Sciences, University of Antwerp, Antwerp, Belgium
| | - Ulrike Richter
- Department of Circuit Biology, Lundbeck, Copenhagen, Denmark
| | - Christopher R Jones
- Department of Pharmacokinetic and Pharmacodynamic Modeling and Simulation, Lundbeck, Copenhagen, Denmark
| | - Claus Agerskov
- Department of Circuit Biology, Lundbeck, Copenhagen, Denmark
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