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Palomino C, Cabrera A. Evaluation of the Allelic Variations in Vernalisation ( VRN1) and Photoperiod ( PPD1) Genes and Genetic Diversity in a Spanish Spelt Wheat Collection. Int J Mol Sci 2023; 24:16041. [PMID: 38003231 PMCID: PMC10671769 DOI: 10.3390/ijms242216041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 11/02/2023] [Accepted: 11/03/2023] [Indexed: 11/26/2023] Open
Abstract
Allelic variation within genes controlling the vernalisation requirement (VRN1) and photoperiod response (PPD1) determines the adaptation of wheat to different environmental growing conditions as well as influences other traits related to grain yield. This study aimed to screen a Spanish spelt wheat collection using gene-specific molecular markers for VRN-A1, VRN-B1, VRN-D1, and PPD-D1 loci and to phenotype for heading date (HD) in both field and greenhouse experiments under a long photoperiod and without vernalisation. Fifty-five spelt genotypes (91.7%) exhibited a spring growth habit, and all of them carried at least one dominant VRN1 allele, whereas five (8.3%) genotypes had a winter growth habit, and they carried the triple recessive allele combination. The Vrn-D1s was the most frequent allele in the studied set of spelt accessions, and it was found in combination with both the dominant Vrn-A1b and/or Vrn-B1a alleles in 88.3% of the spelt accessions tested. All spelt accessions carried the photoperiod-sensitive Ppd-D1b allele, which may explain the late heading of spelt germplasm compared to the commercial spring bread wheat Setenil used as a control. The least significant difference test showed significant differences between allelic combinations, the earliest accessions being those carrying two or three dominant alleles, followed by the one-gene combinations. In addition, the genetic diversity was evaluated through capillary electrophoresis using 15 wheat simple sequence repeat (SSR) markers. Most markers had high levels of polymorphism, producing 95 different alleles which ranged between 53 and 279 bp in size. Based on the polymorphic information content values obtained (from 0.51 to 0.97), 12 out of the 15 SSRs were catalogued as informative markers (values > 0.5). According to the dendrogram generated, the spelt accessions clustered as a separate group from the commercial bread wheat Setenil. Knowledge of VRN1 and PPD1 alleles, heading time, and genetic variability using SSR markers is valuable for spelt wheat breeding programs.
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Affiliation(s)
| | - Adoración Cabrera
- Genetics Department, ETSIAM, Campus de Rabanales, Universidad de Córdoba, CeiA3, 14071 Córdoba, Spain;
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Fadida-Myers A, Fuerst D, Tzuberi A, Yadav S, Nashef K, Roychowdhury R, Sansaloni CP, Hübner S, Ben-David R. Emmer Wheat Eco-Geographic and Genomic Congruence Shapes Phenotypic Performance under Mediterranean Climate. PLANTS 2022; 11:plants11111460. [PMID: 35684235 PMCID: PMC9183160 DOI: 10.3390/plants11111460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 05/25/2022] [Accepted: 05/27/2022] [Indexed: 11/25/2022]
Abstract
Emmer wheat (Triticum turgidum ssp. dicoccum) is one of the world’s oldest domesticated crops, and it harbors a potentially rich reservoir of agronomic and nutritional quality trait variations. The growing global demand for plant-based health-food niche markets has promoted new commercial interest in ancient grains, including Emmer wheat. Although T. dicoccum can also perform well under harsh environments, its cultivation along the Mediterranean agro-ecosystems is sparse. Here, we analyze a unique tetraploid wheat collection (n = 121) representing a wide geographic range of Emmer accessions, using 9897 DArTseq markers and on-field phenotypic characterization to quantify the extent of diversity among populations and the interactions between eco-geographic, genetic, and phenotypic attributes. Population genomic inferences based on the DArTseq data indicated that the collection could be split into four distinguished clusters in accordance with their eco-geographic origin although significant phenotypic variation was observed within clusters. Superior early vegetative vigor, shorter plant height, and early phenology were observed among emmer wheat accessions from Ethiopia compared to accessions from northern regions. This adaptive advantage highlights the potential of emmer wheat as an exotic germplasm for wheat improvement through breeding. The direct integration of such germplasm into conventional or organic farming agro-systems under the Mediterranean basin climate is also discussed.
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Affiliation(s)
- Aviya Fadida-Myers
- Department of Vegetables and Field Crops, Institute of Plant Sciences, Agricultural Research Organization (ARO)—The Volcani Center, Rishon LeZion 7505101, Israel; (A.F.-M.); (A.T.); (S.Y.); (K.N.); (R.R.)
- The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot 7610001, Israel
| | - Dana Fuerst
- Galilee Research Institute (Migal), Tel-Hai Academic College, Upper Galilee 12210, Israel; (D.F.); (S.H.)
| | - Aviv Tzuberi
- Department of Vegetables and Field Crops, Institute of Plant Sciences, Agricultural Research Organization (ARO)—The Volcani Center, Rishon LeZion 7505101, Israel; (A.F.-M.); (A.T.); (S.Y.); (K.N.); (R.R.)
| | - Shailesh Yadav
- Department of Vegetables and Field Crops, Institute of Plant Sciences, Agricultural Research Organization (ARO)—The Volcani Center, Rishon LeZion 7505101, Israel; (A.F.-M.); (A.T.); (S.Y.); (K.N.); (R.R.)
| | - Kamal Nashef
- Department of Vegetables and Field Crops, Institute of Plant Sciences, Agricultural Research Organization (ARO)—The Volcani Center, Rishon LeZion 7505101, Israel; (A.F.-M.); (A.T.); (S.Y.); (K.N.); (R.R.)
| | - Rajib Roychowdhury
- Department of Vegetables and Field Crops, Institute of Plant Sciences, Agricultural Research Organization (ARO)—The Volcani Center, Rishon LeZion 7505101, Israel; (A.F.-M.); (A.T.); (S.Y.); (K.N.); (R.R.)
| | - Carolina Paola Sansaloni
- Genetic Resource Program, International Maize and Wheat Improvement Center (CIMMYT), Carretera México-Veracruz Km. 45, El Batán, Texcoco 56237, Mexico;
| | - Sariel Hübner
- Galilee Research Institute (Migal), Tel-Hai Academic College, Upper Galilee 12210, Israel; (D.F.); (S.H.)
| | - Roi Ben-David
- Department of Vegetables and Field Crops, Institute of Plant Sciences, Agricultural Research Organization (ARO)—The Volcani Center, Rishon LeZion 7505101, Israel; (A.F.-M.); (A.T.); (S.Y.); (K.N.); (R.R.)
- Correspondence: ; Tel.: +972-39683030
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Frankin S, Roychowdhury R, Nashef K, Abbo S, Bonfil DJ, Ben-David R. In-Field Comparative Study of Landraces vs. Modern Wheat Genotypes under a Mediterranean Climate. PLANTS (BASEL, SWITZERLAND) 2021; 10:2612. [PMID: 34961083 PMCID: PMC8705803 DOI: 10.3390/plants10122612] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 11/23/2021] [Accepted: 11/24/2021] [Indexed: 06/07/2023]
Abstract
The Near East climate ranges from arid to a Mediterranean, under which local wheat landraces have been grown for over millennia, assumingly accumulating a unique repertoire of genetic adaptations. In the current study, we subjected a subset of the Israeli Palestinian Landraces (IPLR) collection (n = 19: durum and bread wheat landraces, modern wheat cultivars, and landraces mixtures) to full-field evaluation. The multifield experiment included a semiarid site (2018-2019, 2019-2020) under low (L) and high (H) supplementary irrigation, and a Mediterranean site (2019-2020). Water availability had a major impact on crop performance. This was reflected in a strong discrimination between environments for biomass productivity and yield components. Compared to landraces, modern cultivars exhibited significantly higher grain yield (GY) across environments (+102%) reflecting the effect of the Green Revolution. However, under the Gilat19 (L) environment, this productivity gap was significantly reduced (only +39%). Five excelling landraces and the durum mix exhibited good agronomic potential across all trails. This was expressed in relatively high GY (2.3-2.85 t ha-1), early phenology (86-96 days to heading) and lodging resistance. Given the growing interest of stakeholders and consumers, these might be considered future candidates for the local artisanal wheat grain market. Yet, this step should be taken only after establishing an adjustable field management protocol.
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Affiliation(s)
- Sivan Frankin
- Department of Vegetable and Field Crops, Institute of Plant Sciences, Agricultural Research Organization–Volcani Institute, Rishon LeZion 7528809, Israel; (S.F.); (R.R.); (K.N.)
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7628604, Israel;
| | - Rajib Roychowdhury
- Department of Vegetable and Field Crops, Institute of Plant Sciences, Agricultural Research Organization–Volcani Institute, Rishon LeZion 7528809, Israel; (S.F.); (R.R.); (K.N.)
| | - Kamal Nashef
- Department of Vegetable and Field Crops, Institute of Plant Sciences, Agricultural Research Organization–Volcani Institute, Rishon LeZion 7528809, Israel; (S.F.); (R.R.); (K.N.)
| | - Shahal Abbo
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7628604, Israel;
| | - David J. Bonfil
- Department of Vegetable and Field Crop Research, Agricultural Research Organization, Gilat Research Center, MP Negev 8531100, Israel;
| | - Roi Ben-David
- Department of Vegetable and Field Crops, Institute of Plant Sciences, Agricultural Research Organization–Volcani Institute, Rishon LeZion 7528809, Israel; (S.F.); (R.R.); (K.N.)
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