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Vogels JJ, Van de Waal DB, WallisDeVries MF, Van den Burg AB, Nijssen M, Bobbink R, Berg MP, Olde Venterink H, Siepel H. Towards a mechanistic understanding of the impacts of nitrogen deposition on producer-consumer interactions. Biol Rev Camb Philos Soc 2023; 98:1712-1731. [PMID: 37265074 DOI: 10.1111/brv.12972] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 04/25/2023] [Accepted: 04/26/2023] [Indexed: 06/03/2023]
Abstract
Nitrogen (N) deposition has increased substantially since the second half of the 20th century due to human activities. This increase of reactive N into the biosphere has major implications for ecosystem functioning, including primary production, soil and water chemistry and producer community structure and diversity. Increased N deposition is also linked to the decline of insects observed over recent decades. However, we currently lack a mechanistic understanding of the effects of high N deposition on individual fitness, species richness and community structure of both invertebrate and vertebrate consumers. Here, we review the effects of N deposition on producer-consumer interactions, focusing on five existing ecological frameworks: C:N:P ecological stoichiometry, trace element ecological stoichiometry, nutritional geometry, essential micronutrients and allelochemicals. We link reported N deposition-mediated changes in producer quality to life-history strategies and traits of consumers, to gain a mechanistic understanding of the direction of response in consumers. We conclude that high N deposition influences producer quality via eutrophication and acidification pathways. This makes oligotrophic poorly buffered ecosystems most vulnerable to significant changes in producer quality. Changes in producer quality between the reviewed frameworks are often interlinked, complicating predictions of the effects of high N deposition on producer quality. The degree and direction of fitness responses of consumers to changes in producer quality varies among species but can be explained by differences in life-history traits and strategies, particularly those affecting species nutrient intake regulation, mobility, relative growth rate, host-plant specialisation, ontogeny and physiology. To increase our understanding of the effects of N deposition on these complex mechanisms, the inclusion of life-history traits of consumer species in future study designs is pivotal. Based on the reviewed literature, we formulate five hypotheses on the mechanisms underlying the effects of high N deposition on consumers, by linking effects of nutritional ecological frameworks to life-history strategies. Importantly, we expect that N-deposition-mediated changes in producer quality will result in a net decrease in consumer community as well as functional diversity. Moreover, we anticipate an increased risk of outbreak events of a small subset of generalist species, with concomitant declines in a multitude of specialist species. Overall, linking ecological frameworks with consumer life-history strategies provides a mechanistic understanding of the impacts of high N deposition on producer-consumer interactions, which can inform management towards more effective mitigation strategies.
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Affiliation(s)
- Joost J Vogels
- Bargerveen Foundation, Toernooiveld 1, 6525 ED, Nijmegen, The Netherlands
- Department of Animal Ecology and Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Dedmer B Van de Waal
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB, Wageningen, The Netherlands
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Sciencepark 904, 1098 XH, Amsterdam, The Netherlands
| | - Michiel F WallisDeVries
- De Vlinderstichting / Dutch Butterfly Conservation, P.O. Box 6700 AM, Wageningen, The Netherlands
| | | | - Marijn Nijssen
- Bargerveen Foundation, Toernooiveld 1, 6525 ED, Nijmegen, The Netherlands
- Department of Animal Ecology and Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Roland Bobbink
- B-WARE Research Centre, Radboud University Nijmegen, Toernooiveld 1, 6525 ED, Nijmegen, The Netherlands
| | - Matty P Berg
- A-LIFE, Section Ecology & Evolution, Vrije Universiteit, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands
- GELIFES, Community and Conservation Ecology Group, University of Groningen, Nijenborgh 7, 9747 AG, Groningen, The Netherlands
| | - Harry Olde Venterink
- Department of Biology, Vrije Universiteit Brussel, Pleinlaan 2, 1050, Brussels, Belgium
| | - Henk Siepel
- Department of Animal Ecology and Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
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Kobayashi S, Maldonado JE, Gaete A, Araya I, Aguado-Norese C, Cumplido N, Díaz S, Espinoza A, Fernández E, Gajardo F, González-Ordenes F, Hauyon K, Maldonado P, Maldonado R, Pochet I, Riveros A, Sandoval P, Sepúlveda-González A, Stuardo C, Tapia-Reyes P, Thornton C, Undurraga S, Varas M, Valdivieso C, Gutiérrez RA, Orellana A, Montecino M, Maass A, González M, Allende ML, Hodar C, Irles P. DNA sequencing in the classroom: complete genome sequence of two earwig (Dermaptera; Insecta) species. Biol Res 2023; 56:6. [PMID: 36797803 PMCID: PMC9935246 DOI: 10.1186/s40659-023-00414-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2022] [Accepted: 01/16/2023] [Indexed: 02/18/2023] Open
Abstract
BACKGROUND Despite representing the largest fraction of animal life, the number of insect species whose genome has been sequenced is barely in the hundreds. The order Dermaptera (the earwigs) suffers from a lack of genomic information despite its unique position as one of the basally derived insect groups and its importance in agroecosystems. As part of a national educational and outreach program in genomics, a plan was formulated to engage the participation of high school students in a genome sequencing project. Students from twelve schools across Chile were instructed to capture earwig specimens in their geographical area, to identify them and to provide material for genome sequencing to be carried out by themselves in their schools. RESULTS The school students collected specimens from two cosmopolitan earwig species: Euborellia annulipes (Fam. Anisolabididae) and Forficula auricularia (Fam. Forficulidae). Genomic DNA was extracted and, with the help of scientific teams that traveled to the schools, was sequenced using nanopore sequencers. The sequence data obtained for both species was assembled and annotated. We obtained genome sizes of 1.18 Gb (F. auricularia) and 0.94 Gb (E. annulipes) with the number of predicted protein coding genes being 31,800 and 40,000, respectively. Our analysis showed that we were able to capture a high percentage (≥ 93%) of conserved proteins indicating genomes that are useful for comparative and functional analysis. We were also able to characterize structural elements such as repetitive sequences and non-coding RNA genes. Finally, functional categories of genes that are overrepresented in each species suggest important differences in the process underlying the formation of germ cells, and modes of reproduction between them, features that are one of the distinguishing biological properties that characterize these two distant families of Dermaptera. CONCLUSIONS This work represents an unprecedented instance where the scientific and lay community have come together to collaborate in a genome sequencing project. The versatility and accessibility of nanopore sequencers was key to the success of the initiative. We were able to obtain full genome sequences of two important and widely distributed species of insects which had not been analyzed at this level previously. The data made available by the project should illuminate future studies on the Dermaptera.
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Affiliation(s)
- Sanae Kobayashi
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Jonathan E. Maldonado
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.412179.80000 0001 2191 5013Facultad de Química y Biología, Universidad de Santiago de Chile, 9170022 Santiago, Chile
| | - Alexis Gaete
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466INTA, Universidad de Chile, 7830490 Santiago, Chile
| | - Ingrid Araya
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.512263.1Advanced Center for Chronic Diseases (ACCDiS), Sergio Livingstone 1007, 8380494 Independencia, Santiago Chile
| | - Constanza Aguado-Norese
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466INTA, Universidad de Chile, 7830490 Santiago, Chile
| | - Nicolás Cumplido
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Sebastián Díaz
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Alonso Espinoza
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.412848.30000 0001 2156 804XFacultad de Ciencias de la Vida, Centro de Biotecnología Vegetal, Universidad Andres Bello, Santiago, Chile
| | - Edelmira Fernández
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Felipe Gajardo
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Felipe González-Ordenes
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Khantati Hauyon
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466INTA, Universidad de Chile, 7830490 Santiago, Chile
| | - Piedad Maldonado
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Rodrigo Maldonado
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.412848.30000 0001 2156 804XFacultad de Medicina y Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago, Chile
| | - Isabel Pochet
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.7870.80000 0001 2157 0406Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Aníbal Riveros
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.424112.00000 0001 0943 9683ANID-Millennium Science Initiative Program—Millennium Nucleus for the Development of Super Adaptable Plants (MN-SAP), Santiago, Chile
| | - Paula Sandoval
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.7870.80000 0001 2157 0406Facultad de Agronomía e Ingeniería Forestal, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Ailynne Sepúlveda-González
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466INTA, Universidad de Chile, 7830490 Santiago, Chile
| | - Camila Stuardo
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466INTA, Universidad de Chile, 7830490 Santiago, Chile
| | - Patricio Tapia-Reyes
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.7870.80000 0001 2157 0406Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Carolina Thornton
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.7870.80000 0001 2157 0406Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Soledad Undurraga
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.412199.60000 0004 0487 8785Facultad de Ciencias, Ingeniería y Tecnología, Universidad Mayor, Santiago, Chile
| | - Macarena Varas
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Camilo Valdivieso
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | | | - Rodrigo A. Gutiérrez
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.7870.80000 0001 2157 0406Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Ariel Orellana
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.412848.30000 0001 2156 804XFacultad de Ciencias de la Vida, Centro de Biotecnología Vegetal, Universidad Andres Bello, Santiago, Chile
| | - Martín Montecino
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.412848.30000 0001 2156 804XFacultad de Medicina y Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago, Chile
| | - Alejandro Maass
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Departamento de Ingeniería Matemática, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Santiago, Chile
| | - Mauricio González
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466INTA, Universidad de Chile, 7830490 Santiago, Chile
| | - Miguel L. Allende
- Millennium Institute Center for Genome Regulation, 7800003 Santiago, Chile ,grid.443909.30000 0004 0385 4466Facultad de Ciencias, Universidad de Chile, 7800003 Santiago, Chile
| | - Christian Hodar
- Millennium Institute Center for Genome Regulation, 7800003, Santiago, Chile. .,INTA, Universidad de Chile, 7830490, Santiago, Chile.
| | - Paula Irles
- Institute of Agri-food, Animal and Environmental Sciences, Universidad de O´Higgins, Rancagua, Chile.
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Nessel MP, Konnovitch T, Romero GQ, González AL. Decline of insects and arachnids driven by nutrient enrichment: A meta-analysis. Ecology 2023; 104:e3897. [PMID: 36217891 PMCID: PMC10078409 DOI: 10.1002/ecy.3897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 08/21/2022] [Accepted: 09/07/2022] [Indexed: 02/03/2023]
Abstract
Recent studies have documented global declines in insects and their relatives, but the exact mechanisms explaining these patterns are not fully understood. A potential driver underlying arthropod population declines is increases in anthropogenic inputs of nitrogen (N) and phosphorus (P). Here, we synthesize the effects of N, P, and combined N + P enrichment on the abundance of hexapods (insects and collembola) and arachnids from 901 experiments reported in 84 studies. We found that N and combined N + P enrichment caused significant decreases in the abundance of these groups overall. While arthropod responses to nutrient enrichment across aquatic and terrestrial habitats and in temperate as well as tropical climatic zones differed in magnitude, our results suggest that arthropods are decreasing similarly in response to nitrogen and phosphorus enrichment. Further, despite previously shown differences in the nutrient demands of different insect metamorphosis groups, we found consistent negative effects of N + P enrichment on all groups. Our results also showed that the negative effects of nutrient additions are stronger for aquatic insects that are considered more sensitive to changes in physical-chemical parameters in their environments, Ephemeroptera, Plecoptera, and Trichoptera (EPT), compared with other aquatic insects. In addition, N + P enrichment reduced the abundance of above-ground and below-ground arthropods, suggesting that a similar mechanism driving arthropod community change is acting on both groups. These findings suggest that changes in elemental cycles are a potential cause of the ongoing global decline of arthropods and underscore the serious effects of nutrient enrichment on ecological systems.
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Affiliation(s)
- Mark P Nessel
- Center for Computational and Integrative Biology, Rutgers University, Camden, New Jersey, USA
| | - Theresa Konnovitch
- Center for Computational and Integrative Biology, Rutgers University, Camden, New Jersey, USA.,Biology Department, La Salle University, Philadelphia, Pennsylvania, USA
| | - Gustavo Q Romero
- Department of Animal Biology, Institute of Biology, University of Campinas (UNICAMP), São Paulo, Brazil
| | - Angélica L González
- Center for Computational and Integrative Biology, Rutgers University, Camden, New Jersey, USA.,Biology Department, Rutgers University, New Brunswick, New Jersey, USA
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