Influence of elemental sulfur on cadmium bioavailability, microbial community in paddy soil and Cd accumulation in rice plants

Ranking environmental and edaphic attributes driving soil microbial community structure and activity with special attention to spatial and temporal scales

The incredibly complex soil microbial communities at small scales make their analysis and identification of reasons for the observed structures challenging. Microbial community structure is mainly a result of the inoculum (dispersal), the selective advantages of those organisms under the habitat-based environmental attributes, and the ability of those colonizers to sustain themselves over time. Since soil is protective, and its microbial inhabitants have long adapted to varied soil conditions, significant portions of the soil microbial community structure are likely stable. Hence, a substantial portion of the community will not correlate to often measured soil attributes. We suggest that the drivers be ranked on the basis of their importance to the fundamental needs of the microbes: (i) those that supply energy, i.e., organic carbon and electron acceptors; (ii) environmental effectors or stressors, i.e., pH, salt, drought, and toxic chemicals; (iii) macro-organism associations, i.e., plants and their seasonality, animals and their fecal matter, and soil fauna; and (iv) nutrients, in order, N, P, and probably of lesser importance, other micronutrients, and metals. The relevance of drivers also varies with spatial and time scales, for example, aggregate to field to regional, and persistent to dynamic populations to transcripts, and with the extent of phylogenetic difference, hence phenotypic differences in organismal groups. We present a summary matrix to provide guidance on which drivers are important for particular studies, with special emphasis on a wide range of spatial and temporal scales, and illustrate this with genomic and population (rRNA gene) data from selected studies.

Exploring the mechanism of Cd uptake and translocation in rice: Future perspectives of rice safety

Cadmium (Cd) contamination in rice fields has been recognized as a severe global agro-environmental issue. To reach the goal of controlling Cd risk, we must pay more attention and obtain an in-depth understanding of the environmental behavior, uptake and translocation of Cd in soil-rice systems. However, to date, these aspects still lack sufficient exploration and summary. Here, we critically reviewed (i) the processes and transfer proteins of Cd uptake/transport in the soil-rice system, (ii) a series of soil and other environmental factors affecting the bioavailability of Cd in paddies, and (iii) the latest advances in regard to remediation strategies while producing rice. We propose that the correlation between the bioavailability of Cd and environmental factors must be further explored to develop low Cd accumulation and efficient remediation strategies in the future. Second, the mechanism of Cd uptake in rice mediated by elevated CO2 also needs to be given more attention. Meanwhile, more scientific planting methods (direct seeding and intercropping) and suitable rice with low Cd accumulation are important measures to ensure the safety of rice consumption. In addition, the relevant Cd efflux transporters in rice have yet to be revealed, which will promote molecular breeding techniques to address the current Cd-contaminated soil-rice system. The potential for efficient, durable, and low-cost soil remediation technologies and foliar amendments to limit Cd uptake by rice needs to be examined in the future. Conventional breeding procedures combined with molecular marker techniques for screening rice varieties with low Cd accumulation could be a more practical approach to select for desirable agronomic traits with low risk.

Combined application of biochar and sulfur alleviates cadmium toxicity in rice by affecting root gene expression and iron plaque accumulation

Biochar and sulfur are considered useful amendments for soil cadmium (Cd) contamination remediation. However, there is still a gap in the understanding of how combined biochar and sulfur application affects Cd resistance in rice, and the role of the accumulation of iron plaque and the expression of Cd efflux transporter-related genes are still unclear in this type of treatment. In this study, we screened an effective combination of biochar and sulfur (0.75 % biochar, 60 mg/kg sulfur) that significantly reduced the Cd content of rice roots (32.9 %) and shoots (12.3 %); significantly reduced the accumulation of amino acids and their derivatives, organic acids and their derivatives and flavonoids in rice roots; and altered secondary metabolite production and release. This combined biochar and sulfur application alleviated the toxicity of Cd to rice, in which the enhancement of iron plaque (24.8 %) formation and upregulated expression of heavy metal effector genes (NRAMP3, MTP3, ZIP1) were important factors. These findings show that iron plaque and heavy metal transport genes are involved in the detoxification of rice under the combined application of biochar and sulfur, which provides useful information for the combined treatment of soil Cd pollution.

Reduction of bioavailability and phytotoxicity effect of cadmium in soil by microbial-induced carbonate precipitation using metabolites of ureolytic bacterium Ochrobactrum sp. POC9

The application of ureolytic bacteria for bioremediation of soil contaminated with heavy metals, including cadmium (Cd), allows for the efficient immobilization of heavy metals by precipitation or coprecipitation with carbonates. Microbially-induced carbonate precipitation process may be useful also in the case of the cultivation of crop plants in various agricultural soils with trace but legally permissible Cd concentrations, which may be still uptaken by plants. This study aimed to investigate the influence of soil supplementation with metabolites containing carbonates (MCC) produced by the ureolytic bacterium Ochrobactrum sp. POC9 on the Cd mobility in the soil as well as on the Cd uptake efficiency and general condition of crop plants (Petroselinum crispum). In the frame of the conducted studies (i) carbonate productivity of the POC9 strain, (ii) the efficiency of Cd immobilization in soil supplemented with MCC, (iii) crystallization of cadmium carbonate in the soil enriched with MCC, (iv) the effect of MCC on the physico-chemical and microbiological properties of soil, and (v) the effect of changes in soil properties on the morphology, growth rate, and Cd-uptake efficiency of crop plants were investigated. The experiments were conducted in soil contaminated with a low concentration of Cd to simulate the natural environmental conditions. Soil supplementation with MCC significantly reduced the bioavailability of Cd in soil with regard to control variants by about 27-65% (depending on the volume of MCC) and reduced the Cd uptake by plants by about 86% and 74% in shoots and roots, respectively. Furthermore, due to the decrease in soil toxicity and improvement of soil nutrition with other metabolites produced during the urea degradation (MCC), some microbiological properties of soil (quantity and activity of soil microorganisms), as well as the general condition of plants, were also significantly improved. Soil supplementation with MCC enabled efficient Cd stabilization and significantly reduced its toxicity for soil microbiota and plants. Thus, MCC produced by POC9 strain may be used not only as an effective Cd immobilizer in soil but also as a microbe and plant stimulators.

The Application of Sulfur Influences Microbiome of Soybean Rhizosphere and Nutrient-Mobilizing Bacteria in Andosol

This study aimed to determine the effect of sulfur (S) application on a root-associated microbial community resulting in a rhizosphere microbiome with better nutrient mobilizing capacity. Soybean plants were cultivated with or without S application, the organic acids secreted from the roots were compared. High-throughput sequencing of 16S rRNA was used to analyze the effect of S on microbial community structure of the soybean rhizosphere. Several plant growth-promoting bacteria (PGPB) isolated from the rhizosphere were identified that can be harnessed for crop productivity. The amount of malic acid secreted from the soybean roots was significantly induced by S application. According to the microbiota analysis, the relative abundance of Polaromonas, identified to have positive association with malic acid, and arylsulfatase-producing Pseudomonas, were increased in S-applied soil. Burkholderia sp. JSA5, obtained from S-applied soil, showed multiple nutrient-mobilizing traits among the isolates. In this study, S application affected the soybean rhizosphere bacterial community structure, suggesting the contribution of changing plant conditions such as in the increase in organic acid secretion. Not only the shift of the microbiota but also isolated strains from S-fertilized soil showed PGPB activity, as well as isolated bacteria that have the potential to be harnessed for crop productivity.

The R2R3-MYB transcription factor ThRAX2 recognized a new element MYB-T (CTTCCA) to enhance cadmium tolerance in Tamarix hispida

R2R3-MYB transcription factors play an important role in plant development and response to various environmental stresses. In this study, a new R2R3-MYB gene, named ThRAX2, was isolated from T. hispida. ThRAX2 has an open reading frame (ORF) of 1191 bp and encodes a protein of 396 amino acids. ThRAX2 was localized in the nucleus. The overexpression of ThRAX2 in Arabidopsis and T. hispida significantly increased Cadmium (Cd) tolerance. Moreover, the accumulation of cadmium in roots and leaves was significantly reduced. The TF-centred Y1H and Y1H results showed that ThRAX2 was able to specifically bind a new cis-element (MYB-T, CTTCCA). The promoters of some Cd-responsive genes, such as ThSOS1, ThCKX3, ThCAX3A, ThMYB78, ThMIP2, ThTPS4, and ThSOD2, all contained 1-3 MYB-T sequences. Furthermore, chromatin immunoprecipitation-polymerase chain reaction (ChIP-PCR) and ChIPquantitative (q)PCR showed that the ThRAX2 gene can bind to ThSOS1, ThCKX3, ThCAX3A and ThMYB78 promoter fragments, including the MYB-T motif. Meanwhile, the qRTPCR results also showed that the expression trends of ThSOS1, ThCKX3, ThCAX3A and ThMYB78 were similar to that of ThRAX2. This finding suggests that Cd tolerance of the ThRAX2 gene may regulate the expression of some downstream genes through specific recognition of the MYB-T motif and participate in regulating intracellular ion homeostasis, transport, and protein activity or enhance antioxidant enzyme activity. This study found a novel cis-acting element that binds ThRAX2 to regulate Cd tolerance, which lays the foundation for the ThRAX2 regulatory mechanism of Cd stress. This study provides a genetic and theoretical basis for the bioremediation of Cd-contaminated land by cultivating transgenic plants in the future.

Nitric Oxide- and Sulfur-Mediated Reversal of Cadmium-Inhibited Photosynthetic Performance Involves Hydrogen Sulfide and Regulation of Nitrogen, Sulfur, and Antioxidant Metabolism in Mustard

This study aimed to test the role of hydrogen sulfide (H2S) in the responses regarding the nitric oxide- (NO) and sulfur (S)-mediated improvement in photosynthesis and growth under cadmium (Cd) stress in mustard (Brassica juncea L. cv. Giriraj), and integrate the mechanisms of S, nitrogen (N), and antioxidant metabolism. The plants grown with Cd (200 mg Cd kg−1 soil) exhibited reduced assimilation of S and N and diminished photosynthetic performance, which was associated with higher Cd accumulation-induced excess reactive oxygen species (ROS) production. The application of 100 μM of sodium nitroprusside (SNP, a NO donor) together with a more prominent concentration of S resulted in increased photosynthetic S- and N-use efficiency, production of non-protein thiols and phytochelatins, efficiency of enzymatic (superoxide dismutase, ascorbate peroxidase, and glutathione reductase), non-enzymatic antioxidants (ascorbate and glutathione) limiting Cd accumulation and, thus, reduced oxidative stress (superoxide radical, hydrogen peroxide, and thiobarbituric acid reactive species content). The benefit of NO together with S was manifested through a modulation in H2S production. The use of 100 μM of hypotaurine (HT; H2S scavenger) or 100 μM of cPTIO (2-4-carboxyphenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide) in plants treated with NO plus S reversed the action of NO plus S, with a higher reduction in photosynthesis and growth with the use of HT, suggesting that H2S plays a significant role in the NO- and S-mediated alleviation of Cd stress. The interplay of NO and ES with H2S may be used in augmenting the photosynthesis and growth of Cd-grown mustard plants.

A new insight into Cd reduction by flooding in paddy soil: The different dominant roles of Fe and S on Cd immobilization under fluctuant pe + pH conditions

The unsteady comprehensive system of pe + pH strongly affects the fate of Cd in paddy soils. However, the specific pe + pH threshold determining Cd bioavailability is largely unknown especially considering the roles of Fe and S reduction. The experiment set different water managements to obtain paddy soil samples with unstable pe + pH, and chemical analysis, X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS) characterization were applied to reveal the dynamic process and mechanism about how Fe and S controlled Cd mobilization. The results showed that low pe + pH was favorable to soil Cd immobilization. Compared with high and medium pe + pH, the exchangeable Cd content decreased by 67.57 % and 64.71 % at low pe + pH, respectively. The XPS results showed that the contents of Fe(II) and S(-II) increased to 65.1 % and 75.2 % at low pe + pH condition, which was higher than that in other treatments. In the process of flooding for reducing Cd mobility, first it was attributed to the formation of amorphous iron oxides that can provide amount of adsorption sites for Cd. After then, S^2- began to play a dominant role to combine with Cd²⁺ to form CdS with continuous decreased pe + pH. Therefore, Fe and S played the different dominant roles on Cd immobilization in paddy soil, and soil pe + pH value could work as a threshold.

Combination application of elemental sulfur and earthworm increased the lead (Pb) uptake by ryegrass (Lolium perenne L.) in contaminated agricultural soil

The phytoremediation efficiency is largely depends on the bioavailability of heavy metal in soil. The activity of earthworms and oxidation of elemental sulfur (S⁰) in soil has influence on heavy metal speciation transformation in soil. By conducting pot experiment, we examined the possibility of enhancing phytoextraction efficiency of lead (Pb) in soil by ryegrass (Lolium perenne L.) with application of both S⁰ and earthworms. Results showed that the addition of S⁰ decreased soil pH and increased soil CEC, while a slight trend of decrease for soil pH and increase for CEC was found with earthworm application. In soil treated with earthworms, the addition of S⁰ increased the concentration of DTPA-extractable Pb by 9.9~20.8%. The concentration of diffusive gradients in thin film (DGT)-extractable Pb was increased by 26.31~32.9% with S⁰ and earthworm addition. In soil treated with earthworms, the addition of S⁰ increased the concentration of Pb in shoots of ryegrass by 55.7~110.4% and the translocation factor of Pb in ryegrass was also increased by S⁰ addition. Our results suggested that the combination application of earthworms and S⁰ could be an effective way to enhance the remediation efficiency of ryegrass for Pb-contaminated soil.