Virtual data augmentation method for reaction prediction

Machine learning model to predict rate constants for sonochemical degradation of organic pollutants

In this study, machine learning (ML) algorithms were employed to predict the pseudo-1st-order reaction rate constants for the sonochemical degradation of aqueous organic pollutants under various conditions. A total of 618 sets of data, including ultrasonic, solution, and pollutant characteristics, were collected from 89 previous studies. Considering the difference between the electrical power (Pele) and calorimetric power (Pcal), the collected data were divided into two groups: data with Pele and data with Pcal. Eight input variables, including frequency, power density, pH, temperature, initial concentration, solubility, vapor pressure, and octanol-water partition coefficient (Kow), and one target variable of the degradation rate constant, were selected for ML. Statistical analysis was conducted, and outliers were determined separately for the two groups. ML models, including random forest (RF), extreme gradient boosting (XGB), and light gradient boosting machine (LGB), were used to predict the pseudo-1st-order reaction rate constants for the removal of aqueous pollutants. The prediction performance of the ML models was evaluated using different metrics, including the root mean squared error (RMSE), mean absolute error (MAE), and R squared (R2). A significantly higher prediction performance was obtained using data without outliers and augmented data. Consequently, all the applied ML models could be used to predict the sonochemical degradation of aqueous pollutants, and the XGB model showed the highest accuracy in predicting the rate constants. In addition, the power density and frequency were the most influential factors among the eight input variables in prediction with the Shapley additive explanation (SHAP) values method. The degradation rate constants of the two pollutants over a wide frequency range (20-1,000 kHz) were predicted using the trained ML model (XGB) and the prediction results were analyzed.

AutoTemplate: enhancing chemical reaction datasets for machine learning applications in organic chemistry

This paper presents AutoTemplate, an innovative data preprocessing protocol, addressing the crucial need for high-quality chemical reaction datasets in the realm of machine learning applications in organic chemistry. Recent advances in artificial intelligence have expanded the application of machine learning in chemistry, particularly in yield prediction, retrosynthesis, and reaction condition prediction. However, the effectiveness of these models hinges on the integrity of chemical reaction datasets, which are often plagued by inconsistencies like missing reactants, incorrect atom mappings, and outright erroneous reactions. AutoTemplate introduces a two-stage approach to refine these datasets. The first stage involves extracting meaningful reaction transformation rules and formulating generic reaction templates using a simplified SMARTS representation. This simplification broadens the applicability of templates across various chemical reactions. The second stage is template-guided reaction curation, where these templates are systematically applied to validate and correct the reaction data. This process effectively amends missing reactant information, rectifies atom-mapping errors, and eliminates incorrect data entries. A standout feature of AutoTemplate is its capability to concurrently identify and correct false chemical reactions. It operates on the premise that most reactions in datasets are accurate, using these as templates to guide the correction of flawed entries. The protocol demonstrates its efficacy across a range of chemical reactions, significantly enhancing dataset quality. This advancement provides a more robust foundation for developing reliable machine learning models in chemistry, thereby improving the accuracy of forward and retrosynthetic predictions. AutoTemplate marks a significant progression in the preprocessing of chemical reaction datasets, bridging a vital gap and facilitating more precise and efficient machine learning applications in organic synthesis. SCIENTIFIC CONTRIBUTION: The proposed automated preprocessing tool for chemical reaction data aims to identify errors within chemical databases. Specifically, if the errors involve atom mapping or the absence of reactant types, corrections can be systematically applied using reaction templates, ultimately elevating the overall quality of the database.

Effectiveness of Data Augmentation for Localization in WSNs Using Deep Learning for the Internet of Things

Wireless sensor networks (WSNs) have become widely popular and are extensively used for various sensor communication applications due to their flexibility and cost effectiveness, especially for applications where localization is a main challenge. Furthermore, the Dv-hop algorithm is a range-free localization algorithm commonly used in WSNs. Despite its simplicity and low hardware requirements, it does suffer from limitations in terms of localization accuracy. In this article, we develop an accurate Deep Learning (DL)-based range-free localization for WSN applications in the Internet of things (IoT). To improve the localization performance, we exploit a deep neural network (DNN) to correct the estimated distance between the unknown nodes (i.e., position-unaware) and the anchor nodes (i.e., position-aware) without burdening the IoT cost. DL needs large training data to yield accurate results, and the DNN is no stranger. The efficacy of machine learning, including DNNs, hinges on access to substantial training data for optimal performance. However, to address this challenge, we propose a solution through the implementation of a Data Augmentation Strategy (DAS). This strategy involves the strategic creation of multiple virtual anchors around the existing real anchors. Consequently, this process generates more training data and significantly increases data size. We prove that DAS can provide the DNNs with sufficient training data, and ultimately making it more feasible for WSNs and the IoT to fully benefit from low-cost DNN-aided localization. The simulation results indicate that the accuracy of the proposed (Dv-hop with DNN correction) surpasses that of Dv-hop.