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Nyamgerel N, Baasanmunkh S, Oyuntsetseg B, Bayarmaa GA, Erst A, Park I, Choi HJ. Insight into chloroplast genome structural variation of the Mongolian endemic species Adonis mongolica (Ranunculaceae) in the Adonideae tribe. Sci Rep 2023; 13:22014. [PMID: 38086985 PMCID: PMC10716127 DOI: 10.1038/s41598-023-49381-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 12/07/2023] [Indexed: 12/18/2023] Open
Abstract
Adonis mongolica is a threatened species that is endemic to Mongolia. It is a medicinal plant from the Adonis genus and has been used to treat heart diseases. However, the genomics and evolution of this species have not been thoroughly studied. We sequenced the first complete plastome of A. mongolica and compared it with ten Adonideae species to describe the plastome structure and infer phylogenetic relationships. The complete plastome of A. mongolica was 157,521 bp long and had a typical quadripartite structure with numerous divergent regions. The plastomes of Adonideae had relatively constant genome structures and sizes, except for those of Adonis. The plastome structure was consistent across Adonis. We identified a 44.8 kb large-scale inversion within the large single-copy region and rpl32 gene loss in the Adonis plastomes compared to other members of the Adonideae tribe. Additionally, Adonis had a smaller plastome size (156,917-157,603 bp) than the other genera within the tribe (159,666-160,940 bp), which was attributed to deletions of intergenic regions and partial and complete gene losses. These results suggested that an intramolecular mutation occurred in the ancestor of the Adonis genus. Based on the phylogenetic results, Adonis separated earlier than the other genera within the Adonideae tribe. The genome structures and divergences of specific regions in the Adonis genus were unique to the Adonideae tribe. This study provides fundamental knowledge for further genomic research in Mongolia and a better understanding of the evolutionary history of endemic plants.
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Affiliation(s)
- Nudkhuu Nyamgerel
- Department of Biology and Chemistry, Changwon National University, Changwon, 51140, South Korea
| | - Shukherdorj Baasanmunkh
- Department of Biology and Chemistry, Changwon National University, Changwon, 51140, South Korea
| | - Batlai Oyuntsetseg
- Department of Biology, School of Arts and Science, National University of Mongolia, Ulaanbaatar, 14201, Mongolia
| | - Gun-Aajav Bayarmaa
- Department of Biology, School of Arts and Science, National University of Mongolia, Ulaanbaatar, 14201, Mongolia
| | - Andrey Erst
- Central Siberian Botanical Garden, Siberian Branch of the Russian Academy of Science, Novosibirsk, 630090, Russia
| | - Inkyu Park
- Department of Biology and Chemistry, Changwon National University, Changwon, 51140, South Korea.
| | - Hyeok Jae Choi
- Department of Biology and Chemistry, Changwon National University, Changwon, 51140, South Korea.
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Molnár ÁP, Demeter L, Biró M, Chytrý M, Bartha S, Gantuya B, Molnár Z. Is there a massive glacial-Holocene flora continuity in Central Europe? Biol Rev Camb Philos Soc 2023; 98:2307-2319. [PMID: 37646107 DOI: 10.1111/brv.13007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 07/26/2023] [Accepted: 07/28/2023] [Indexed: 09/01/2023]
Abstract
The prevailing paradigm about the Quaternary ecological and evolutionary history of Central European ecosystems is that they were repeatedly impoverished by regional extinctions of most species during the glacial periods, followed by massive recolonizations from southern and eastern refugia during interglacial periods. Recent literature partially contradicts this view and provides evidence to re-evaluate this Postglacial Recolonization Hypothesis and develop an alternative one. We examined the long-term history of the flora of the Carpathian (Pannonian) Basin by synthesising recent advances in ecological, phylogeographical, palaeoecological and palaeoclimatological research, and analysing the cold tolerance of the native flora of a test area (Hungary, the central part of the Carpathian Basin). We found that (1) many species have likely occurred there continuously since before the Last Glacial Maximum (LGM); (2) most of the present-day native flora (1404 species, about 80%) can occur in climates as cold as or colder than the LGM (mean annual temperature ≤+3.5°C); and (3) grasslands and forests can be species-rich under an LGM-like cold climate. These arguments support an alternative hypothesis, which we call the Flora Continuity Hypothesis. It states that long-term continuity of much of the flora in the Carpathian Basin is more plausible than regional extinctions during the LGM followed by massive postglacial recolonizations. The long-term continuity of the region's flora may have fundamental implications not only for understanding local biogeography and ecology (e.g. the temporal scale of processes), but also for conservation strategies focusing on protecting ancient species-rich ecosystems and local gene pools.
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Affiliation(s)
- Ábel Péter Molnár
- Hungarian University of Agriculture and Life Sciences, Institute for Wildlife Management and Nature Conservation, Páter Károly u. 1., Gödöllő, 2100, Hungary
- Doctoral School of Biological Sciences, Hungarian University of Agriculture and Life Sciences, Páter Károly u. 1., Gödöllő, 2100, Hungary
| | - László Demeter
- Centre for Ecological Research, Institute of Ecology and Botany, Alkotmány u. 2-4., Vácrátót, 2163, Hungary
| | - Marianna Biró
- Centre for Ecological Research, Institute of Ecology and Botany, Alkotmány u. 2-4., Vácrátót, 2163, Hungary
| | - Milan Chytrý
- Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, Brno, 611 37, Czech Republic
| | - Sándor Bartha
- Centre for Ecological Research, Institute of Ecology and Botany, Alkotmány u. 2-4., Vácrátót, 2163, Hungary
| | - Batdelger Gantuya
- Botanic Garden and Research Institute, Mongolian Academy of Sciences, 13th Street, Peace Avenue 54a, Bayanzurkh district, Ulaanbaatar, 13330, Mongolia
- Doctoral School of Biology, Eötvös Lorand University, Budapest, Pázmány P. stny. 1/C., Budapest, 1117, Hungary
| | - Zsolt Molnár
- Centre for Ecological Research, Institute of Ecology and Botany, Alkotmány u. 2-4., Vácrátót, 2163, Hungary
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Luo XY, Nie TJ, Liu H, Ding XF, Huang Y, Guo CC, Zhang WG. Karyotype and genome size variation in Delphinium subg. Anthriscifolium (Ranunculaceae). PHYTOKEYS 2023; 234:145-165. [PMID: 37901134 PMCID: PMC10612113 DOI: 10.3897/phytokeys.234.108841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 09/22/2023] [Indexed: 10/31/2023]
Abstract
Five taxa of Delphiniumsubg.Anthriscifolium have been karyologically studied through chromosome counting, chromosomal measurement, and karyotype symmetry. Each taxon that we investigated has a basic chromosome number of x = 8, D.anthriscifoliumvar.savatieri, D.anthriscifoliumvar.majus, D.ecalcaratum, and D.callichromum were diploid with 2n = 16, while D.anthriscifoliumvar.anthriscifolium was tetraploid with 2n = 32. Monoploid chromosome sets of the investigated diploid taxa contained 1 metacentric chromosome, 3 submetacentric chromosomes, and 4 subtelocentric chromosomes. Higher interchromosomal asymmetry (CVCL) was present in D.ecalcaratum and D.callichromum than in other taxa. The highest levels of intrachromosomal asymmetry (MCA) and heterogeneity in centromere position (CVCI) were found in D.anthriscifoliumvar.majus. Diploid and tetraploid genome sizes varied by 3.02-3.92 pg and 6.04-6.60 pg, respectively. Karyotype and genome size of D.anthriscifoliumvar.savatieri, D.anthriscifoliumvar.majus, D.callichromum, and D.ecalcaratum were reported for the first time. Finally, based on cytological and morphological data, the classification of Delphiniumanthriscifolium was revised.
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Affiliation(s)
- Xiao-Yu Luo
- Forestry College, Jiangxi Agricultural University, Nanchang 330045, ChinaJiangxi Agricultural UniversityNanchangChina
- Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Nanchang 330045, ChinaJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and UtilizationNanchangChina
| | - Tang-Jie Nie
- Forestry College, Jiangxi Agricultural University, Nanchang 330045, ChinaJiangxi Agricultural UniversityNanchangChina
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, ChinaNanjing Forestry UniversityNanjingChina
| | - Heng Liu
- Forestry College, Jiangxi Agricultural University, Nanchang 330045, ChinaJiangxi Agricultural UniversityNanchangChina
- Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Nanchang 330045, ChinaJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and UtilizationNanchangChina
| | - Xue-Fei Ding
- Forestry College, Jiangxi Agricultural University, Nanchang 330045, ChinaJiangxi Agricultural UniversityNanchangChina
- Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Nanchang 330045, ChinaJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and UtilizationNanchangChina
| | - Ying Huang
- Forestry College, Jiangxi Agricultural University, Nanchang 330045, ChinaJiangxi Agricultural UniversityNanchangChina
- Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Nanchang 330045, ChinaJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and UtilizationNanchangChina
| | - Chun-Ce Guo
- Forestry College, Jiangxi Agricultural University, Nanchang 330045, ChinaJiangxi Agricultural UniversityNanchangChina
- Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Nanchang 330045, ChinaJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and UtilizationNanchangChina
| | - Wen-Gen Zhang
- Forestry College, Jiangxi Agricultural University, Nanchang 330045, ChinaJiangxi Agricultural UniversityNanchangChina
- Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Nanchang 330045, ChinaJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and UtilizationNanchangChina
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Zhang XY, Zhang ZL, Zhang LQ, Zhang LF, Zhu JY, Xue CS. Complete chloroplast genome of Adonis pseudoamurensis W.T.Wang (Ranunculaceae). Mitochondrial DNA B Resour 2023; 8:981-984. [PMID: 37727834 PMCID: PMC10506428 DOI: 10.1080/23802359.2023.2256493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 09/02/2023] [Indexed: 09/21/2023] Open
Abstract
Adonis pseudoamurensis W.T. Wang 1980 is an important traditional medicinal plant used for the treatment of cardiac diseases. The complete chloroplast (cp) genome of Adonis pseudoamurensis is reported for the first time in this study. The circular cp genome is 156,917 bp in length, consisting of a large single-copy region (86,262 bp), a small single-copy region (18,067 bp), and two inverted repeat regions (26,294 bp). The genome encodes 129 genes, comprising 84 protein-coding genes, 37 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Phylogenetic analysis showed that A. pseudoamurensis is closely related to A. amurensis.
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Affiliation(s)
- Xiao-Yan Zhang
- School of Food Science and Engineering, Tonghua Normal University, Tonghua, P.R. China
| | - Zhao-Lei Zhang
- Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, P.R. China
| | - Li-Qiu Zhang
- School of Medicine and Pharmacy, Tonghua Normal University, Tonghua, P.R. China
| | - Li-Fan Zhang
- School of Life Science, Tonghua Normal University, Tonghua, P.R. China
| | - Jun-Yi Zhu
- School of Life Science, Tonghua Normal University, Tonghua, P.R. China
| | - Chang-Song Xue
- School of Medicine and Pharmacy, Tonghua Normal University, Tonghua, P.R. China
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Conti F, Oberprieler C, Dorfner M, Schabel E, Nicoară R, Bartolucci F. Adonis fucensis ( A. sect. Adonanthe, Ranunculaceae), a New Species from the Central Apennines (Italy). BIOLOGY 2023; 12:biology12010118. [PMID: 36671810 PMCID: PMC9855803 DOI: 10.3390/biology12010118] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 01/09/2023] [Accepted: 01/09/2023] [Indexed: 01/14/2023]
Abstract
Adonis fucensis is herein described as a new species based on morphological and molecular analyses. It is endemic to one locality of the Central Apennines between Amplero and Fucino plains within the NATURA 2000 network in the SAC IT7110205 (Central Italy). The only discovered population is composed of 65 individuals and is at risk of extinction. The conservation status assessment according to IUCN categories and criteria is proposed and discussed. The new species belongs to A. sect. Adonanthe and is morphologically similar to A. volgensis (incl. A. transsilvanica), a species distributed in Hungary, Romania, Bulgaria, and Turkey as well as eastward to SW Siberia and Central Asia. Adonis fucensis can be distinguished from A. volgensis by larger cauline leaves, pentagonal with lobes lanceolate, larger stipules with more lobes and teeth, and larger flowers. Finally, an analytical key to Adonis species belonging to sect. Adonanthe distributed in Europe is presented.
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Affiliation(s)
- Fabio Conti
- Floristic Research Center of the Apennine, University of Camerino—Gran Sasso Laga National Park, San Colombo, 67021 Barisciano, Italy
| | - Christoph Oberprieler
- Evolutionary and Systematic Botany Group, Institute of Plant Biology, University of Regensburg, Universitätsstr. 31, D-93053 Regensburg, Germany
| | - Marco Dorfner
- Evolutionary and Systematic Botany Group, Institute of Plant Biology, University of Regensburg, Universitätsstr. 31, D-93053 Regensburg, Germany
| | - Erik Schabel
- Evolutionary and Systematic Botany Group, Institute of Plant Biology, University of Regensburg, Universitätsstr. 31, D-93053 Regensburg, Germany
| | - Roxana Nicoară
- Department of Taxonomy, Ecology and Nature Conservation, Institute of Biology Bucharest—Romanian Academy, Splaiul Independenței 296, District 6, 060031 Bucharest, Romania
| | - Fabrizio Bartolucci
- Floristic Research Center of the Apennine, University of Camerino—Gran Sasso Laga National Park, San Colombo, 67021 Barisciano, Italy
- Correspondence:
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