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Liu J, Dong H, Wang Y, Liu C, Wang Z, Xu Q, Li W, Zheng Y, Liang S, Zhao H, Li Y, Yin Z, Ding X. Genome-wide screening for virulent candidate secreted effector protein macromolecules in Magnaporthe oryzae. Int J Biol Macromol 2025; 304:140978. [PMID: 39952523 DOI: 10.1016/j.ijbiomac.2025.140978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2024] [Revised: 01/23/2025] [Accepted: 02/11/2025] [Indexed: 02/17/2025]
Abstract
Rice blast, caused by Magnaporthe oryzae (M. oryzae), is a severe threat to rice production globally. The pathogen counters rice immunity by secreting effectors that disrupt host defenses. In this study, we conducted a comprehensive genome-wide screening to identify candidate secreted effector proteins (CSEPs) in M. oryzae. Using a new bioinformatics pipeline, we predicted 577 CSEPs and analyzed their sequence features and functional annotations. We found that these effectors have distinct sequence signatures, such as high cysteine content, and are involved in infection and immune suppression. Phylogenetic analysis revealed M. oryzae's close relationship with other pathogenic fungi and the conservation of certain CSEPs across species. Expression analysis during infection indicated a role of CSEPs in the pathogenic process and the ability to inhibit plant necrosis. Finally, we validated the function of three candidate effector proteins through gene disruption mutant analysis including pathogenesis testing in rice. This study provides a foundation for understanding M. oryzae pathogenicity and may aid in developing resistance strategies against rice blast.
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Affiliation(s)
- Jiazong Liu
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China.
| | - Hongyang Dong
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China
| | - Yi Wang
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China
| | - Chunyan Liu
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China
| | - Ziming Wang
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China
| | - Qiyue Xu
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China
| | - Wendi Li
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China
| | - Yuxiu Zheng
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China
| | - Suochen Liang
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China
| | - Haipeng Zhao
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China.
| | - Yang Li
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China.
| | - Ziyi Yin
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China.
| | - Xinhua Ding
- State Key Laboratory of Wheat Improvement, Shandong Agricultural University, Taian 271018, Shandong, China.
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Ayala FM, Hernández-Sánchez IE, Chodasiewicz M, Wulff BBH, Svačina R. Engineering a One Health Super Wheat. ANNUAL REVIEW OF PHYTOPATHOLOGY 2024; 62:193-215. [PMID: 38857542 DOI: 10.1146/annurev-phyto-121423-042128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2024]
Abstract
Wheat is the predominant crop worldwide, contributing approximately 20% of protein and calories to the human diet. However, the yield potential of wheat faces limitations due to pests, diseases, and abiotic stresses. Although conventional breeding has improved desirable traits, the use of modern transgenesis technologies has been limited in wheat in comparison to other crops such as maize and soybean. Recent advances in wheat gene cloning and transformation technology now enable the development of a super wheat consistent with the One Health goals of sustainability, food security, and environmental stewardship. This variety combines traits to enhance pest and disease resistance, elevate grain nutritional value, and improve resilience to climate change. In this review, we explore ways to leverage current technologies to combine and transform useful traits into wheat. We also address the requirements of breeders and legal considerations such as patents and regulatory issues.
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Affiliation(s)
- Francisco M Ayala
- Bioceres Crop Solutions, Rosario, Santa Fe, Argentina
- Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; ,
| | - Itzell Eurídice Hernández-Sánchez
- Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; ,
| | - Monika Chodasiewicz
- Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; ,
| | - Brande B H Wulff
- Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; ,
| | - Radim Svačina
- Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; ,
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O'Hara T, Steed A, Goddard R, Gaurav K, Arora S, Quiroz-Chávez J, Ramírez-González R, Badgami R, Gilbert D, Sánchez-Martín J, Wingen L, Feng C, Jiang M, Cheng S, Dreisigacker S, Keller B, Wulff BBH, Uauy C, Nicholson P. The wheat powdery mildew resistance gene Pm4 also confers resistance to wheat blast. NATURE PLANTS 2024; 10:984-993. [PMID: 38898165 PMCID: PMC11208137 DOI: 10.1038/s41477-024-01718-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 05/06/2024] [Indexed: 06/21/2024]
Abstract
Wheat blast, caused by the fungus Magnaporthe oryzae, threatens global cereal production since its emergence in Brazil in 1985 and recently spread to Bangladesh and Zambia. Here we demonstrate that the AVR-Rmg8 effector, common in wheat-infecting isolates, is recognized by the gene Pm4, previously shown to confer resistance to specific races of Blumeria graminis f. sp. tritici, the cause of powdery mildew of wheat. We show that Pm4 alleles differ in their recognition of different AVR-Rmg8 alleles, and some confer resistance only in seedling leaves but not spikes, making it important to select for those alleles that function in both tissues. This study has identified a gene recognizing an important virulence factor present in wheat blast isolates in Bangladesh and Zambia and represents an important first step towards developing durably resistant wheat cultivars for these regions.
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Affiliation(s)
- Tom O'Hara
- John Innes Centre, Norwich Research Park, Norwich, UK
| | - Andrew Steed
- John Innes Centre, Norwich Research Park, Norwich, UK
| | | | - Kumar Gaurav
- John Innes Centre, Norwich Research Park, Norwich, UK
| | - Sanu Arora
- John Innes Centre, Norwich Research Park, Norwich, UK
| | | | | | | | - David Gilbert
- John Innes Centre, Norwich Research Park, Norwich, UK
| | - Javier Sánchez-Martín
- Department of Plant and Microbial Biology, Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland
- Department of Microbiology and Genetics, Spanish-Portuguese Agricultural Research Center (CIALE), University of Salamanca, Salamanca, Spain
| | - Luzie Wingen
- John Innes Centre, Norwich Research Park, Norwich, UK
| | - Cong Feng
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Mei Jiang
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Shifeng Cheng
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | - Beat Keller
- Department of Plant and Microbial Biology, Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland
| | - Brande B H Wulff
- John Innes Centre, Norwich Research Park, Norwich, UK
- Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
- Center for Desert Agriculture, KAUST, Thuwal, Saudi Arabia
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Wilson S, Dagvadorj B, Tam R, Murphy L, Schulz-Kroenert S, Heng N, Crean E, Greenwood J, Rathjen JP, Schwessinger B. Multiplexed effector screening for recognition by endogenous resistance genes using positive defense reporters in wheat protoplasts. THE NEW PHYTOLOGIST 2024; 241:2621-2636. [PMID: 38282212 DOI: 10.1111/nph.19555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 01/05/2024] [Indexed: 01/30/2024]
Abstract
Plant resistance (R) and pathogen avirulence (Avr) gene interactions play a vital role in pathogen resistance. Efficient molecular screening tools for crops lack far behind their model organism counterparts, yet they are essential to rapidly identify agriculturally important molecular interactions that trigger host resistance. Here, we have developed a novel wheat protoplast assay that enables efficient screening of Avr/R interactions at scale. Our assay allows access to the extensive gene pool of phenotypically described R genes because it does not require the overexpression of cloned R genes. It is suitable for multiplexed Avr screening, with interactions tested in pools of up to 50 Avr candidates. We identified Avr/R-induced defense genes to create a promoter-luciferase reporter. Then, we combined this with a dual-color ratiometric reporter system that normalizes read-outs accounting for experimental variability and Avr/R-induced cell death. Moreover, we introduced a self-replicative plasmid reducing the amount of plasmid used in the assay. Our assay increases the throughput of Avr candidate screening, accelerating the study of cellular defense signaling and resistance gene identification in wheat. We anticipate that our assay will significantly accelerate Avr identification for many wheat pathogens, leading to improved genome-guided pathogen surveillance and breeding of disease-resistant crops.
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Affiliation(s)
- Salome Wilson
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Bayantes Dagvadorj
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Rita Tam
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Lydia Murphy
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Sven Schulz-Kroenert
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Nigel Heng
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Emma Crean
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Julian Greenwood
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - John P Rathjen
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Benjamin Schwessinger
- Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
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