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Ocampo Osorio F, Alzate-Ricaurte S, Mejia Vallecilla TE, Cruz-Suarez GA. The anesthesiologist's guide to critically assessing machine learning research: a narrative review. BMC Anesthesiol 2024; 24:452. [PMID: 39695968 DOI: 10.1186/s12871-024-02840-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Accepted: 11/28/2024] [Indexed: 12/20/2024] Open
Abstract
Artificial Intelligence (AI), especially Machine Learning (ML), has developed systems capable of performing tasks that require human intelligence. In anesthesiology and other medical fields, AI applications can improve the precision and efficiency of daily clinical practice, and can also facilitate a personalized approach to patient care, which can lead to improved outcomes and quality of care. ML has been successfully applied in various settings of daily anesthesiology practice, such as predicting acute kidney injury, optimizing anesthetic doses, and managing postoperative nausea and vomiting. The critical evaluation of ML models in healthcare is crucial to assess their validity, safety, and clinical applicability. Evaluation metrics allow an objective statistical assessment of model performance. Tools such as Shapley Values (SHAP) help interpret how individual variables contribute to model predictions. Transparency in reporting is key in maintaining trust in these technologies and to ensure their use follows ethical principles, aiming to reduce safety concerns while also benefiting patients. Understanding evaluation metrics is essential, as they provide detailed information on model performance and their ability to discriminate between individual class rates. This article offers a comprehensive framework in assessing the validity, applicability, and limitations of models, guiding responsible and effective integration of ML technologies into clinical practice. A balance between innovation, patient safety and ethical considerations must be pursued.
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Affiliation(s)
- Felipe Ocampo Osorio
- Unidad de Inteligencia Artificial, Fundación Valle del Lili, Cra 98 Num.18-49, Cali, 760032, Valle del Cauca, Colombia
- Departamento de Salud Pública y Medicina Comunitaria, Universidad Icesi, Cali, 760000, Valle del Cauca, Colombia
- Centro de Investigaciones Clínicas, Fundación Valle del Lili, Cra 98 Num.18-49, Cali, 760032, Valle del Cauca, Colombia
| | - Sergio Alzate-Ricaurte
- Unidad de Inteligencia Artificial, Fundación Valle del Lili, Cra 98 Num.18-49, Cali, 760032, Valle del Cauca, Colombia
- Centro de Investigaciones Clínicas, Fundación Valle del Lili, Cra 98 Num.18-49, Cali, 760032, Valle del Cauca, Colombia
| | | | - Gustavo Adolfo Cruz-Suarez
- Unidad de Inteligencia Artificial, Fundación Valle del Lili, Cra 98 Num.18-49, Cali, 760032, Valle del Cauca, Colombia.
- Departamento de Salud Pública y Medicina Comunitaria, Universidad Icesi, Cali, 760000, Valle del Cauca, Colombia.
- Centro de Investigaciones Clínicas, Fundación Valle del Lili, Cra 98 Num.18-49, Cali, 760032, Valle del Cauca, Colombia.
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Abbas AB, Al-Gamei S, Naser A, Al-Oqab A, Alduhami K, Al-Sabri M, AL-Qasem A, Gharama M, Mohammed A, Ahmed S, Al-Glal M. Comparison of Hematological Parameters and the Associated Factors Among Women with and without Breast Cancer: A Case-Control Study. BREAST CANCER (DOVE MEDICAL PRESS) 2024; 16:877-885. [PMID: 39678025 PMCID: PMC11645957 DOI: 10.2147/bctt.s497313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 09/21/2024] [Accepted: 12/07/2024] [Indexed: 12/17/2024]
Abstract
Background Breast cancer (BC) is the most popular and dangerous cancer, with a high mortality rate. Hematological parameters are often used in routine diagnosis of numerous disorders. Therefore, the study aimed to evaluate hematological parameters amongst women with and without BC. Methodology Briefly, 200 blood samples (100 cases and 100 controls) were collected at Life Center of Breast Cancer Control, Ibb City, Yemen. The whole blood samples were tested immediately for complete blood count (CBC) parameters. Socio-demographic and reproductive characteristics were collected by using a standardized questionnaire. Kolmogorov-Smirnov test, Unpaired t-test, Mann-Whitney test, Fisher's exact test and chi-square test for trends were calculated using GraphPad Prism 8.0.1. P-values ≤0.05 were statistically significant. Results The mean and standard deviation (SD) revealed significant differences between BC group and the healthy control group attributed to the variables of age (P<0.0001), weight (P<0.0001), residence (P=0.0218), employment state (P<0.0001), economic state (P=0.0003), education levels (P<0.0001), regular exercise (P<0.0001) and a strict diet (P<0.0008). Marital state, marital age, number of births, and use of contraceptives demonstrated statistical significance (P<0.0001, P=0.0008, P=0.0009, and P<0.0001, respectively). Additionally, Hb, RBCs, WBCs count, neutrophils, lymphocytes and monocytes displayed significant differences (P=0.0393, P=0.0045, P=0.0327, P=0.0441, P=0.0098 and P<0.0001, respectively). Conclusion Hb, RBCs, WBCs, neutrophils, lymphocytes, monocytes and other parameters scored high points of evidence for BC surveillance. Further studies are required to evaluate hematological parameter differences and biochemical parameters after or during chemotherapy or mastectomy.
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Affiliation(s)
- Abdul Baset Abbas
- Medical Laboratories Department, Faculty of Medicine and Health Sciences, Ibb University, Ibb City, 70270, Yemen
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Shima Al-Gamei
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - AmatAlraheem Naser
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Ahlam Al-Oqab
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Khawla Alduhami
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Manal Al-Sabri
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Asmahan AL-Qasem
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Mona Gharama
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Amal Mohammed
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Shuaib Ahmed
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
| | - Malek Al-Glal
- Department of Medical Laboratories, Faculty of Medical Sciences, International Malaysian University, Ibb City, Yemen
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3
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Batool S, Zainab S. A comparative performance assessment of artificial intelligence based classifiers and optimized feature reduction technique for breast cancer diagnosis. Comput Biol Med 2024; 183:109215. [PMID: 39368313 DOI: 10.1016/j.compbiomed.2024.109215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 09/21/2024] [Accepted: 09/25/2024] [Indexed: 10/07/2024]
Abstract
Breast cancer (BC) is a catastrophic global health concern that causes numerous fatalities worldwide. Early detection of breast cancer may mitigate death rates; however, the prevailing diagnostic procedure for the malignancy necessitates numerous multifaceted laboratory tests that must be performed by medical professionals. In this article machine learning, a branch of Artificial Intelligence (AI), has been employed to improve cancer diagnosis, prognoses and survival rates while reducing the vulnerability of humans. Support Vector Machine (SVM), K-nearest Neighbors (KNN), Decision Tree (DT), Random Forest (RF) and Grey Wolf Optimizer (GWO) are implemented to prognosticate breast cancer. Comprehensive insights into the efficacy of these approaches for breast cancer prognosis are provided by the performance assessment that is accomplished using the confusion matrix, Receiver Operating Characteristic (ROC) curves and parallel coordinate plots. Both UCI (University of California Irvine) and SEER (Surveillance, Epidemiology and End Results) datasets have been utilized to confirm the investigation's findings and ensure their generalizability across diverse data sources. The results conclusively demonstrate that SVM is the cohort's most accurate classifier. With a stupendous accuracy rate of 99.1 %, the GWO-SVM compares favorably to all other algorithms. Furthermore, feature reduction approaches such as Minimum Redundancy Maximum Relevance (mRMR), ReliefF and Principal Component Analysis (PCA) are utilized. ReliefF has demonstrated exceptional effectiveness with a maximum accuracy of 98.2 %.
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Affiliation(s)
- Shumaila Batool
- Department of Mathematics, The Women University Multan, Multan, 61000, Pakistan.
| | - Saima Zainab
- Department of Mathematics, The Women University Multan, Multan, 61000, Pakistan.
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4
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L C M, P M JP. An optimal deep learning approach for breast cancer detection and classification with pre-trained CNN-based feature learning mechanism. J Biomol Struct Dyn 2024:1-16. [PMID: 39601679 DOI: 10.1080/07391102.2024.2430454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 04/16/2024] [Indexed: 11/29/2024]
Abstract
Breast cancer (BC) is the most dominant kind of cancer, which grows continuously and serves as the second highest cause of death for women worldwide. Early BC prediction helps decrease the BC mortality rate and improve treatment plans. Ultrasound is a popular and widely used imaging technique to detect BC at an earlier stage. Segmenting and classifying the tumors from ultrasound images is difficult. This paper proposes an optimal deep learning (DL)-based BC detection system with effective pre-trained transfer learning models-based segmentation and feature learning mechanisms. The proposed system comprises five phases: preprocessing, segmentation, feature learning, selection, and classification. Initially, the ultrasound images are collected from the breast ultrasound images (BUSI) dataset, and the preprocessing operations, such as noise removal using the Wiener filter and contrast enhancement using histogram equalization, are performed on the collected data to improve the dataset quality. Then, the segmentation of cancer-affected regions from the preprocessed data is done using a dilated convolution-based U-shaped network (DCUNet). The features are extracted or learned from the segmented images using spatial and channel attention including densely connected convolutional network-121 (SCADN-121). Afterwards, the system applies an enhanced cuckoo search optimization (ECSO) algorithm to select the features from the extracted feature set optimally. Finally, the ECSO-tuned long short-term memory (ECSO-LSTM) was utilized to classify BC into '3' classes, such as normal, benign, and malignant. The experimental outcomes proved that the proposed system attains 99.86% accuracy for BC classification, which is superior to the existing state-of-the-art methods.
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Affiliation(s)
- Meena L C
- Department of Computer Science and Engineering, R.M.D. Engineering College, Tiruvallur, India
| | - Joe Prathap P M
- Department of Computer Science and Engineering, R.M.D. Engineering College, Tiruvallur, India
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5
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Liao L, Aagaard EM. An open codebase for enhancing transparency in deep learning-based breast cancer diagnosis utilizing CBIS-DDSM data. Sci Rep 2024; 14:27318. [PMID: 39516557 PMCID: PMC11549440 DOI: 10.1038/s41598-024-78648-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Accepted: 11/04/2024] [Indexed: 11/16/2024] Open
Abstract
Accessible mammography datasets and innovative machine learning techniques are at the forefront of computer-aided breast cancer diagnosis. However, the opacity surrounding private datasets and the unclear methodology behind the selection of subset images from publicly available databases for model training and testing, coupled with the arbitrary incompleteness or inaccessibility of code, markedly intensifies the obstacles in replicating and validating the model's efficacy. These challenges, in turn, erect barriers for subsequent researchers striving to learn and advance this field. To address these limitations, we provide a pilot codebase covering the entire process from image preprocessing to model development and evaluation pipeline, utilizing the publicly available Curated Breast Imaging Subset of Digital Database for Screening Mammography (CBIS-DDSM) mass subset, including both full images and regions of interests (ROIs). We have identified that increasing the input size could improve the detection accuracy of malignant cases within each set of models. Collectively, our efforts hold promise in accelerating global software development for breast cancer diagnosis by leveraging our codebase and structure, while also integrating other advancements in the field.
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Affiliation(s)
- Ling Liao
- Biomedical Deep Learning LLC, St. Louis, MO, USA.
- Computational and Systems Biology, Washington University in St. Louis, St. Louis, MO, USA.
| | - Eva M Aagaard
- Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA
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6
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El-Latif EIA, El-Dosuky M, Darwish A, Hassanien AE. A deep learning approach for ovarian cancer detection and classification based on fuzzy deep learning. Sci Rep 2024; 14:26463. [PMID: 39488573 PMCID: PMC11531531 DOI: 10.1038/s41598-024-75830-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 10/08/2024] [Indexed: 11/04/2024] Open
Abstract
Different oncologists make their own decisions about the detection and classification of the type of ovarian cancer from histopathological whole slide images. However, it is necessary to have an automated system that is more accurate and standardized for decision-making, which is essential for early detection of ovarian cancer. To help doctors, an automated detection and classification of ovarian cancer system is proposed. This model starts by extracting the main features from the histopathology images based on the ResNet-50 model to detect and classify the cancer. Then, recursive feature elimination based on a decision tree is introduced to remove unnecessary features extracted during the feature extraction process. Adam optimizers were implemented to optimize the network's weights during training data. Finally, the advantages of combining deep learning and fuzzy logic are combined to classify the images of ovarian cancer. The dataset consists of 288 hematoxylin and eosin (H&E) stained whole slides with clinical information from 78 patients. H&E-stained Whole Slide Images (WSIs), including 162 effective and 126 invalid WSIs were obtained from different tissue blocks of post-treatment specimens. Experimental results can diagnose ovarian cancer with a potential accuracy of 98.99%, sensitivity of 99%, specificity of 98.96%, and F1-score of 98.99%. The results show promising results indicating the potential of using fuzzy deep-learning classifiers for predicting ovarian cancer.
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Affiliation(s)
| | - Mohamed El-Dosuky
- Computer Science Department, Arab East Colleges, Riyadh, Saudi Arabia
- Computer Science Department, Faculty of Computers and Information, Mansoura University, Mansoura, Egypt
| | - Ashraf Darwish
- Faculty of Science, Helwan University, Cairo, Egypt
- Scientific Research school of Egypt (SRSEG), Cairo, Egypt
| | - Aboul Ella Hassanien
- Faculty of Computers and Artificial Intelligence, Cairo University, Cairo, Egypt
- Scientific Research school of Egypt (SRSEG), Cairo, Egypt
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Sahoo G, Nayak AK, Tripathy PK, Panigrahi A, Pati A, Sahu B, Mahanty C, Mallik S. Predicting Breast Cancer Relapse from Histopathological Images with Ensemble Machine Learning Models. Curr Oncol 2024; 31:6577-6597. [PMID: 39590117 PMCID: PMC11592466 DOI: 10.3390/curroncol31110486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 10/21/2024] [Accepted: 10/22/2024] [Indexed: 11/28/2024] Open
Abstract
Relapse and metastasis occur in 30-40% of breast cancer patients, even after targeted treatments like trastuzumab for HER2-positive breast cancer. Accurate individual prognosis is essential for determining appropriate adjuvant treatment and early intervention. This study aims to enhance relapse and metastasis prediction using an innovative framework with machine learning (ML) and ensemble learning (EL) techniques. The developed framework is analyzed using The Cancer Genome Atlas (TCGA) data, which has 123 HER2-positive breast cancer patients. Our two-stage experimental approach first applied six basic ML models (support vector machine, logistic regression, decision tree, random forest, adaptive boosting, and extreme gradient boosting) and then ensembled these models using weighted averaging, soft voting, and hard voting techniques. The weighted averaging ensemble approach achieved enhanced performances of 88.46% accuracy, 89.74% precision, 94.59% sensitivity, 73.33% specificity, 92.11% F-Value, 71.07% Mathew's correlation coefficient, and an AUC of 0.903. This framework enables the accurate prediction of relapse and metastasis in HER2-positive breast cancer patients using H&E images and clinical data, thereby assisting in better treatment decision-making.
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Affiliation(s)
- Ghanashyam Sahoo
- Department of Computer Science and Engineering, Siksha ‘O’ Anusandhan (Deemed to Be University), Bhubaneswar 751030, India; (G.S.); or (A.P.)
| | - Ajit Kumar Nayak
- Department of Computer Science and Information Technology, Siksha ‘O’ Anusandhan (Deemed to Be University), Bhubaneswar 751030, India;
| | | | - Amrutanshu Panigrahi
- Department of Computer Science and Engineering, Siksha ‘O’ Anusandhan (Deemed to Be University), Bhubaneswar 751030, India; (G.S.); or (A.P.)
| | - Abhilash Pati
- Department of Computer Science and Engineering, Siksha ‘O’ Anusandhan (Deemed to Be University), Bhubaneswar 751030, India; (G.S.); or (A.P.)
| | - Bibhuprasad Sahu
- Department of Information Technology, Vardhaman College of Engineering (Autonomous), Hyderabad 501218, India;
| | - Chandrakanta Mahanty
- Department of Computer Science and Engineering, GITAM Deemed to Be University, Visakhapatnam 530045, India
| | - Saurav Mallik
- Department of Environmental Health, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA;
- Department of Pharmacology & Toxicology, University of Arizona, Tucson, AZ 85721, USA
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8
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Kojja V, Rudraram V, Kancharla B, Siva H, Tangutur AD, Nayak PK. Identification of phytoestrogens as sirtuin inhibitor against breast cancer: Multitargeted approach. Comput Biol Chem 2024; 112:108168. [PMID: 39127010 DOI: 10.1016/j.compbiolchem.2024.108168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 07/30/2024] [Accepted: 07/31/2024] [Indexed: 08/12/2024]
Abstract
Despite progress in diagnosis and treatment strategies, breast cancer remains a primary risk to female health as indicated by second most cancer-deaths globally caused by this cancer. High risk mutation is linked to prognosis of breast cancer. Due to high resistance of breast cancer against current therapies, there is necessity of novel treatment strategies. Sirtuins are signaling proteins belonging to histone deacetylase class III family, known to control several cellular processes. Therefore, targeting sirtuins could be one of the approaches to treat breast cancer. Several plants synthesize phytoestrogens which exhibit structural and physiological similarities to estrogens and have been recognized to possess anticancer activity. In our study, we investigated several phytoestrogens for sirtuin inhibition by conducting molecular docking studies, and in-vitro studies against breast cancer cell lines. In molecular docking studies, we identified coumestrol possessing high binding energy with sirtuin proteins 1-3 as compared to other phytoestrogens. The molecular dynamic studies showed stable interaction of ligand and protein with higher affinity at sirtuin proteins 1-3 binding sites. In cell proliferation assay and colony formation assay using breast cancer cell lines (MCF-7 and MDAMB-231) coumestrol caused significant reduction in cell proliferation and number of colonies formed. Further, the flow cytometric analysis showed that coumestrol induces intracellular reactive oxygen species and the western blot analysis revealed reduction in the level of SIRT-1 expression in breast cancer cell lines. In conclusion, in-silico data and in-vitro studies suggest that the phytoestrogen coumestrol has sirtuin inhibitory activity against breast cancer.
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Affiliation(s)
- Venkateswarlu Kojja
- Department of Pharmaceutical Engineering and Technology, Indian Institute of Technology, Banaras Hindu University, Varanasi 221005, India
| | - Vanitha Rudraram
- Department of Applied Biology, CSIR-Indian Institute of Chemical Technology, Hyderabad 500007, India; Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh 201002, India
| | - Bhanukiran Kancharla
- Department of Pharmaceutical Engineering and Technology, Indian Institute of Technology, Banaras Hindu University, Varanasi 221005, India
| | - Hemalatha Siva
- Department of Pharmaceutical Engineering and Technology, Indian Institute of Technology, Banaras Hindu University, Varanasi 221005, India
| | - Anjana Devi Tangutur
- Department of Applied Biology, CSIR-Indian Institute of Chemical Technology, Hyderabad 500007, India; Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh 201002, India.
| | - Prasanta Kumar Nayak
- Department of Pharmaceutical Engineering and Technology, Indian Institute of Technology, Banaras Hindu University, Varanasi 221005, India.
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Islam T, Hoque ME, Ullah M, Islam T, Nishu NA, Islam R. CNN-based deep learning approach for classification of invasive ductal and metastasis types of breast carcinoma. Cancer Med 2024; 13:e70069. [PMID: 39215495 PMCID: PMC11364780 DOI: 10.1002/cam4.70069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Revised: 04/04/2024] [Accepted: 07/23/2024] [Indexed: 09/04/2024] Open
Abstract
OBJECTIVE Breast cancer is one of the leading cancer causes among women worldwide. It can be classified as invasive ductal carcinoma (IDC) or metastatic cancer. Early detection of breast cancer is challenging due to the lack of early warning signs. Generally, a mammogram is recommended by specialists for screening. Existing approaches are not accurate enough for real-time diagnostic applications and thus require better and smarter cancer diagnostic approaches. This study aims to develop a customized machine-learning framework that will give more accurate predictions for IDC and metastasis cancer classification. METHODS This work proposes a convolutional neural network (CNN) model for classifying IDC and metastatic breast cancer. The study utilized a large-scale dataset of microscopic histopathological images to automatically perceive a hierarchical manner of learning and understanding. RESULTS It is evident that using machine learning techniques significantly (15%-25%) boost the effectiveness of determining cancer vulnerability, malignancy, and demise. The results demonstrate an excellent performance ensuring an average of 95% accuracy in classifying metastatic cells against benign ones and 89% accuracy was obtained in terms of detecting IDC. CONCLUSIONS The results suggest that the proposed model improves classification accuracy. Therefore, it could be applied effectively in classifying IDC and metastatic cancer in comparison to other state-of-the-art models.
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Affiliation(s)
- Tobibul Islam
- Department of Biomedical EngineeringMilitary Institute of Science and TechnologyDhakaBangladesh
| | - Md Enamul Hoque
- Department of Biomedical EngineeringMilitary Institute of Science and TechnologyDhakaBangladesh
| | - Mohammad Ullah
- Center for Advance Intelligent MaterialsUniversiti Malaysia PahangKuantanMalaysia
| | - Toufiqul Islam
- Department of SurgeryM Abdur Rahim Medical CollegeDinajpurBangladesh
| | | | - Rabiul Islam
- Department of Electrical and Computer EngineeringTexas A&M UniversityCollege StationTexasUSA
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Basaad A, Basurra S, Vakaj E, Eldaly AK, Abdelsamea MM. A BERT-GNN Approach for Metastatic Breast Cancer Prediction Using Histopathology Reports. Diagnostics (Basel) 2024; 14:1365. [PMID: 39001255 PMCID: PMC11241069 DOI: 10.3390/diagnostics14131365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 06/21/2024] [Accepted: 06/25/2024] [Indexed: 07/16/2024] Open
Abstract
Metastatic breast cancer (MBC) continues to be a leading cause of cancer-related deaths among women. This work introduces an innovative non-invasive breast cancer classification model designed to improve the identification of cancer metastases. While this study marks the initial exploration into predicting MBC, additional investigations are essential to validate the occurrence of MBC. Our approach combines the strengths of large language models (LLMs), specifically the bidirectional encoder representations from transformers (BERT) model, with the powerful capabilities of graph neural networks (GNNs) to predict MBC patients based on their histopathology reports. This paper introduces a BERT-GNN approach for metastatic breast cancer prediction (BG-MBC) that integrates graph information derived from the BERT model. In this model, nodes are constructed from patient medical records, while BERT embeddings are employed to vectorise representations of the words in histopathology reports, thereby capturing semantic information crucial for classification by employing three distinct approaches (namely univariate selection, extra trees classifier for feature importance, and Shapley values to identify the features that have the most significant impact). Identifying the most crucial 30 features out of 676 generated as embeddings during model training, our model further enhances its predictive capabilities. The BG-MBC model achieves outstanding accuracy, with a detection rate of 0.98 and an area under curve (AUC) of 0.98, in identifying MBC patients. This remarkable performance is credited to the model's utilisation of attention scores generated by the LLM from histopathology reports, effectively capturing pertinent features for classification.
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Affiliation(s)
- Abdullah Basaad
- School of Computing and Digital Technology, Birmingham City University, Birmingham B4 7XG, UK; (A.B.); (S.B.); (E.V.)
| | - Shadi Basurra
- School of Computing and Digital Technology, Birmingham City University, Birmingham B4 7XG, UK; (A.B.); (S.B.); (E.V.)
| | - Edlira Vakaj
- School of Computing and Digital Technology, Birmingham City University, Birmingham B4 7XG, UK; (A.B.); (S.B.); (E.V.)
| | - Ahmed Karam Eldaly
- Department of Computer Science, University of Exeter, North Park Road, Exeter EX4 4QF, UK;
| | - Mohammed M. Abdelsamea
- Department of Computer Science, University of Exeter, North Park Road, Exeter EX4 4QF, UK;
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Nicolis O, De Los Angeles D, Taramasco C. A contemporary review of breast cancer risk factors and the role of artificial intelligence. Front Oncol 2024; 14:1356014. [PMID: 38699635 PMCID: PMC11063273 DOI: 10.3389/fonc.2024.1356014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Accepted: 03/25/2024] [Indexed: 05/05/2024] Open
Abstract
Background Breast cancer continues to be a significant global health issue, necessitating advancements in prevention and early detection strategies. This review aims to assess and synthesize research conducted from 2020 to the present, focusing on breast cancer risk factors, including genetic, lifestyle, and environmental aspects, as well as the innovative role of artificial intelligence (AI) in prediction and diagnostics. Methods A comprehensive literature search, covering studies from 2020 to the present, was conducted to evaluate the diversity of breast cancer risk factors and the latest advances in Artificial Intelligence (AI) in this field. The review prioritized high-quality peer-reviewed research articles and meta-analyses. Results Our analysis reveals a complex interplay of genetic, lifestyle, and environmental risk factors for breast cancer, with significant variability across different populations. Furthermore, AI has emerged as a promising tool in enhancing the accuracy of breast cancer risk prediction and the personalization of prevention strategies. Conclusion The review highlights the necessity for personalized breast cancer prevention and detection approaches that account for individual risk factor profiles. It underscores the potential of AI to revolutionize these strategies, offering clear recommendations for future research directions and clinical practice improvements.
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Affiliation(s)
- Orietta Nicolis
- Engineering Faculty, Universidad Andres Bello, Viña del Mar, Chile
- Centro para la Prevención y Control del Cáncer (CECAN), Santiago, Chile
| | - Denisse De Los Angeles
- Engineering Faculty, Universidad Andres Bello, Viña del Mar, Chile
- Centro para la Prevención y Control del Cáncer (CECAN), Santiago, Chile
| | - Carla Taramasco
- Engineering Faculty, Universidad Andres Bello, Viña del Mar, Chile
- Centro para la Prevención y Control del Cáncer (CECAN), Santiago, Chile
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12
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Vizza P, Aracri F, Guzzi PH, Gaspari M, Veltri P, Tradigo G. Machine learning pipeline to analyze clinical and proteomics data: experiences on a prostate cancer case. BMC Med Inform Decis Mak 2024; 24:93. [PMID: 38584282 PMCID: PMC11000316 DOI: 10.1186/s12911-024-02491-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Accepted: 03/25/2024] [Indexed: 04/09/2024] Open
Abstract
Proteomic-based analysis is used to identify biomarkers in blood samples and tissues. Data produced by devices such as mass spectrometry requires platforms to identify and quantify proteins (or peptides). Clinical information can be related to mass spectrometry data to identify diseases at an early stage. Machine learning techniques can be used to support physicians and biologists in studying and classifying pathologies. We present the application of machine learning techniques to define a pipeline aimed at studying and classifying proteomics data enriched using clinical information. The pipeline allows users to relate established blood biomarkers with clinical parameters and proteomics data. The proposed pipeline entails three main phases: (i) feature selection, (ii) models training, and (iii) models ensembling. We report the experience of applying such a pipeline to prostate-related diseases. Models have been trained on several biological datasets. We report experimental results about two datasets that result from the integration of clinical and mass spectrometry-based data in the contexts of serum and urine analysis. The pipeline receives input data from blood analytes, tissue samples, proteomic analysis, and urine biomarkers. It then trains different models for feature selection, classification and voting. The presented pipeline has been applied on two datasets obtained in a 2 years research project which aimed to extract hidden information from mass spectrometry, serum, and urine samples from hundreds of patients. We report results on analyzing prostate datasets serum with 143 samples, including 79 PCa and 84 BPH patients, and an urine dataset with 121 samples, including 67 PCa and 54 BPH patients. As results pipeline allowed to identify interesting peptides in the two datasets, 6 for the first one and 2 for the second one. The best model for both serum (AUC=0.87, Accuracy=0.83, F1=0.81, Sensitivity=0.84, Specificity=0.81) and urine (AUC=0.88, Accuracy=0.83, F1=0.83, Sensitivity=0.85, Specificity=0.80) datasets showed good predictive performances. We made the pipeline code available on GitHub and we are confident that it will be successfully adopted in similar clinical setups.
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Affiliation(s)
- Patrizia Vizza
- Department of Surgical and Medical Sciences, Magna Græcia University, 88100, Catanzaro, Italy
| | - Federica Aracri
- Department of Surgical and Medical Sciences, Magna Græcia University, 88100, Catanzaro, Italy.
| | - Pietro Hiram Guzzi
- Department of Surgical and Medical Sciences, Magna Græcia University, 88100, Catanzaro, Italy
| | - Marco Gaspari
- Department of Experimental and Clinical Medicine, Magna Græcia University, 88100, Catanzaro, Italy
| | - Pierangelo Veltri
- Department of Computers, Modeling, Electronics and Systems Engineering, University of Calabria, 87036, Rende, Italy
| | - Giuseppe Tradigo
- Department of Theoretical and Applied Sciences, eCampus University, 22060, Novedrate, CO, Italy
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Li S, Zhang S, Xu J, Guo R, Allam AA, Rady A, Wang Z, Qu R. Photodegradation of polycyclic aromatic hydrocarbons on soil surface: Kinetics and quantitative structure-activity relationship (QSAR) model development. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 345:123541. [PMID: 38342434 DOI: 10.1016/j.envpol.2024.123541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 02/07/2024] [Accepted: 02/08/2024] [Indexed: 02/13/2024]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) have attracted much attention because of their widespread existence and toxicity. Photodegradation is the main natural decay process of PAHs in soil. The photodegradation kinetics of benzopyrene (BaP) on 16 kinds of soils and 10 kinds of PAHs on Hebei (HE) soil were studied. The results showed that BaP had the highest degradation rate in Shaanxi (SN) soil (kobs = 0.11 min-1), and anthracene (Ant) was almost completely degraded after 16 h of irradiation in HE soil. Two quantitative structure-activity relationship (QSAR) models were established by the multiple linear regression (MLR) method. The developed QSAR models have good stability, robustness and predictability. The model revealed that the main factors affecting the photodegradation of PAHs are soil organic matter (SOM) and the energy gap between the highest occupied molecular orbital and the lowest unoccupied molecular orbital (Egap). SOM can function as a photosensitizer to induce the production of active species for photodegradation, thus favoring the photodegradation of PAHs. In addition, compounds with lower Egap are less stable and more reactive, and thus are more prone to photodegradation. Finally, the QSAR model was optimized using machine learning approach. The results of this study provide basic information on the photodegradation of PAHs and have important significance for predicting the environmental behavior of PAHs in soil.
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Affiliation(s)
- Shuyi Li
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, PR China
| | - Shengnan Zhang
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, PR China
| | - Jianqiao Xu
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, PR China
| | - Ruixue Guo
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, PR China
| | - Ahmed A Allam
- Zoology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
| | - Ahmed Rady
- Department of Zoology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Zunyao Wang
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, PR China
| | - Ruijuan Qu
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, PR China.
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Aminizadeh S, Heidari A, Dehghan M, Toumaj S, Rezaei M, Jafari Navimipour N, Stroppa F, Unal M. Opportunities and challenges of artificial intelligence and distributed systems to improve the quality of healthcare service. Artif Intell Med 2024; 149:102779. [PMID: 38462281 DOI: 10.1016/j.artmed.2024.102779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 12/30/2023] [Accepted: 01/14/2024] [Indexed: 03/12/2024]
Abstract
The healthcare sector, characterized by vast datasets and many diseases, is pivotal in shaping community health and overall quality of life. Traditional healthcare methods, often characterized by limitations in disease prevention, predominantly react to illnesses after their onset rather than proactively averting them. The advent of Artificial Intelligence (AI) has ushered in a wave of transformative applications designed to enhance healthcare services, with Machine Learning (ML) as a noteworthy subset of AI. ML empowers computers to analyze extensive datasets, while Deep Learning (DL), a specific ML methodology, excels at extracting meaningful patterns from these data troves. Despite notable technological advancements in recent years, the full potential of these applications within medical contexts remains largely untapped, primarily due to the medical community's cautious stance toward novel technologies. The motivation of this paper lies in recognizing the pivotal role of the healthcare sector in community well-being and the necessity for a shift toward proactive healthcare approaches. To our knowledge, there is a notable absence of a comprehensive published review that delves into ML, DL and distributed systems, all aimed at elevating the Quality of Service (QoS) in healthcare. This study seeks to bridge this gap by presenting a systematic and organized review of prevailing ML, DL, and distributed system algorithms as applied in healthcare settings. Within our work, we outline key challenges that both current and future developers may encounter, with a particular focus on aspects such as approach, data utilization, strategy, and development processes. Our study findings reveal that the Internet of Things (IoT) stands out as the most frequently utilized platform (44.3 %), with disease diagnosis emerging as the predominant healthcare application (47.8 %). Notably, discussions center significantly on the prevention and identification of cardiovascular diseases (29.2 %). The studies under examination employ a diverse range of ML and DL methods, along with distributed systems, with Convolutional Neural Networks (CNNs) being the most commonly used (16.7 %), followed by Long Short-Term Memory (LSTM) networks (14.6 %) and shallow learning networks (12.5 %). In evaluating QoS, the predominant emphasis revolves around the accuracy parameter (80 %). This study highlights how ML, DL, and distributed systems reshape healthcare. It contributes to advancing healthcare quality, bridging the gap between technology and medical adoption, and benefiting practitioners and patients.
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Affiliation(s)
- Sarina Aminizadeh
- Medical Faculty, Tabriz Branch, Islamic Azad University, Tabriz, Iran
| | - Arash Heidari
- Department of Software Engineering, Haliç University, Istanbul 34060, Turkiye.
| | - Mahshid Dehghan
- Tabriz University of Medical Sciences, Faculty of Medicine, Tabriz, Iran
| | - Shiva Toumaj
- Urmia University of Medical Sciences, Urmia, Iran
| | - Mahsa Rezaei
- Tabriz University of Medical Sciences, Faculty of Surgery, Tabriz, Iran
| | - Nima Jafari Navimipour
- Future Technology Research Center, National Yunlin University of Science and Technology, Douliou 64002, Taiwan; Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Kadir Has University, Istanbul, Türkiye.
| | - Fabio Stroppa
- Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Kadir Has University, Istanbul, Türkiye
| | - Mehmet Unal
- Department of Mathematics, School of Engineering and Natural Sciences, Bahçeşehir University, Istanbul, Turkiye
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Duan H, Zhang Y, Qiu H, Fu X, Liu C, Zang X, Xu A, Wu Z, Li X, Zhang Q, Zhang Z, Cui F. Machine learning-based prediction model for distant metastasis of breast cancer. Comput Biol Med 2024; 169:107943. [PMID: 38211382 DOI: 10.1016/j.compbiomed.2024.107943] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 12/10/2023] [Accepted: 01/01/2024] [Indexed: 01/13/2024]
Abstract
BACKGROUND Breast cancer is the most prevalent malignancy in women. Advanced breast cancer can develop distant metastases, posing a severe threat to the life of patients. Because the clinical warning signs of distant metastasis are manifested in the late stage of the disease, there is a need for better methods of predicting metastasis. METHODS First, we screened breast cancer distant metastasis target genes by performing difference analysis and weighted gene co-expression network analysis (WGCNA) on the selected datasets, and performed analyses such as GO enrichment analysis on these target genes. Secondly, we screened breast cancer distant metastasis target genes by LASSO regression analysis and performed correlation analysis and other analyses on these biomarkers. Finally, we constructed several breast cancer distant metastasis prediction models based on Logistic Regression (LR) model, Random Forest (RF) model, Support Vector Machine (SVM) model, Gradient Boosting Decision Tree (GBDT) model and eXtreme Gradient Boosting (XGBoost) model, and selected the optimal model from them. RESULTS Several 21-gene breast cancer distant metastasis prediction models were constructed, with the best performance of the model constructed based on the random forest model. This model accurately predicted the emergence of distant metastases from breast cancer, with an accuracy of 93.6 %, an F1-score of 88.9 % and an AUC value of 91.3 % on the validation set. CONCLUSION Our findings have the potential to be translated into a point-of-care prognostic analysis to reduce breast cancer mortality.
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Affiliation(s)
- Hao Duan
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Yu Zhang
- Beidahuang Industry Group General Hospital, Harbin, 150001, China
| | - Haoye Qiu
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Xiuhao Fu
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Chunling Liu
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Xiaofeng Zang
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Anqi Xu
- The First School of Clinical Medicine, Shandong University of Traditional Chinese Medicine, Jinan, 250014, China
| | - Ziyue Wu
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Xingfeng Li
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Qingchen Zhang
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China
| | - Zilong Zhang
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China.
| | - Feifei Cui
- School of Computer Science and Technology, Hainan University, Haikou, 570228, China.
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16
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Miao S, Jia H, Huang W, Cheng K, Zhou W, Wang R. Subcutaneous fat predicts bone metastasis in breast cancer: A novel multimodality-based deep learning model. Cancer Biomark 2024; 39:171-185. [PMID: 38043007 PMCID: PMC11091603 DOI: 10.3233/cbm-230219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Accepted: 10/24/2023] [Indexed: 12/04/2023]
Abstract
OBJECTIVES This study explores a deep learning (DL) approach to predicting bone metastases in breast cancer (BC) patients using clinical information, such as the fat index, and features like Computed Tomography (CT) images. METHODS CT imaging data and clinical information were collected from 431 BC patients who underwent radical surgical resection at Harbin Medical University Cancer Hospital. The area of muscle and adipose tissue was obtained from CT images at the level of the eleventh thoracic vertebra. The corresponding histograms of oriented gradients (HOG) and local binary pattern (LBP) features were extracted from the CT images, and the network features were derived from the LBP and HOG features as well as the CT images through deep learning (DL). The combination of network features with clinical information was utilized to predict bone metastases in BC patients using the Gradient Boosting Decision Tree (GBDT) algorithm. Regularized Cox regression models were employed to identify independent prognostic factors for bone metastasis. RESULTS The combination of clinical information and network features extracted from LBP features, HOG features, and CT images using a convolutional neural network (CNN) yielded the best performance, achieving an AUC of 0.922 (95% confidence interval [CI]: 0.843-0.964, P< 0.01). Regularized Cox regression results indicated that the subcutaneous fat index was an independent prognostic factor for bone metastasis in breast cancer (BC). CONCLUSION Subcutaneous fat index could predict bone metastasis in BC patients. Deep learning multimodal algorithm demonstrates superior performance in assessing bone metastases in BC patients.
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Affiliation(s)
- Shidi Miao
- School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, Heilongjiang, China
| | - Haobo Jia
- School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, Heilongjiang, China
| | - Wenjuan Huang
- School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, Heilongjiang, China
- Department of Internal Medicine, Harbin Medical University Cancer Hospital, Harbin Medical University, Harbin, Heilongjiang, China
| | - Ke Cheng
- School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, Heilongjiang, China
| | - Wenjin Zhou
- School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, Heilongjiang, China
| | - Ruitao Wang
- Department of Internal Medicine, Harbin Medical University Cancer Hospital, Harbin Medical University, Harbin, Heilongjiang, China
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Vanmathi P, Jose D. An ensemble-based serial cascaded attention network and improved variational auto encoder for breast cancer prognosis prediction using data. Comput Methods Biomech Biomed Engin 2024; 27:98-115. [PMID: 38006210 DOI: 10.1080/10255842.2023.2280883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 11/02/2023] [Indexed: 11/26/2023]
Abstract
Breast cancer is one of the most common types of cancer in women and it produces a huge amount of death rate in the world. Early recognition is lessening its impact. The early recognition of breast cancer could convince patients to receive surgical therapy, which will significantly improve the chance of restoration. This information is used by the machine learning technique to find links between them and appraise our forecasts of fresh occurrences. Later recognition of breast cancer can lead to death. An accurate prescient framework for breast cancer prediction is urgently needed in the current era. In order to accomplish the objective, an adaptive ensemble model is proposed for breast cancer prognosis prediction using data. At the initial stage, the raw data are fetched from benchmark datasets. It is then followed by data cleaning and preprocessing. Subsequently, the pre-processed data is fed into the Improved Variational Autoencoder (IVAE), where the deep features are extracted. Finally, the resultant features are given as input to the Ensemble-based Serial Cascaded Attention Network (ESCANet), which is built with Deep Temporal Convolution Network (DTCN), Bi-directional Long Short-Term Memory (BiLSTM), and Recurrent Neural Network (RNN). The effectiveness of the model is validated and compared with conventional methodologies. Therefore, the results elucidate that the proposed methodology achieves extensive results; thus, it increases the system's efficiency.
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Affiliation(s)
- P Vanmathi
- Full time Research Scholar, Department of ECE, KCG College of Technology, Karapakkam, Chennai, Tamil Nadu, India
| | - Deepa Jose
- Professor, Department of ECE, KCG College of Technology, Karapakkam, Chennai, Tamil Nadu, India
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Wang J, Liu R, Chen H, Chen A, Chen L. Ent-16 β,17-dihydroxy-kauran-19-oic acid (DKA), a kaurane diterpenoid from Sigesbeckia pubescens(Makino) Makino, inhibits the migration of MDA-MB-231 breast cancer. Nat Prod Res 2023:1-6. [PMID: 38006329 DOI: 10.1080/14786419.2023.2287177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 11/19/2023] [Indexed: 11/27/2023]
Abstract
Ent-kaurane diterpenoids were studied as a biologically active ingredient group of Sigesbeckia pubescens (Makino) Makino. Here, five known ent-kaurane diterpenoids were isolated and identified, named ent-16β,17-dihydroxy-kauran-19-oic acid (1), ent-16β,17-dihydroxy-kauran-19-oate (2), ent-18-acetoxy-17-hydroxykauran-19-oic acid (3), ent-16β,17,18-trihydroxy-kauran-19 -oic acid (4), and ent-17-hydroxy-kauran-16βH-19-oic acid (5). Their inhibitory effects of these compounds on MDA-MB-231 breast cancer migration were firstly tested in a chemotaxis invasion assay. Among them, compound 1 (DKA) showed superior inhibitory activities with IC50 value of 1.96 µM. Then, a wound healing assay and BALB/c nude mice were used for further studying the inhibitory activity of DKA on MDA-MB-231 breast cancer migration in vitro and in vivo, respectively. The wound healing assay showed that DKA (1, 5, and 25 μM) can significantly inhibit cell migration and the mouse model of lung metastasis showed that DKA (2.5, 5, and 10 mg/kg) could strongly suppress the lung metastasis of MDA-MB-231 breast cancer cells.
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Affiliation(s)
- Jianbin Wang
- Institute of Translational Medicine, School of Medicine, Yangzhou University, Yangzhou, China
- Jiangsu Key Laboratory of Integrated Traditional Chinese and Western Medicine for Prevention and Treatment of Senile Diseases, Yangzhou University, Yangzhou, China
| | - Rongxin Liu
- Institute of Translational Medicine, School of Medicine, Yangzhou University, Yangzhou, China
| | - Hao Chen
- Institute of Translational Medicine, School of Medicine, Yangzhou University, Yangzhou, China
| | - Anqi Chen
- Institute of Translational Medicine, School of Medicine, Yangzhou University, Yangzhou, China
| | - Li Chen
- Institute of Translational Medicine, School of Medicine, Yangzhou University, Yangzhou, China
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Alrowais F, Alotaibi FA, Hassan AQA, Marzouk R, Alnfiai MM, Sayed A. Enhanced Pelican Optimization Algorithm with Deep Learning-Driven Mitotic Nuclei Classification on Breast Histopathology Images. Biomimetics (Basel) 2023; 8:538. [PMID: 37999179 PMCID: PMC10669319 DOI: 10.3390/biomimetics8070538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Revised: 11/01/2023] [Accepted: 11/07/2023] [Indexed: 11/25/2023] Open
Abstract
Breast cancer (BC) is a prevalent disease worldwide, and accurate diagnoses are vital for successful treatment. Histopathological (HI) inspection, particularly the detection of mitotic nuclei, has played a pivotal function in the prognosis and diagnosis of BC. It includes the detection and classification of mitotic nuclei within breast tissue samples. Conventionally, the detection of mitotic nuclei has been a subjective task and is time-consuming for pathologists to perform manually. Automatic classification using computer algorithms, especially deep learning (DL) algorithms, has been developed as a beneficial alternative. DL and CNNs particularly have shown outstanding performance in different image classification tasks, including mitotic nuclei classification. CNNs can learn intricate hierarchical features from HI images, making them suitable for detecting subtle patterns related to the mitotic nuclei. In this article, we present an Enhanced Pelican Optimization Algorithm with a Deep Learning-Driven Mitotic Nuclei Classification (EPOADL-MNC) technique on Breast HI. This developed EPOADL-MNC system examines the histopathology images for the classification of mitotic and non-mitotic cells. In this presented EPOADL-MNC technique, the ShuffleNet model can be employed for the feature extraction method. In the hyperparameter tuning procedure, the EPOADL-MNC algorithm makes use of the EPOA system to alter the hyperparameters of the ShuffleNet model. Finally, we used an adaptive neuro-fuzzy inference system (ANFIS) for the classification and detection of mitotic cell nuclei on histopathology images. A series of simulations took place to validate the improved detection performance of the EPOADL-MNC technique. The comprehensive outcomes highlighted the better outcomes of the EPOADL-MNC algorithm compared to existing DL techniques with a maximum accuracy of 97.83%.
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Affiliation(s)
- Fadwa Alrowais
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Faiz Abdullah Alotaibi
- Department of Information Science, College of Humanities and Social Sciences, King Saud University, P.O. Box 28095, Riyadh 11437, Saudi Arabia
| | - Abdulkhaleq Q. A. Hassan
- Department of English, College of Science and Arts at Mahayil, King Khalid University, Abha 62529, Saudi Arabia
| | - Radwa Marzouk
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Mrim M. Alnfiai
- Department of Information Technology, College of Computers and Information Technology, Taif University, Taif P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Ahmed Sayed
- Research Center, Future University in Egypt, New Cairo 11835, Egypt
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Sivamurugan J, Sureshkumar G. Applying dual models on optimized LSTM with U-net segmentation for breast cancer diagnosis using mammogram images. Artif Intell Med 2023; 143:102626. [PMID: 37673584 DOI: 10.1016/j.artmed.2023.102626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 07/08/2023] [Accepted: 07/09/2023] [Indexed: 09/08/2023]
Abstract
BACKGROUND OF THE STUDY Breast cancer is the most fatal disease that widely affects women. When the cancerous lumps grow from the cells of the breast, it causes breast cancer. Self-analysis and regular medical check-ups help for detecting the disease earlier and enhance the survival rate. Hence, an automated breast cancer detection system in mammograms can assist clinicians in the patient's treatment. In medical techniques, the categorization of breast cancer becomes challenging for investigators and researchers. The advancement in deep learning approaches has established more attention to their advantages to medical imaging issues, especially for breast cancer detection. AIM The research work plans to develop a novel hybrid model for breast cancer diagnosis with the support of optimized deep-learning architecture. METHODS The required images are gathered from the benchmark datasets. These collected datasets are used in three pre-processing approaches like "Median Filtering, Histogram Equalization, and morphological operation", which helps to remove unwanted regions from the images. Then, the pre-processed images are applied to the Optimized U-net-based tumor segmentation phase for obtaining accurate segmented results along with the optimization of certain parameters in U-Net by employing "Adapted-Black Widow Optimization (A-BWO)". Further, the detection is performed in two different ways that is given as model 1 and model 2. In model 1, the segmented tumors are used to extract the significant patterns with the help of the "Gray-Level Co-occurrence Matrix (GLCM) and Local Gradient pattern (LGP)". Further, these extracted patterns are utilized in the "Dual Model accessed Optimized Long Short-Term Memory (DM-OLSTM)" for performing breast cancer detection and the detected score 1 is obtained. In model 2, the same segmented tumors are given into the different variants of CNN, such as "VGG19, Resnet150, and Inception". The extracted deep features from three CNN-based approaches are fused to form a single set of deep features. These fused deep features are inserted into the developed DM-OLSTM for getting the detected score 2 for breast cancer diagnosis. In the final phase of the hybrid model, the score 1 and score 2 obtained from model 1 and model 2 are averaged to get the final detection output. RESULTS The accuracy and F1-score of the offered DM-OLSTM model are achieved at 96 % and 95 %. CONCLUSION Experimental analysis proves that the recommended methodology achieves better performance by analyzing with the benchmark dataset. Hence, the designed model is helpful for detecting breast cancer in real-time applications.
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Affiliation(s)
- J Sivamurugan
- Department of Computer Science and Engineering, School of Engineering & Technology, Pondicherry University (karaikal Campus), karaikal-609605, Puducherry UT, India..
| | - G Sureshkumar
- Department of Computer Science and Engineering, School of Engineering & Technology, Pondicherry University (karaikal Campus), karaikal-609605, Puducherry UT, India
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Robust Classification and Detection of Big Medical Data Using Advanced Parallel K-Means Clustering, YOLOv4, and Logistic Regression. Life (Basel) 2023; 13:life13030691. [PMID: 36983845 PMCID: PMC10056696 DOI: 10.3390/life13030691] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 02/24/2023] [Accepted: 02/28/2023] [Indexed: 03/08/2023] Open
Abstract
Big-medical-data classification and image detection are crucial tasks in the field of healthcare, as they can assist with diagnosis, treatment planning, and disease monitoring. Logistic regression and YOLOv4 are popular algorithms that can be used for these tasks. However, these techniques have limitations and performance issue with big medical data. In this study, we presented a robust approach for big-medical-data classification and image detection using logistic regression and YOLOv4, respectively. To improve the performance of these algorithms, we proposed the use of advanced parallel k-means pre-processing, a clustering technique that identified patterns and structures in the data. Additionally, we leveraged the acceleration capabilities of a neural engine processor to further enhance the speed and efficiency of our approach. We evaluated our approach on several large medical datasets and showed that it could accurately classify large amounts of medical data and detect medical images. Our results demonstrated that the combination of advanced parallel k-means pre-processing, and the neural engine processor resulted in a significant improvement in the performance of logistic regression and YOLOv4, making them more reliable for use in medical applications. This new approach offers a promising solution for medical data classification and image detection and may have significant implications for the field of healthcare.
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