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de Souza HMR, Pereira TTP, de Sá HC, Alves MA, Garrett R, Canuto GAB. Critical Factors in Sample Collection and Preparation for Clinical Metabolomics of Underexplored Biological Specimens. Metabolites 2024; 14:36. [PMID: 38248839 PMCID: PMC10819689 DOI: 10.3390/metabo14010036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 01/02/2024] [Accepted: 01/03/2024] [Indexed: 01/23/2024] Open
Abstract
This review article compiles critical pre-analytical factors for sample collection and extraction of eight uncommon or underexplored biological specimens (human breast milk, ocular fluids, sebum, seminal plasma, sweat, hair, saliva, and cerebrospinal fluid) under the perspective of clinical metabolomics. These samples are interesting for metabolomics studies as they reflect the status of living organisms and can be applied for diagnostic purposes and biomarker discovery. Pre-collection and collection procedures are critical, requiring protocols to be standardized to avoid contamination and bias. Such procedures must consider cleaning the collection area, sample stimulation, diet, and food and drug intake, among other factors that impact the lack of homogeneity of the sample group. Precipitation of proteins and removal of salts and cell debris are the most used sample preparation procedures. This review intends to provide a global view of the practical aspects that most impact results, serving as a starting point for the designing of metabolomic experiments.
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Affiliation(s)
- Hygor M. R. de Souza
- Instituto de Química, Universidade Federal do Rio de Janeiro, LabMeta—LADETEC, Rio de Janeiro 21941-598, Brazil;
| | - Tássia T. P. Pereira
- Departamento de Genética, Ecologia e Evolucao, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, Brazil;
- Departamento de Biodiversidade, Evolução e Meio Ambiente, Universidade Federal de Ouro Preto, Ouro Preto 35400-000, Brazil
| | - Hanna C. de Sá
- Departamento de Química Analítica, Instituto de Química, Universidade Federal da Bahia, Salvador 40170-115, Brazil;
| | - Marina A. Alves
- Instituto de Pesquisa de Produtos Naturais Walter Mors, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-599, Brazil;
| | - Rafael Garrett
- Instituto de Química, Universidade Federal do Rio de Janeiro, LabMeta—LADETEC, Rio de Janeiro 21941-598, Brazil;
- Department of Laboratory Medicine, Boston Children’s Hospital—Harvard Medical School, Boston, MA 02115, USA
| | - Gisele A. B. Canuto
- Departamento de Química Analítica, Instituto de Química, Universidade Federal da Bahia, Salvador 40170-115, Brazil;
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Greenfield E, Alves MDS, Rodrigues F, Nogueira JO, da Silva L, de Jesus HP, Cavalcanti DR, Carvalho BFDC, Almeida JD, Mendes MA, Oliveira Alves MG. Preliminary Findings on the Salivary Metabolome of Hookah and Cigarette Smokers. ACS OMEGA 2023; 8:36845-36855. [PMID: 37841134 PMCID: PMC10569005 DOI: 10.1021/acsomega.3c03683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Accepted: 08/10/2023] [Indexed: 10/17/2023]
Abstract
The aim of the study was to evaluate the salivary metabolomic profile of patients who habitually smoke hookah and cigarettes. The groups consisted of 33 regular and exclusive hookah smokers, 26 regular and exclusive cigarette smokers, and 30 nonsmokers. Unstimulated whole saliva was collected for the measurement of salivary metabolites by gas chromatography coupled with tandem mass spectrometry (GC-MS/MS). The MetaboAnalyst software was used for statistical analysis and evaluation of biomarkers. 11 smoking salivary biomarkers were identified using the area under receiving-operator curver criterion and threshold of 0.9. Xylitol and octadecanol were higher in cigarette smokers compared to controls; arabitol and maltose were higher in controls compared to cigarette smokers; octadecanol and tyramine were higher in hookah smokers compared to controls; phenylalanine was higher in controls compared to hookah smokers; and fructose, isocitric acid, glucuronic acid, tryptamine, maltose, tyramine, and 3-hydroxyisolvaleric acid were higher in hookah smokers compared to cigarettes smokers. Conclusions: The evaluation of the salivary metabolome of hookah smokers, showing separation between the groups, especially between the control versus hookah groups and cigarette versus hookah groups, and it seems to demonstrate that the use of hookah tobacco is more damaging to health.
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Affiliation(s)
- Ellen Greenfield
- Technology
Research Center (NPT), Universidade de Mogi
das Cruzes, Mogi das
Cruzes 08780-911, Brazil
| | - Mariana de Sá Alves
- Department
of Biosciences and Oral Diagnosis, Institute
of Science and Technology, São Paulo State University (UNESP), São José dos Campos, São Paulo 01049-010, Brazil
| | - Fernanda Rodrigues
- Technology
Research Center (NPT), Universidade de Mogi
das Cruzes, Mogi das
Cruzes 08780-911, Brazil
| | | | | | | | | | - Bruna Fernandes do Carmo Carvalho
- Department
of Biosciences and Oral Diagnosis, Institute
of Science and Technology, São Paulo State University (UNESP), São José dos Campos, São Paulo 01049-010, Brazil
| | - Janete Dias Almeida
- Department
of Biosciences and Oral Diagnosis, Institute
of Science and Technology, São Paulo State University (UNESP), São José dos Campos, São Paulo 01049-010, Brazil
| | - Maria Anita Mendes
- Dempster
MS Lab, Department of Chemical Engineering, Polytechnic School, University of Sao Paulo, Sao Paulo 05508-900, Brazil
| | - Mônica Ghislaine Oliveira Alves
- Technology
Research Center (NPT), Universidade de Mogi
das Cruzes, Mogi das
Cruzes 08780-911, Brazil
- Department
of Biosciences and Oral Diagnosis, Institute
of Science and Technology, São Paulo State University (UNESP), São José dos Campos, São Paulo 01049-010, Brazil
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