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Lira RB, Dillingh LS, Schuringa JJ, Yahioglu G, Suhling K, Roos WH. Fluorescence lifetime imaging microscopy of flexible and rigid dyes probes the biophysical properties of synthetic and biological membranes. Biophys J 2024; 123:1592-1609. [PMID: 38702882 PMCID: PMC11214022 DOI: 10.1016/j.bpj.2024.04.033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 03/22/2024] [Accepted: 04/30/2024] [Indexed: 05/06/2024] Open
Abstract
Sensing of the biophysical properties of membranes using molecular reporters has recently regained widespread attention. This was elicited by the development of new probes of exquisite optical properties and increased performance, combined with developments in fluorescence detection. Here, we report on fluorescence lifetime imaging of various rigid and flexible fluorescent dyes to probe the biophysical properties of synthetic and biological membranes at steady state as well as upon the action of external membrane-modifying agents. We tested the solvatochromic dyes Nile red and 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine-N-(7-nitro-2-1,3-benzoxadiazol-4-yl) (ammonium salt) (NBD), the viscosity sensor Bodipy C12, the flipper dye FliptR, as well as the dyes 3,3'-dioctadecyloxacarbocyanine perchlorate (DiO), Bodipy C16, lissamine-rhodamine, and Atto647, which are dyes with no previous reported environmental sensitivity. The performance of the fluorescent probes, many of which are commercially available, was benchmarked with well-known environmental reporters, with Nile red and Bodipy C12 being specific reporters of medium hydration and viscosity, respectively. We show that some widely used ordinary dyes with no previous report of sensing capabilities can exhibit competing performance compared to highly sensitive commercially available or custom-based solvatochromic dyes, molecular rotors, or flipper in a wide range of biophysics experiments. Compared to other methods, fluorescence lifetime imaging is a minimally invasive and nondestructive method with optical resolution. It enables biophysical mapping at steady state or assessment of the changes induced by membrane-active molecules at subcellular level in both synthetic and biological membranes when intensity measurements fail to do so. The results have important consequences for the specific choice of the sensor and take into consideration factors such as probe sensitivity, response to environmental changes, ease and speed of data analysis, and the probe's intracellular distribution, as well as potential side effects induced by labeling and imaging.
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Affiliation(s)
- Rafael B Lira
- Moleculaire Biofysica, Zernike Instituut, Rijksuniversiteit Groningen, Groningen, the Netherlands.
| | - Laura S Dillingh
- Moleculaire Biofysica, Zernike Instituut, Rijksuniversiteit Groningen, Groningen, the Netherlands; Department of Hematology, Universitair Medisch Centrum Groningen & Rijksuniversiteit Groningen, Groningen, the Netherlands
| | - Jan-Jacob Schuringa
- Department of Hematology, Universitair Medisch Centrum Groningen & Rijksuniversiteit Groningen, Groningen, the Netherlands
| | | | - Klaus Suhling
- Department of Physics, King's College London, Strand, London, UK.
| | - Wouter H Roos
- Moleculaire Biofysica, Zernike Instituut, Rijksuniversiteit Groningen, Groningen, the Netherlands
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Wang L, Ma Y, Lin W. A coumarin-based fluorescent probe for highly selective detection of hazardous mercury ions in living organisms. JOURNAL OF HAZARDOUS MATERIALS 2024; 461:132604. [PMID: 37757555 DOI: 10.1016/j.jhazmat.2023.132604] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 09/18/2023] [Accepted: 09/20/2023] [Indexed: 09/29/2023]
Abstract
In recent years, heavy metal mercury (II) pollutants have caused serious harm to human health and ecosystems. It has become critical to develop simple and highly selective sensing solutions for monitoring mercury (II). In this work, we designed and developed a novel fluorescent probe Coa-SH using the Hg2+-induced chemical reaction as a sensing mechanism. The probe Coa-SH showed high selectivity for the detection of Hg2+ by desulfurization reactions in solution. The test strips prepared with this probe could be applied to detect mercury ions in aqueous solutions. In addition, the probe Coa-SH provided a tool to detect Hg2+ in living systems. In living cells and zebrafish, the probe turned on bright red fluorescent signals in the presence of mercury ions. Importantly, the probe Coa-SH enabled Hg2+ detection in plant onion roots. This work provides an effective method for monitoring mercury ions in the environment and in living organisms.
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Affiliation(s)
- Lin Wang
- School of Chemistry and Chemical Engineering, University of Jinan, Jinan, Shandong 250022, PR China
| | - Yanyan Ma
- Shandong Provincial Key Laboratory of Marine Monitoring Instrument Equipment Technology, National Engineering and Technological Research Center of Marine Monitoring Equipment, Institute of Oceanographic Instrumentation, Qilu University of Technology (Shandong Academy of Sciences), Qingdao, Shandong 266061, PR China
| | - Weiying Lin
- School of Chemistry and Chemical Engineering, University of Jinan, Jinan, Shandong 250022, PR China; Institute of Optical Materials and Chemical Biology, Guangxi Key Laboratory of Electrochemical Energy Materials, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, PR China.
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3
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Jena AB, Samal RR, Bhol NK, Duttaroy AK. Cellular Red-Ox system in health and disease: The latest update. Biomed Pharmacother 2023; 162:114606. [PMID: 36989716 DOI: 10.1016/j.biopha.2023.114606] [Citation(s) in RCA: 80] [Impact Index Per Article: 80.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 03/13/2023] [Accepted: 03/23/2023] [Indexed: 03/29/2023] Open
Abstract
Cells are continually exposed to reactive oxygen species (ROS) generated during cellular metabolism. Apoptosis, necrosis, and autophagy are biological processes involving a feedback cycle that causes ROS molecules to induce oxidative stress. To adapt to ROS exposure, living cells develop various defense mechanisms to neutralize and use ROS as a signaling molecule. The cellular redox networks combine signaling pathways that regulate cell metabolism, energy, cell survival, and cell death. Superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidase (GPX) are essential antioxidant enzymes that are required for scavenging ROS in various cell compartments and response to stressful situations. Among the non-enzymatic defenses, vitamin C, glutathione (GSH), polyphenols, carotenoids, vitamin E, etc., are also essential. This review article describes how ROS are produced as byproducts of oxidation/reduction (redox) processes and how the antioxidants defense system is directly or indirectly engaged in scavenging ROS. In addition, we used computational methods to determine the comparative profile of binding energies of several antioxidants with antioxidant enzymes. The computational analysis demonstrates that antioxidants with a high affinity for antioxidant enzymes regulate their structures.
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Affiliation(s)
- Atala Bihari Jena
- Department of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Rashmi Rekha Samal
- CSIR-Institute of Minerals & Materials Technology, Bhubaneswar 751 013, India
| | - Nitish Kumar Bhol
- Post Graduate Department of Biotechnology, Utkal University, Bhubaneswar 751004, Odisha, India
| | - Asim K Duttaroy
- Department of Nutrition, Institute of Basic Medical Sciences, Faculty of Medicine, University of Oslo, 0317 Oslo, Norway.
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Melavanki R, Kusanur R, Sharma K, Sadasivuni KK, Koppal VV, Patil NR. Exploration of spectroscopic, computational, fluorescence turn-off mechanism, molecular docking and in silico studies of pyridine derivative. Photochem Photobiol Sci 2023:10.1007/s43630-023-00427-z. [PMID: 37184774 DOI: 10.1007/s43630-023-00427-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Accepted: 04/20/2023] [Indexed: 05/16/2023]
Abstract
The present work reports pyridine-based chalones using spectroscopic techniques to use pyridine derivative analysis. The solvatochromic behavior of 3DPP in non-polar, polar protic and aprotic solvents has been investigated experimentally. The photophysical property of the compound in diverse solvents is attributed to the intra-molecular charge transfer interactions. The dipole moment of 3DPP is estimated theoretically and experimentally using various solvatochromic methods. It is observed that there is a bathochromic shift in the emission spectra of 3DPP, which confirms the π → π* transition. Fluorescence quenching of 3DPP is studied. The type of fluorescence quenching mechanism is found to be collisional quenching. A study of FRET theory on 3DPP was carried out with metal ions. There is a considerable energy transfer between 3DPP and metal ions. NLO behaviors of the compound have been revealed with the help of Kurtz-Perry powder technique. Additionally, the title molecule is docked, carried ADMET studies and drug-like activity using in silico tools. It is probed for antifungal activity through bioinformatics kit which showed potential information.
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Affiliation(s)
- Raveendra Melavanki
- Department of Physics, M. S. Ramaiah Institute of Technology, Bangalore, Karnataka, 560054, India.
- Autonomous, Affiliated to Visvesvaraya Technological University, Belagavi, Karnataka, 590018, India.
| | - Raviraj Kusanur
- Department of Chemistry, R.V. College of Engineering, Bangalore, Karnataka, India
| | - Kalpana Sharma
- Department of Physics, M. S. Ramaiah Institute of Technology, Bangalore, Karnataka, 560054, India
- Autonomous, Affiliated to Visvesvaraya Technological University, Belagavi, Karnataka, 590018, India
| | | | - V V Koppal
- Department of Physics, KLE Technological University, Hubli, Karnataka, 580031, India
| | - N R Patil
- Department of Physics, B V B College of Engineering and Technology, Hubli, Karnataka, 580031, India.
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Ion-specific bathochromic shifts: Simultaneous detection of multiple heavy metal pollutants via charge transfer interactions. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Kumar GD, Banasiewicz M, Wrzosek A, O'Mari O, Zochowska M, Vullev VI, Jacquemin D, Szewczyk A, Gryko DT. A sensitive zinc probe operating via enhancement of excited-state intramolecular charge transfer. Org Biomol Chem 2022; 20:7439-7447. [PMID: 36102673 DOI: 10.1039/d2ob01296k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Novel highly sensitive fluorescent probes for zinc cations based on the diketopyrrolopyrrole scaffold were designed and synthesized. Large bathochromic shifts (≈80 nm) of fluorescence are observed when the Zn2+-recognition unit (di-(2-picolyl)amine) is bridged with the fluorophore possessing an additional pyridine unit able to participate in the coordination process. This effect originates from the dipolar architecture and the increasing electron-withdrawing properties of the diketopyrrolopyrrole core upon addition of the cation. The new, greenish-yellow emitting probes, which operate via modulation of intramolecular charge transfer, are very sensitive to the presence of Zn2+. Introduction of a morpholine unit in the diketopyrrolopyrrole structure induces a selective six-fold increase of the emission intensity upon zinc coordination. Importantly, the presence of other divalent biologically relevant metal cations has negligible effects and typically even at a 100-fold higher concentration of Mg2+/Zn2+, the effect is comparable. Computational studies rationalize the strong bathochromic shift upon Zn2+-complexation. Decorating the probes with the triphenylphosphonium cation and morpholine unit enables selective localization in the mitochondria and the lysosome of cardiac H9C2 cells, respectively.
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Affiliation(s)
- G Dinesh Kumar
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Marzena Banasiewicz
- Institute of Physics, Polish Academy of Sciences, Al. Lotników 32/46, 02-668 Warsaw, Poland
| | - Antoni Wrzosek
- Nencki Institute of Experimental Biology, Polish Academy of Sciences, Pasteur 3, 02-093 Warsaw, Poland.
| | - Omar O'Mari
- Department of Bioengineering, University of California, Riverside, 900 University Ave., Riverside, CA 92521, USA.
| | - Monika Zochowska
- Nencki Institute of Experimental Biology, Polish Academy of Sciences, Pasteur 3, 02-093 Warsaw, Poland.
| | - Valentine I Vullev
- Department of Bioengineering, University of California, Riverside, 900 University Ave., Riverside, CA 92521, USA.
| | - Denis Jacquemin
- Nantes University, CNRS, CEISAM, UMR-6230, F-4400 Nantes, France.
| | - Adam Szewczyk
- Nencki Institute of Experimental Biology, Polish Academy of Sciences, Pasteur 3, 02-093 Warsaw, Poland.
| | - Daniel T Gryko
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
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Bej S, Nandi M, Ghosh P. Development of fluorophoric [2]pseudorotaxanes and [2]rotaxane: selective sensing of Zn(II). Org Biomol Chem 2022; 20:7284-7293. [PMID: 36052954 DOI: 10.1039/d2ob01210c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Fluorophoric [2]pseudorotaxanes {NiPR1(ClO4)2-NiPR3(ClO4)2} are synthesized by utilizing newly designed fluorophoric bidentate ligands (L1-L3) and a heteroditopic naphthalene containing macrocycle (NaphMC) with high yields via Ni(II) templation and π-π stacking interactions. Subsequently, a fluorophoric [2]rotaxane (NAPRTX) is established through a Cu(I) catalysed click reaction between an azide terminated pseudorotaxane, {NiPR4(ClO4)2}, which contains the newly designed fluorophoric ligand L4, and alkyne terminated bulky stopper units. All these fluorophoric [2]pseudorotaxanes and the [2]rotaxane were characterized using numerous techniques such as mass spectrometry, NMR, UV/Vis, PL, and elemental analysis, wherever applicable. Furthermore, to investigate the effect of the fluorophoric moieties, the coordinating ability of chelating units, and size and shape of the three dimensional cavity generated by the mechanical bond in the interlocked [2]rotaxane (NAPRTX), we have performed a sensing study of various metal ions. Thus, the interlocked [2]rotaxane is found to have potential as a selective fluorescent sensor for Zn(II) metal ions over other transition, alkali and alkaline earth metal ions, where the 2,2'-bipyridyl arylvinylene moiety of the axle acts as a fluorescence signalling unit.
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Affiliation(s)
- Somnath Bej
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700032, India.
| | - Mandira Nandi
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700032, India.
| | - Pradyut Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700032, India.
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Hadi H, Shamlouei HR. Molecular simulation of a fluorescent sensor of 2-(1- H-benzoimidazole)- N-phenylcarbotiamide for selective detection of Ni 2+ in aqueous media. MOLECULAR SIMULATION 2022. [DOI: 10.1080/08927022.2022.2114600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Affiliation(s)
- Hamid Hadi
- Department of Chemistry (Physical Chemistry Group), Faculty of Science, University of Lorestan, Khorramabad, Iran
- Department of Chemistry (Physical Chemistry Group), Faculty of Science, University of Qom, Qom, Iran
| | - Hamid Reza Shamlouei
- Department of Chemistry (Physical Chemistry Group), Faculty of Science, University of Lorestan, Khorramabad, Iran
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Sharma H, Tamrakar A, Maddeshiya T, Shakya PR, Tiwari KK, Pandey MD, Pandey R. A Zinc (II) Complex Comprising Aminoethyl-Nitropyridine Derived N,N,O-Donor Schiff Base Ligand Serves as an Efficient ON-OFF Probe for Cu (II). LUMINESCENCE 2022. [PMID: 35777923 DOI: 10.1002/bio.4318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 05/27/2022] [Accepted: 06/27/2022] [Indexed: 11/12/2022]
Abstract
A new fluorescent zinc (II) complex based probe 1 encompassing a Schiff base (E)-2-methoxy-6-((2-(5-nitropyridin-2-ylamino)ethylimino)methyl)phenol (HL) has been designed, synthesized and used for the highly selective detection of Cu2+ . Ligand HL and complex 1 have been characterized by various spectroscopic techniques such as 1 H, 13 C-NMR, FT-IR, HR-MS, UV/vis and fluorescence studies. Ligand HL did not exhibit any considerable change in fluorescence in presence of various cations. Notably, its Zn (II)-complex 1 exhibited highly selective 'Turn-OFF' fluorescence signalling toward Cu2+ which remains uninterrupted with competing analytes. Probe 1 interacts with Cu2+ in 1:2 (1: Cu2+ ) stoichiometry as estimated through Job's plot. Moreover, selectivity of 1 was further confirmed through interaction of 1+ Cu2+ complex with some possible interfering metal ions inducing insignificant response. Additionally, association and quenching constant have been determined to be 3.30 × 104 M-1 and 0.21× 105 M-1 through Benesi-Hildebrand method and Stern-Volmer plot, respectively.
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Affiliation(s)
- Himani Sharma
- Department of Chemistry, National Institute of Technology Uttarakhand, Srinagar, Uttarakhand, India
| | - Arpana Tamrakar
- Department of Chemistry, Institute of Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
| | - Tarkeshwar Maddeshiya
- Department of Chemistry, Institute of Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
| | - Pawan Raj Shakya
- Department of Chemistry, Tribhuvan University, Padmakanya Multiple Campus, Kathmandu, Nepal
| | - Kamal Kant Tiwari
- Department of Chemistry, National Institute of Technology Uttarakhand, Srinagar, Uttarakhand, India
| | - Mrituanjay D Pandey
- Department of Chemistry, Institute of Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
| | - Rampal Pandey
- Department of Chemistry, National Institute of Technology Uttarakhand, Srinagar, Uttarakhand, India
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Ma W, Yan B. Monosystem Discriminative Sensor toward Inorganic Anions via Incorporating Three Different Luminescent Channels in Metal-Organic Frameworks. Anal Chem 2022; 94:5866-5874. [PMID: 35384662 DOI: 10.1021/acs.analchem.2c00019] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Because there are great demands of distinguishing multiple chemically similar analytes, chemical sensors for multivariate analyses have been developed rapidly in the past few decades. However, designing luminescent discriminative sensors based on a monosystem has been a challenge until now. In this work, we first develop a triemitting luminescent discriminative platform named RGB@TLU-2 with three different emission centers: blue-emitting center (BDC-NH2), green-emitting (Tb@BDC-SO3-), and red-emitting center (rhodamine B, RhB). The different luminescent mechanisms (ligand emission, LMET emission, guest emission) in these emission centers endow RGB@TLU-2 with high cross-reactivity, which is essential for discriminating applications. To balance the three luminescent centers, all variables in the synthesis process are optimized carefully. Surprisingly, the RGB@TLU-2 shows a variety of luminescent response patterns when immersed into 12 inorganic anions. Two unsupervised multidimensional analysis methods, (principal component analysis and hierarchical cluster analysis), are used to explore the relationship between these anions. On the basis of the luminescent response of analytes, 5 response modes are obtained and 12 inorganic anions are classified into 6 groups. The sensing mechanisms are discussed in detail. Detection limits of typical anions Cr2O72-, PO43-, ClO-, and NO2- are calculated as 2.895 × 10-8, 6.353 × 10-6, 1.134 × 10-5, and 4.56 × 10-4 mol/L, respectively. Furthermore, the RGB@TLU-2 also shows the ability to distinguish 4 (Fe3+, Fe2+, Cu2+ and Cr3+) of 12 metal ions and 3 (Trp, Pro, and Arg) of 11 amino acids.
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Affiliation(s)
- Wanpeng Ma
- School of Chemical Science and Engineering, Tongji University, Siping Road 1239, Shanghai 200092, China
| | - Bing Yan
- School of Chemical Science and Engineering, Tongji University, Siping Road 1239, Shanghai 200092, China
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