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For: Wu B, White KA. Uncoupling RNA virus replication from transcription via the polymerase: functional and evolutionary insights. EMBO J 2007;26:5120-30. [PMID: 18034156 DOI: 10.1038/sj.emboj.7601931] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2007] [Accepted: 10/29/2007] [Indexed: 01/11/2023]  Open
Number Cited by Other Article(s)
1
Chkuaseli T, White K. Dimerization of an umbravirus RNA genome activates subgenomic mRNA transcription. Nucleic Acids Res 2023;51:8787-8804. [PMID: 37395397 PMCID: PMC10484742 DOI: 10.1093/nar/gkad550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 05/31/2023] [Accepted: 06/16/2023] [Indexed: 07/04/2023]  Open
2
Lakhal-Naouar I, Hack HR, Moradel E, Jarra A, Grove HL, Ismael RM, Padilla S, Coleman D, Ouellette J, Darden J, Storme C, Peachman KK, Hall TL, Huhtanen ME, Scott PT, Hakre S, Jagodzinski LL, Peel SA. Analytical validation of quantitative SARS-CoV-2 subgenomic and viral load laboratory developed tests conducted on the Panther Fusion® (Hologic) with preliminary application to clinical samples. PLoS One 2023;18:e0287576. [PMID: 37384714 PMCID: PMC10309597 DOI: 10.1371/journal.pone.0287576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 06/07/2023] [Indexed: 07/01/2023]  Open
3
Davies M, Bramwell LR, Jeffery N, Bunce B, Lee BP, Knight B, Auckland C, Masoli JA, Harries LW. Persistence of clinically-relevant levels of SARS-CoV2 envelope gene subgenomic RNAs in non-immunocompromised individuals. Int J Infect Dis 2021;116:418-425. [PMID: 34890790 PMCID: PMC8757659 DOI: 10.1016/j.ijid.2021.12.312] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 11/29/2021] [Accepted: 12/02/2021] [Indexed: 11/19/2022]  Open
4
Chkuaseli T, White KA. Activation of viral transcription by stepwise largescale folding of an RNA virus genome. Nucleic Acids Res 2020;48:9285-9300. [PMID: 32785642 PMCID: PMC7498350 DOI: 10.1093/nar/gkaa675] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 07/08/2020] [Accepted: 07/31/2020] [Indexed: 12/31/2022]  Open
5
Sun R, Zhang S, Zheng L, Qu F. Translation-Independent Roles of RNA Secondary Structures within the Replication Protein Coding Region of Turnip Crinkle Virus. Viruses 2020;12:v12030350. [PMID: 32235750 PMCID: PMC7150753 DOI: 10.3390/v12030350] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Revised: 03/12/2020] [Accepted: 03/20/2020] [Indexed: 01/20/2023]  Open
6
Zhang S, Sun R, Guo Q, Zhang XF, Qu F. Repression of turnip crinkle virus replication by its replication protein p88. Virology 2019;526:165-172. [DOI: 10.1016/j.virol.2018.10.024] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Revised: 10/22/2018] [Accepted: 10/27/2018] [Indexed: 12/18/2022]
7
Gunawardene CD, Donaldson LW, White KA. Tombusvirus polymerase: Structure and function. Virus Res 2017;234:74-86. [PMID: 28111194 DOI: 10.1016/j.virusres.2017.01.012] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Revised: 12/30/2016] [Accepted: 01/13/2017] [Indexed: 12/25/2022]
8
Blanco-Pérez M, Hernández C. Evidence supporting a premature termination mechanism for subgenomic RNA transcription in Pelargonium line pattern virus: identification of a critical long-range RNA-RNA interaction and functional variants through mutagenesis. J Gen Virol 2016;97:1469-1480. [PMID: 26990209 DOI: 10.1099/jgv.0.000459] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
9
Conserved motifs in a tombusvirus polymerase modulate genome replication, subgenomic transcription, and amplification of defective interfering RNAs. J Virol 2015;89:3236-46. [PMID: 25568204 DOI: 10.1128/jvi.03378-14] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
10
p33-Independent activation of a truncated p92 RNA-dependent RNA polymerase of Tomato bushy stunt virus in yeast cell-free extract. J Virol 2012;86:12025-38. [PMID: 22933278 DOI: 10.1128/jvi.01303-12] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
11
Krupovic M, Cvirkaite-Krupovic V. Towards a more comprehensive classification of satellite viruses. Nat Rev Microbiol 2012. [DOI: 10.1038/nrmicro2676-c4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
12
Jiwan SD, Wu B, White KA. Subgenomic mRNA transcription in tobacco necrosis virus. Virology 2011;418:1-11. [PMID: 21803392 DOI: 10.1016/j.virol.2011.07.005] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2011] [Revised: 06/27/2011] [Accepted: 07/07/2011] [Indexed: 12/14/2022]
13
Sztuba-Solińska J, Stollar V, Bujarski JJ. Subgenomic messenger RNAs: mastering regulation of (+)-strand RNA virus life cycle. Virology 2011;412:245-55. [PMID: 21377709 PMCID: PMC7111999 DOI: 10.1016/j.virol.2011.02.007] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2010] [Revised: 12/14/2010] [Accepted: 02/04/2011] [Indexed: 12/12/2022]
14
[Viral noncoding RNAs]. Uirusu 2010;59:179-87. [PMID: 20218326 DOI: 10.2222/jsv.59.179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
15
Nedialkova DD, Gorbalenya AE, Snijder EJ. Arterivirus Nsp1 modulates the accumulation of minus-strand templates to control the relative abundance of viral mRNAs. PLoS Pathog 2010;6:e1000772. [PMID: 20174607 PMCID: PMC2824749 DOI: 10.1371/journal.ppat.1000772] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2009] [Accepted: 01/14/2010] [Indexed: 12/18/2022]  Open
16
RNA-based regulation of transcription and translation of aureusvirus subgenomic mRNA1. J Virol 2009;83:10096-105. [PMID: 19605481 DOI: 10.1128/jvi.00376-09] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
17
Huang YW, Hu CC, Lin CA, Liu YP, Tsai CH, Lin NS, Hsu YH. Structural and functional analyses of the 3' untranslated region of Bamboo mosaic virus satellite RNA. Virology 2009;386:139-53. [PMID: 19201437 DOI: 10.1016/j.virol.2009.01.019] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2008] [Revised: 11/16/2008] [Accepted: 01/10/2009] [Indexed: 12/29/2022]
18
Wu B, Pogany J, Na H, Nicholson BL, Nagy PD, White KA. A discontinuous RNA platform mediates RNA virus replication: building an integrated model for RNA-based regulation of viral processes. PLoS Pathog 2009;5:e1000323. [PMID: 19266082 PMCID: PMC2648310 DOI: 10.1371/journal.ppat.1000323] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2008] [Accepted: 02/03/2009] [Indexed: 01/01/2023]  Open
19
Higher-order RNA structural requirements and small-molecule induction of tombusvirus subgenomic mRNA transcription. J Virol 2008;82:3864-71. [PMID: 18256151 DOI: 10.1128/jvi.02416-07] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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