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Raspopova AA, Lebedev VS, Searle JB, Bannikova AA. Discordant phylogenies in the
Sorex araneus
group (Soricidae, Mammalia): Footprints of past reticulations? ZOOL SCR 2023. [DOI: 10.1111/zsc.12590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Affiliation(s)
| | | | - Jeremy B. Searle
- Department of Ecology and Evolutionary Biology Cornell University Ithaca New York USA
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Shchipanov NA, Artamonov AV, Titov SV, Pavlova SV. Spatial Population Genetic Structuring of the Common Shrew Sorex araneus (Lipotyphla, Mammalia): Variability of Microsatellite Markers. RUSS J GENET+ 2020. [DOI: 10.1134/s102279542008013x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Raspopova AA, Bannikova AA, Sheftel BI, Kryštufek B, Kouptsov AV, Illarionova NA, Pavlova SV, Lebedev VS. A never-ending story of the common shrew: searching for the origin. MAMMAL RES 2020. [DOI: 10.1007/s13364-020-00498-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Shchipanov NA, Pavlova SV. Role of Population Structuring in the Formation of Karyotypic Diversity of the Common Shrew Sorex araneus (Lipotyphla, Mammalia). RUSS J ECOL+ 2019. [DOI: 10.1134/s1067413619020097] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Raspopova AA, Bannikova AA, Lebedev VS. The Phylogeography and Demographic History of the Common Shrew Sorex araneus L., 1758 (Eulipotyphla, Mammalia). RUSS J GENET+ 2018. [DOI: 10.1134/s102279541812013x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Density-dependent processes determine the distribution of chromosomal races of the common shrew Sorex araneus (Lipotyphla, Mammalia). MAMMAL RES 2017. [DOI: 10.1007/s13364-017-0314-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Shchipanov NA, Pavlova SV. Evolutionary and taxonomic differentiation of shrew species in the “araneus” group of the genus Sorex: 2. Subdivision within the common shrew. BIOL BULL+ 2017. [DOI: 10.1134/s1062359016090168] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Grigoryeva OO, Borisov YM, Stakheev VV, Balakirev AE, Krivonogov DM, Orlov VN. Genetic structure of the common shrew Sorex araneus L. 1758 (Mammalia, Lipotyphla) in continuous and fragmented areas. RUSS J GENET+ 2015. [DOI: 10.1134/s1022795415030047] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Intra-species structuring in the common shrew Sorex araneus (Lipotyphla: Soricidae) in European Russia: morphometric variability could give evidence of limitation of interpopulation migration. RUSSIAN JOURNAL OF THERIOLOGY 2014. [DOI: 10.15298/rusjtheriol.13.2.08] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Polly PD, Polyakov AV, Ilyashenko VB, Onischenko SS, White TA, Shchipanov NA, Bulatova NS, Pavlova SV, Borodin PM, Searle JB. Phenotypic variation across chromosomal hybrid zones of the common shrew (Sorex araneus) indicates reduced gene flow. PLoS One 2013; 8:e67455. [PMID: 23874420 PMCID: PMC3707902 DOI: 10.1371/journal.pone.0067455] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2013] [Accepted: 05/18/2013] [Indexed: 12/02/2022] Open
Abstract
Sorex araneus, the Common shrew, is a species with more than 70 karyotypic races, many of which form parapatric hybrid zones, making it a model for studying chromosomal speciation. Hybrids between races have reduced fitness, but microsatellite markers have demonstrated considerable gene flow between them, calling into question whether the chromosomal barriers actually do contribute to genetic divergence. We studied phenotypic clines across two hybrid zones with especially complex heterozygotes. Hybrids between the Novosibirsk and Tomsk races produce chains of nine and three chromosomes at meiosis, and hybrids between the Moscow and Seliger races produce chains of eleven. Our goal was to determine whether phenotypes show evidence of reduced gene flow at hybrid zones. We used maximum likelihood to fit tanh cline models to geometric shape data and found that phenotypic clines in skulls and mandibles across these zones had similar centers and widths as chromosomal clines. The amount of phenotypic differentiation across the zones is greater than expected if it were dissipating due to unrestricted gene flow given the amount of time since contact, but it is less than expected to have accumulated from drift during allopatric separation in glacial refugia. Only if heritability is very low, Ne very high, and the time spent in allopatry very short, will the differences we observe be large enough to match the expectation of drift. Our results therefore suggest that phenotypic differentiation has been lost through gene flow since post-glacial secondary contact, but not as quickly as would be expected if there was free gene flow across the hybrid zones. The chromosomal tension zones are confirmed to be partial barriers that prevent differentiated races from becoming phenotypically homogenous.
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Affiliation(s)
- P. David Polly
- Departments of Geological Sciences and Biology, Indiana University, Bloomington, Indiana, United States of America
| | - Andrei V. Polyakov
- Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia
| | - Vadim B. Ilyashenko
- Kemerovo State University, Department of Zoology and Ecology, Kemerovo, Russia
| | | | - Thomas A. White
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York, United States of America
- Computational and Molecular Population Genetics (CMPG) Lab, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Nikolay A. Shchipanov
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia
| | - Nina S. Bulatova
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia
| | - Svetlana V. Pavlova
- A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia
| | - Pavel M. Borodin
- Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia
| | - Jeremy B. Searle
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York, United States of America
- Department of Biology, University of York, York, United Kingdom
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Orlov VN, Balakirev AE, Borisov YM. Phylogenetic relationships of caucasian shrew Sorex satunini Ogn. (Mammalia) in the superspecies Sorex araneus inferred from the data of karyological analysis and the mtDNA cyt b gene sequencing. RUSS J GENET+ 2011. [DOI: 10.1134/s1022795411060159] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Raspopova AA, Shchipanov NA. Variability of a cytochrome b region in different chromosome races and populations of the common shrew Sorex araneus L., 1758. RUSS J GENET+ 2011. [DOI: 10.1134/s1022795411030148] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Fennoscandian phylogeography of the common shrew Sorex araneus. Postglacial recolonisation—combining information from chromosomal variation with mitochondrial DNA data. ACTA ACUST UNITED AC 2011. [DOI: 10.1007/s13364-010-0022-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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BANNIKOVA ANNAA, DOKUCHAEV NIKOLAIE, YUDINA EUGENIAV, BOBRETZOV ANATOLYV, SHEFTEL BORISI, LEBEDEV VLADIMIRS. Holarctic phylogeography of the tundra shrew (Sorex tundrensis) based on mitochondrial genes. Biol J Linn Soc Lond 2010. [DOI: 10.1111/j.1095-8312.2010.01510.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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WHITE THOMASA, SEARLE JEREMYB. The colonization of Scottish islands by the common shrew, Sorex araneus (Eulipotyphla: Soricidae). Biol J Linn Soc Lond 2008. [DOI: 10.1111/j.1095-8312.2008.01019.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Orlov VN, Kozlovskii AI, Balakirev AE, Borisov YM. Fixation of metacentric chromosomes in eastern Europe populations of the common shrew Sorex araneus L. RUSS J GENET+ 2008. [DOI: 10.1134/s1022795408050013] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Basset P, Yannic G, Hausser J. Chromosomal rearrangements and genetic structure at different evolutionary levels of the Sorex araneus group. J Evol Biol 2008; 21:842-52. [PMID: 18266682 DOI: 10.1111/j.1420-9101.2008.01506.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Robertsonian (Rb) fusions received large theoretical support for their role in speciation, but empirical evidence is often lacking. Here, we address the role of Rb rearrangements on the genetic differentiation of the karyotypically diversified group of shrews, Sorex araneus. We compared genetic structure between 'rearranged' and 'common' chromosomes in pairwise comparisons of five karyotypic taxa of the group. Considering all possible comparisons, we found a significantly greater differentiation at rearranged chromosomes, supporting the role of chromosomal rearrangements in the general genetic diversification of this group. Intertaxa structure and distance were larger across rearranged chromosomes for most of the comparisons, although these differences were not significant. This last result could be explained by the large variance observed among microsatellite-based estimates. The differences observed among the pairs of taxa analysed support the role of both the hybrid karyotypic complexity and the level of evolutionary divergence.
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Affiliation(s)
- P Basset
- Department of Ecology and Evolution, Biology Building, University of Lausanne, Lausanne, Switzerland.
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DNA polymorphism within Sorex araneus from European Russia as inferred from mtDNA cytochrome b sequences. RUSSIAN JOURNAL OF THERIOLOGY 2007. [DOI: 10.15298/rusjtheriol.06.1.07] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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RAPDs in representatives of the genus Sorex, including chromosome races of Sorex araneus. RUSSIAN JOURNAL OF THERIOLOGY 2007. [DOI: 10.15298/rusjtheriol.06.1.06] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Phylogeographic differentiation in Sorex araneus: morphology in relation to geography and karyotype. RUSSIAN JOURNAL OF THERIOLOGY 2007. [DOI: 10.15298/rusjtheriol.06.1.11] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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JADWISZCZAK KATARZYNAA, RATKIEWICZ MIROSŁAW, BANASZEK AGATA. Analysis of molecular differentiation in a hybrid zone between chromosomally distinct races of the common shrewSorex araneus(Insectivora: Soricidae) suggests their common ancestry. Biol J Linn Soc Lond 2006. [DOI: 10.1111/j.1095-8312.2006.00659.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Castiglia R, Bekele A, Makundi R, Oguge N, Corti M. Chromosomal diversity in the genus Arvicanthis (Rodentia, Muridae) from East Africa: a taxonomic and phylogenetic evaluation. J ZOOL SYST EVOL RES 2006. [DOI: 10.1111/j.1439-0469.2006.00356.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Bannikova AA, Bulatova NS, Kramerov DA. Molecular variability in the common shrew Sorex araneus L. from european russia and siberia inferred from the length polymorphism of DNA regions flanked by short interspersed elements (inter-SINE PCR) and the relationships between the moscow and seliger chromosome races. RUSS J GENET+ 2006. [DOI: 10.1134/s1022795406060020] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Basset P, Yannic G, Hausser J. Genetic and karyotypic structure in the shrews of the Sorex araneus group: are they independent? Mol Ecol 2006; 15:1577-87. [PMID: 16629812 DOI: 10.1111/j.1365-294x.2006.02891.x] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The species of the common shrew (Sorex araneus) group are morphologically very similar but exhibit high levels of karyotypic variation. Here we used genetic variation at 10 microsatellite markers in a data set of 212 individuals mostly sampled in the western Alps and composed of five karyotypic taxa (Sorex coronatus, Sorex antinorii and the S. araneus chromosome races Cordon, Bretolet and Vaud) to investigate the concordance between genetic and karyotypic structure. Bayesian analysis confirmed the taxonomic status of the three sampled species since individuals consistently grouped according to their taxonomical status. However, introgression can still be detected between S. antinorii and the race Cordon of S. araneus. This observation is consistent with the expected low karyotypic complexity of hybrids between these two taxa. Geographically based cryptic substructure was discovered within S. antinorii, a pattern consistent with the different postglaciation recolonization routes of this species. Additionally, we detected two genetic groups within S. araneus notwithstanding the presence of three chromosome races. This pattern can be explained by the probable hybrid status of the Bretolet race but also suggests a relatively low impact of chromosomal differences on genetic structure compared to historical factors. Finally, we propose that the current data set (available at http://www.unil.ch/dee/page7010_en.html#1) could be used as a reference by those wanting to identify Sorex individuals sampled in the western Alps.
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Affiliation(s)
- P Basset
- Department of Ecology and Evolution, University of Lausanne, Switzerland.
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Andersson AC, Alström-Rapaport C, Fredga K. Lack of mitochondrial DNA divergence between chromosome races of the common shrew, Sorex araneus, in Sweden. Implications for interpreting chromosomal evolution and colonization history. Mol Ecol 2005; 14:2703-16. [PMID: 16029472 DOI: 10.1111/j.1365-294x.2005.02584.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The common shrew, Sorex araneus, has one of the most variable karyotypes among mammals, displaying numerous chromosome races throughout its distribution. The six chromosome races present in Sweden can be categorized in two different karyotypic groups, the west and north European karyotypic groups (western and northern). Three races belonging to the western group are considered to have arisen through whole arm reciprocal translocations (WARTs). Race formation through this process requires a bottleneck event. In the present study we sequenced a part of the mitochondrial DNA (mtDNA) genome to investigate molecular differences between the chromosome races in Sweden. We found no mtDNA differentiation between the mainland chromosome races or the karyotypic groups. Genetic variation is as large between populations within a race as between populations among the races or karyotypic groups, suggesting that the karyotypic groups might have originated in a common glacial refugium. The noticeable exception is the Oland race, which shows higher mtDNA diversity compared to the other Swedish races, indicating a divergent origin difficult to explain. Mitochondrial DNA variation in Sweden suggests that most haplotypes arose in situ and that the populations has undergone a rapid size expansion. Altogether, the mtDNA data are in agreement with the WART hypothesis, which still holds as the most plausible variant of karyotype evolution for three of the chromosome races of the common shrew in Sweden.
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Affiliation(s)
- Anna-Carin Andersson
- Evolutionary Functional Genomics, Department of Evolution, Genomics and Systematics, EBC, Uppsala University, Norbyvägen 18 D, SE-752 36 Uppsala, Sweden.
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CASTIGLIA RICCARDO, ANNESI FLAVIA, CAPANNA ERNESTO. Geographical pattern of genetic variation in the Robertsonian system of Mus musculus domesticus in central Italy. Biol J Linn Soc Lond 2005. [DOI: 10.1111/j.1095-8312.2005.00442.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Willett CS, Burton RS. Evolution of Interacting Proteins in the Mitochondrial Electron Transport System in a Marine Copepod. Mol Biol Evol 2004; 21:443-53. [PMID: 14660687 DOI: 10.1093/molbev/msh031] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The extensive interaction between mitochondrial-encoded and nuclear-encoded subunits of electron transport system (ETS) enzymes in mitochondria is expected to lead to intergenomic coadaptation. Whether this coadaptation results from adaptation to the environment or from fixation of deleterious mtDNA mutations followed by compensatory nuclear gene evolution is unknown. The intertidal copepod Tigriopus californicus shows extreme divergence in mtDNA sequence and provides an excellent model system for study of intergenomic coadaptation. Here, we examine genes encoding subunits of complex III of the ETS, including the mtDNA-encoded cytochrome b (CYTB), the nuclear-encoded rieske iron-sulfur protein (RISP), and cytochrome c(1) (CYC1). We compare levels of polymorphism within populations and divergence between populations in these genes to begin to untangle the selective forces that have shaped evolution in these genes. CYTB displays dramatic divergence between populations, but sequence analysis shows no evidence for positive selection driving this divergence. CYC1 and RISP have lower levels of sequence divergence between populations than CYTB, but, again, sequence analysis gives no evidence for positive selection acting on them. However, an examination of variation at cytochrome c (CYC), a nuclear-encoded protein that transfers electrons between complex III and complex IV provides evidence for selective divergence. Hence, it appears that rapid evolution in mitochondrial-encoded subunits is not always associated with rapid divergence in interacting subunits (CYC1 and RISP), but can be in some cases (CYC). Finally, a comparison of nuclear-encoded and mitochondrial-encoded genes from T. californicus suggests that substitution rates in the mitochondrial-encoded genes are dramatically increased relative to nuclear genes.
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