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Barbosa AS. Low-Energy Positron Scattering by Pyridine and Aniline. J Phys Chem A 2022; 126:7924-7929. [DOI: 10.1021/acs.jpca.2c05928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Alessandra Souza Barbosa
- Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, Curitiba, Paraná81531-980, Brazil
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2
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Bergami M, Santana ALD, Charry Martinez J, Reyes A, Coutinho K, Varella MTDN. Multicomponent Quantum Mechanics/Molecular Mechanics Study of Hydrated Positronium. J Phys Chem B 2022; 126:2699-2714. [PMID: 35377644 DOI: 10.1021/acs.jpcb.1c10124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We propose a model for solvated positronium (Ps) atoms in water, based on the sequential quantum mechanics/molecular mechanics (s-QM/MM) protocol. We developed a Lennard-Jones force field to account for Ps-water interactions in the MM step. The repulsive term was obtained from a previously reported model for the solvated electron, while the dispersion constant was derived from the Slater-Kirkwood formula. The force field was employed in classical Monte Carlo (MC) simulations to generate Ps-solvent configurations in the NpT ensemble, while the quantum properties were computed with the any-particle molecular orbital method in the subsequent QM step. Our approach is general, as it can be applied to other liquids and materials. One basically needs to describe the solvated electron in the environment of interest to obtain the Ps solvation model. The thermodynamical properties computed from the MC simulations point out similarities between the solvation of Ps and noble gas atoms, hydrophobic solutes that form clathrate structures. We performed convergence tests for the QM step, with particular attention to the choice of basis set and expansion centers for the positronic and electronic subsystems. Our largest model was composed of the Ps atom and 22 water molecules in the QM region, corresponding to the first solvation shell, surrounded by 128 molecules described as point charges. The mean electronic and positronic vertical detachment energies were (4.73 ± 0.04) eV and (5.33 ± 0.04) eV, respectively. The latter estimates were computed with Koopmans' theorem corrected by second-order self-energies, for a set of statistically uncorrelated MC configurations. While the Hartree-Fock wave functions do not properly account for the annihilation rates, they were useful for numerical tests, pointing out that annihilation is more sensitive to the choice of basis sets and expansion centers than the detachment energies. We further explored a model with reduced solute cavity size by changing the Ps-solvent force field. Although the pick-off annihilation lifetimes were affected by the cavity size, essentially the same conclusions were drawn from both models.
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Affiliation(s)
- Mateus Bergami
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1371 CP 66318, CEP 05508-090 São Paulo, SP, Brazil
| | - Andre L D Santana
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1371 CP 66318, CEP 05508-090 São Paulo, SP, Brazil
| | - Jorge Charry Martinez
- Department of Physics and Materials Science, University of Luxembourg, L-1511 Luxembourg City, Luxembourg
| | - Andres Reyes
- Department of Chemistry, Universidad Nacional de Colombia, Av. Cra. 30 #45-03, 111321 Bogotá, Colombia
| | - Kaline Coutinho
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1371 CP 66318, CEP 05508-090 São Paulo, SP, Brazil
| | - Márcio T do N Varella
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1371 CP 66318, CEP 05508-090 São Paulo, SP, Brazil
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3
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Cheong Z, Moreira GM, Bettega MHF, Blanco F, Garcia G, Brunger MJ, White RD, Sullivan JP. A comparison of experimental and theoretical low energy positron scattering from furan. J Chem Phys 2020; 153:244303. [PMID: 33380099 DOI: 10.1063/5.0027874] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Abstract
This paper presents a joint experimental and theoretical study of positron scattering from furan. Experimental data were measured using the low energy positron beamline located at the Australian National University and cover an energy range from 1 eV to 30 eV. Cross sections were measured for total scattering, total elastic and inelastic scattering, positronium formation, and differential elastic scattering. Two theoretical approaches are presented: the Schwinger multichannel method and the independent atom method with screening corrected additivity rule. In addition, our data are compared to corresponding electron scattering results from the same target with a number of significant differences observed and discussed.
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Affiliation(s)
- Z Cheong
- Laser Physics Centre, Research School of Physics, Australian National University, Canberra, Australia
| | - G M Moreira
- Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, 81531-980 Curitiba, Paraná, Brazil
| | - M H F Bettega
- Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, 81531-980 Curitiba, Paraná, Brazil
| | - F Blanco
- Departamento de Fısica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid, E-28040 Madrid, Spain
| | - G Garcia
- Instituto de Fısica Fundamental, Consejo Superior de Investigaciones Cientificas, Serrano 113-bis, 28006 Madrid, Spain
| | - M J Brunger
- College of Science and Engineering, Flinders University, Adelaide, SA, Australia
| | - R D White
- College of Science and Engineering, James Cook University, Townsville, Qld., Australia
| | - J P Sullivan
- Laser Physics Centre, Research School of Physics, Australian National University, Canberra, Australia
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Positron annihilation localization by nanoscale magnetization. Sci Rep 2020; 10:20262. [PMID: 33219274 PMCID: PMC7680104 DOI: 10.1038/s41598-020-76980-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Accepted: 11/02/2020] [Indexed: 11/09/2022] Open
Abstract
In positron emission tomography (PET), the finite range over which positrons travel before annihilating with an electron places a fundamental physical limit on the spatial resolution of PET images. After annihilation, the photon pair detected by the PET instrumentation is emitted from a location that is different from the positron-emitting source, resulting in image blurring. Here, we report on the localization of positron range, and hence annihilation quanta, by strong nanoscale magnetization of superparamagnetic iron oxide nanoparticles (SPIONs) in PET-MRI. We found that positron annihilations localize within a region of interest by up to 60% more when SPIONs are present (with [Fe] = 3 mM) compared to when they are not. The resulting full width at half maximum of the PET scans showed the spatial resolution improved by up to \documentclass[12pt]{minimal}
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\begin{document}$$\approx$$\end{document}≈ 30%. We also found evidence suggesting that the radiolabeled SPIONs produced up to a six-fold increase in ortho-positronium. These results may also have implications for emerging cancer theranostic strategies, where charged particles are used as therapeutic as well as diagnostic agents and improved dose localization within a tumor is a determinant of better treatment outcomes.
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Abstract
We report elastic integral and differential cross sections for positron collisions with pyrazine (C4H4N2), for energies up to 10 eV. The cross sections were calculated with the Schwinger multichannel method in the static plus polarization approximation. Our computed elastic integral cross section indicates the presence of a Ramsauer-Townsend minimum and a bound state in the Ag scattering symmetry. In the absence of results in the literature on collisions of positrons with pyrazine, we compare the present results with results for pyrimidine and benzene molecules available in the literature.
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Affiliation(s)
- Giseli M Moreira
- Departamento de Fı́sica , Universidade Federal do Paraná , Caixa Postal 19044, 81531-980 Curitiba , Paraná , Brazil
| | - Márcio H F Bettega
- Departamento de Fı́sica , Universidade Federal do Paraná , Caixa Postal 19044, 81531-980 Curitiba , Paraná , Brazil
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Jones DB, Ali E, Ning CG, Ferreira da Silva F, Ingólfsson O, Lopes MCA, Chakraborty HS, Madison DH, Brunger MJ. A dynamical (e,2e) investigation into the ionization of the outermost orbitals of R-carvone. J Chem Phys 2019; 151:124306. [PMID: 31575183 DOI: 10.1063/1.5123526] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
We report an experimental and theoretical investigation into the dynamics of electron-impact ionization of R-carvone. Experimental triple differential cross sections are obtained in asymmetric coplanar kinematic conditions for the ionization of the unresolved combination of the three outermost molecular orbitals (41a-39a) of R-carvone. These cross sections are compared with theoretical cross sections calculated within a molecular 3-body distorted wave (M3DW) framework employing either a proper orientation average or orbital average to account for the random orientation of the molecule probed in the experiment. Here, we observe that the overall scattering behavior observed in the experiment is fairly well reproduced within the M3DW framework when implementing the proper average over orientations. The character of the ionized orbitals also provides some qualitative explanation for the observed scattering behavior. This represents substantial progress when trying to describe the scattering dynamics observed for larger molecules under intermediate-impact energy and asymmetric energy sharing scattering conditions.
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Affiliation(s)
- D B Jones
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - E Ali
- Department of Natural Sciences, D. L. Hubbard Center for Innovation, Northwest Missouri State University, Maryville, Missouri 64468, USA
| | - C G Ning
- State Key Laboratory of Low-Dimensional Quantum Physics, Department of Physics, Tsinghua University, Beijing 100084, China
| | - F Ferreira da Silva
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - O Ingólfsson
- Department of Chemistry and Science Institute, University of Iceland, 107 Reykjavík, Iceland
| | - M C A Lopes
- Departamento de Física, Universidade Federal de Juiz de Fora, Juiz de Fora, MG 36036-900, Brazil
| | - H S Chakraborty
- Department of Natural Sciences, D. L. Hubbard Center for Innovation, Northwest Missouri State University, Maryville, Missouri 64468, USA
| | - D H Madison
- Department of Physics, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
| | - M J Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
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Barbosa AS, Bettega MHF. Elastic collisions of low-energy positrons with tetrahydrofuran. J Chem Phys 2019; 150:184305. [DOI: 10.1063/1.5093404] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Alessandra Souza Barbosa
- Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, 81531-980 Curitiba, Paraná, Brazil
| | - Márcio H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, 81531-980 Curitiba, Paraná, Brazil
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Stokes PW, Philippa B, Cocks D, White RD. Generalized balance equations for charged particle transport via localized and delocalized states: Mobility, generalized Einstein relations, and fractional transport. Phys Rev E 2017; 95:042119. [PMID: 28505754 DOI: 10.1103/physreve.95.042119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Indexed: 11/07/2022]
Abstract
A generalized phase-space kinetic Boltzmann equation for highly nonequilibrium charged particle transport via localized and delocalized states is used to develop continuity, momentum, and energy balance equations, accounting explicitly for scattering, trapping and detrapping, and recombination loss processes. Analytic expressions detail the effect of these microscopic processes on mobility and diffusivity. Generalized Einstein relations (GER) are developed that enable the anisotropic nature of diffusion to be determined in terms of the measured field dependence of the mobility. Interesting phenomena such as negative differential conductivity and recombination heating and cooling are shown to arise from recombination loss processes and the localized and delocalized nature of transport. Fractional transport emerges naturally within this framework through the appropriate choice of divergent mean waiting time distributions for localized states, and fractional generalizations of the GER and mobility are presented. Signature impacts on time-of-flight current transients of recombination loss processes via both localized and delocalized states are presented.
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Affiliation(s)
- Peter W Stokes
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Bronson Philippa
- College of Science and Engineering, James Cook University, Cairns, QLD 4870, Australia
| | - Daniel Cocks
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Ronald D White
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
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9
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Brunger MJ. Electron scattering and transport in biofuels, biomolecules and biomass fragments. INT REV PHYS CHEM 2017. [DOI: 10.1080/0144235x.2017.1301030] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Barbosa AS, Pastega DF, Bettega MHF. Low-energy positron scattering by pyrimidine. J Chem Phys 2015; 143:244316. [DOI: 10.1063/1.4938427] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Alessandra Souza Barbosa
- Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, 81531-990 Curitiba, Paraná, Brazil
| | - Diego F. Pastega
- Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, 81531-990 Curitiba, Paraná, Brazil
| | - Márcio H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, 81531-990 Curitiba, Paraná, Brazil
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Jones DB, Neves RFC, Lopes MCA, da Costa RF, Varella MTDN, Bettega MHF, Lima MAP, García G, Blanco F, Brunger MJ. Excitation of vibrational quanta in furfural by intermediate-energy electrons. J Chem Phys 2015; 143:224304. [PMID: 26671372 DOI: 10.1063/1.4936631] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report cross sections for electron-impact excitation of vibrational quanta in furfural, at intermediate incident electron energies (20, 30, and 40 eV). The present differential cross sections are measured over the scattered electron angular range 10°-90°, with corresponding integral cross sections subsequently being determined. Furfural is a viable plant-derived alternative to petrochemicals, being produced via low-temperature plasma treatment of biomass. Current yields, however, need to be significantly improved, possibly through modelling, with the present cross sections being an important component of such simulations. To the best of our knowledge, there are no other cross sections for vibrational excitation of furfural available in the literature, so the present data are valuable for this important molecule.
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Affiliation(s)
- D B Jones
- School of Chemical and Physical Sciences, Flinders University, GPO Box 2100, Adelaide, South Australia 5001, Australia
| | - R F C Neves
- School of Chemical and Physical Sciences, Flinders University, GPO Box 2100, Adelaide, South Australia 5001, Australia
| | - M C A Lopes
- Departamento de Física, Universidade Federal de Juiz de Fora, 36036-900, Juiz de Fora, MG, Brazil
| | - R F da Costa
- Instituto de Física "Gleb Wataghin," Universidade Estadual de Campinas, Campinas, 13083-859 São Paulo, Brazil
| | - M T do N Varella
- Instituto de Física, Universidade de São Paulo, CP 66318, 05315-970 São Paulo, São Paulo, Brazil
| | - M H F Bettega
- Departamento de Física, Universidade Federal do Paraná, CP 19044, 81531-990 Curitiba, Paraná, Brazil
| | - M A P Lima
- Instituto de Física "Gleb Wataghin," Universidade Estadual de Campinas, Campinas, 13083-859 São Paulo, Brazil
| | - G García
- Instituto de Física Fundamental, CSIC, Serrano 113-bis, 28006 Madrid, Spain
| | - F Blanco
- Departamento de Física Atómica, Molecular y Nuclear, Universidad Complutense de Madrid, Madrid E-28040, Spain
| | - M J Brunger
- School of Chemical and Physical Sciences, Flinders University, GPO Box 2100, Adelaide, South Australia 5001, Australia
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