Responsiveness of soil nitrogen fractions and bacterial communities to afforestation in the Loess Hilly Region (LHR) of China

Microbial diversity and abundance in loamy sandy soil under renaturalization of former arable land

The abundance and taxonomic diversity of different physiological groups of bacteria and fungi and yeasts in the fields of the long-term experiment of renaturalization of infertile arable soils were studied. The experiment involved four land conversion methods: conversion of arable land to cultivated meadow, soil and forest, leaving the experimental area of arable land. With these studies, we have begun to fill research gaps related to the taxonomic and functional diversity of soil microorganisms. The greatest changes in the abundance of cultivable organotrophic, diazotrophic and nitrifying bacteria were found to be observed in those areas where anthropogenic activities took place, i.e. in the cultivated field and in the cultural grassland. The abundance of bacteria was relatively lower and that of fungi was higher in the soil and in the cultivated area. It was also found that the higher jumps in the abundance of diazotrophs and nitrifiers during the respective stages of vegetation were caused by the applied agrotechnical measures and the cultivation of the respective plants. The abundance of cultivable bacteria was up to 10⁵, and the number of fungi was 10³ CFU in 1 g of dry soil. The taxonomic structure was determined by Next Generation Sequencing. The taxonomic groups of Actino- and Proteobacteria had the highest abundance. The highest number of fungal OTU was distinguished by Ascomycota fungi (37-42% of the total number of fungi). Comparing the taxonomic structure of all studied samples, the area planted with pines stands out, where an increase in the taxonomic group of Basidiomycota fungi (up to 24%) is observed at the expense of Ascomycota fungi. In order to have a balanced, fully rich soil, efforts must be made to maintain a stable structure of microbial communities, which can only be achieved through targeted research.

High-Throughput Absolute Quantification Sequencing Reveals that a Combination of Leguminous Shrubs Is Effective in Driving Soil Bacterial Diversity During the Process of Desertification Reversal

Desertification leads to the extreme fragility of ecosystems and seriously threatens ecosystem functioning in desert areas. The planting of xerophytes, especially leguminous shrubs, is an effective and common means to reverse desertification. Soil microorganisms play a crucial role in nutrient cycling and energy flow in ecosystems. However, the effects of introducing leguminous shrubs on soil microbial diversity and the relevant mechanisms are not clear. Here, we employed the high-throughput absolute quantification 16S rRNA sequencing method to analyze the diversity of soil bacteria in sand-fixing areas of mixed shrublands with three combinations of shrubs, i.e., C. korshinskii × Corethrodendron scoparium (CaKCoS), C. korshinskii × Calligonum mongolicum (CaKCaM), and C. scoparium × C. mongolicum (CoSCaM), in the south of the Mu Us Sandy Land, China. This area suffered from moving dunes 20 years ago, but after introducing these shrubs to fix the dunes, the ecosystem was restored. Additionally, the effects of soil physicochemical properties on soil bacterial composition and diversity were analyzed with redundancy analysis (RDA) and structural equation modeling (SEM). It was found that the Shannon index of soil bacteria in CaKCoS was significantly higher than that in CaKCaM and CoSCaM, and the abundance of the dominant phyla, including Actinobacteria, Proteobacteria, Acidobacteria, Chloroflexi, Planctomycetes, Thaumarchaeota, Armatimonadetes, candidate_division_WPS-1, and Nitrospirae, increased significantly in CaKCoS and CaKCaM compared to that in CoSCaM. RDA showed that the majority of soil properties, such as total nitrogen (TN), available potassium (AK), N:P ratio, soil moisture (SM), and available phosphorus (AP), were important soil environmental factors affecting the abundance of the dominant phyla, and RDA1 and RDA2 accounted for 56.66% and 2.35% of the total variation, respectively. SEM showed that the soil bacterial α-diversity was positively affected by the soil organic carbon (SOC), N:P ratio, and total phosphorus (TP). Moreover, CaKCoS had higher SM, total carbon (TC), total potassium (TK), and AP than CaKCaM and CoSCaM. Collectively, these results highlight a conceptual framework in which the combination of leguminous shrubs can effectively drive soil bacterial diversity by improving soil physicochemical properties and maintaining ecosystem functioning during desertification reversal.

14 year applications of chemical fertilizers and crop straw effects on soil labile organic carbon fractions, enzyme activities and microbial community in rice-wheat rotation of middle China

Traditional fertilization management can damage soil structure and lead to severe soil erosion. The practice of crop straw returning to the field reduces the negative impact of straw burning and improves soil quality. We investigated the effects of these agricultural practices on soil organic carbon components, enzyme activities, and soil microorganisms over 14 years of field experiments. Specifically, we studied four management strategies: no fertilizer or crop straw returning (CK), traditional chemical fertilization (NPK), crop straw returning (S), and crop straw returning with chemical fertilizer (NPKS). We found NPKS treatments significantly (P < 0.05) increased the dissolved organic carbon (DOC), microbial biomass carbon (MBC), particulate organic carbon (POC) and readily oxidized organic carbon (ROC) concentrations by 79.32 %, 82.16 %, 92.46 %, and 104.32 % relative to CK. Furthermore, under NPKS, the activities of soil enzymes related C, N, and P (α-glucosidase (αG), β-glucosidase (βG), cellulase (CBH), xylanase (βX), acetyl β-glucosaminidase (NAG), leucine aminopeptidase (LAP), and acid phosphate (AP)) were increased by 54.66 %, 113.26 %, 76.73 %, 52.41 %, 45.74 %, 56.69 %, and 68.92 % relative to CK, respectively. Redundancy analysis and structural equation modelling showed that straw returning had positive effects on soil microbial community diversity and richness, and also improved microbial activity which is favorable in the degradation of soil carbon. Furthermore, we found that soil fungi were more sensitive than bacteria to changes in soil carbon composition and enzyme activities following straw returning. These results suggest that straw returning combined with chemical fertilizer can be an effective strategy to improve soil labile organic carbon components, enzyme activities, and ecological function of microorganisms.

Response of cbbL-harboring microorganisms to precipitation changes in a naturally-restored grassland

The impact of the long-term uneven precipitation distribution model on the diversity and community composition of soil C-fixing microorganisms in arid and semiarid grasslands remains unclear. In 2015, we randomly set up five experimental plots with precipitation gradients on the natural restoration grassland of the Loess Plateau (natural precipitation, NP; ± 40% natural precipitation: decreased precipitation (DP), DP40; increased precipitation (IP), IP40; ± 80% natural precipitation: DP80; IP80). In the third and fifth years after the experimental layout (spanned two years), we explored the cbbL-genes, which are functional genes in the Calvin cycle, harboring microbial diversity and community composition under different precipitation treatments. The results showed that the increase in mean annual precipitation significantly changed the cbbL-harboring microbial alpha diversity, especially when controlling for 40% natural precipitation. The response of the dominant microbial communities to interannual increased precipitation variation shifted from Gammaproteobacteria (Bradyrhizobium) to Betaproteobacteria (Variovorax). The structural equation model showed that precipitation directly affected the cbbL-harboring microbial diversity and community composition and indirectly by affecting soil NO₃^- (mg N kg ^-1), soil organic matter, dissolved organic N content, and above- and underground biomass. In conclusion, studying how cbbL-harboring microbial diversity and community composition respond to uneven precipitation variability provides new insights into the ecological processes of C-fixing microbes in semi-arid naturally-restored grasslands dominated by the Calvin cycle.

Effects of Sugarcane and Soybean Intercropping on the Nitrogen-Fixing Bacterial Community in the Rhizosphere

Intercropping between sugarcane and soybean is widely used to increase crop yield and promote the sustainable development of the sugarcane industry. However, our understanding of the soil microenvironment in intercropping systems, especially the effect of crop varieties on rhizosphere soil bacterial communities, remains poor. We selected two excellent sugarcane cultivars, Zhongzhe1 (ZZ1) and Zhongzhe9 (ZZ9), from Guangxi and the local soybean variety GUIZAO2 from Guangxi for field interplanting experiments. These two cultivars of sugarcane have good drought resistance. Rhizosphere soil samples were collected from the two intercropping systems to measure physicochemical properties and soil enzyme activities and to extract total soil DNA for high-throughput sequencing. We found that the diversity of the rhizosphere bacterial community was significantly different between the two intercropping systems. Compared with ZZ1, the ZZ9 intercropping system enriched the nitrogen-fixing bacteria, increasing the available nitrogen content by 18% compared with that with ZZ1. In addition, ZZ9 intercropping with soybean formed a more compact rhizosphere environment than ZZ1, thus providing favorable conditions for sugarcane growth. These results provide guidance for the sugarcane industry, especially for the management of sugarcane and soybean intercropping in Guangxi, China.

Structural changes in the gut microbiota community of the black-necked crane (Grus nigricollis) in the wintering period

During overwintering of black-necked cranes (Grus nigricollis), the composition and function of the gut microbiota changes are of considerable interest for understanding its environmental adaption mechanism. In this study, we characterized the structure of the gut microbiota from the black-necked crane in the Dashanbao wintering area, and compared the early-winter (November) microbiota to the late-winter (March of the next year) microbiota. The results showed that the gut microbiota diversity of black-necked crane in the early-overwintering stage was higher than that in the late-overwintering stage, but it did not reach a significant level. Gut microbiota taxonomic composition analysis showed that relative abundance of Bacteroidota increased significantly, and showed decreased Firmicutes to Bacteroidota ratio at the phylum level, meanwhile, the abundance of Lactobacillus decreased significantly at the genus level. Explain gut microbiota between the early- and late-wintering showed some differences in microbiota richness but maintained a relatively conservative microbiota structure. PICRUSt2 method was used to predict and analyze the KEGG functional abundance of 16S rDNA sequences of bacteria, it was found that the changes in gut microbiota composition increased the abundance of bacteria associated with amino acid biosynthesis and acid metabolism in the late stage of overwintering. This work provides basic data for black-necked crane gut microbiota study, which might further contribute to their protection.

Effect of cotton residues incorporation on soil properties, organic nitrogen fractions, and nitrogen-mineralizing enzyme activity under long-term continuous cotton cropping

The objective of this experiment was to study the effect of cotton residues incorporation on soil properties, soil organic nitrogen (N) fractions, and N-mineralizing enzyme (protease, and urease) activity in the 0–40 cm soil layer in the long-term continuous cotton field. In this experiment, seven treatments, including cotton residues incorporation for 5, 10, 15 and 20 years (marked as 5a, 10a, 15a, and 20a) and continuous cropping for 5, 10 and 20 years (marked as CK5, CK10 and CK20) were conducted. The results showed that the soil organic carbon (C) and N increased gradually with the increase in the duration of continuous cropping with cotton residues incorporation. Compared with CK20, the 20a treatments reduced the content of amino acid N (AAN), ammonium N (AN), amino sugar N (ASN), hydrolysable unidentified N (HUN), and acid insoluble N (AIN) significantly by 48.6, 32.2, 96.9, 48.3, and 38.7%, respectively (p < 0.05). The activity of protease and urease in 20a treatments significantly increased by 53.4 and 53.1% respectively as compared to CK20 (p < 0.05). Soil organic C and N-mineralizing enzyme activity decreased with the increase in cropping duration in the absence of cotton residues incorporation, while the organic N increased slightly. In conclusion, cotton residues returning can increase the storage of soil organic C and N in long-term continuous cropping cotton field, and improve the soil quality and soil fertility of continuous cropping cotton field.

Bacteria are more sensitive than fungi to moisture in eroded soil by natural grass vegetation restoration on the Loess Plateau

Community composition and respiration rates of bacterial and fungal communities from grass-covered eroded soils of the Loess Plateau responded differently to constant and increasing soil moisture (SM) regimes. The soils were incubated with SM contents of 5%, 30%, and 45% and with wetting processes in the SM ranges from 5% to 30% (5-30%), from 5% to 30% to 45% (5-30-45%) and from 30% to 45% (30-45%); high-throughput sequencing and co-occurrence network analyses were applied to investigate the different responses of the bacterial and fungal communities to changed SM. Our results showed that bacteria were more sensitive than fungi to changes in SM. The dominant bacterial communities converted from Actinobacterial to Proteobacteria and Acidobacteria in 5-30-45% wetting procedure. Firmicutes preferred wet condition and exhibited slow resilience. However, no difference was observed for the Chloroflexi communities across any sample. The obvious difference in fungal composition was found between the wetting process of 5-30-45% and constant 45% SM. During the 5-30-45% procedure, the respiration rate was higher than that at 30-45% procedure after incubation for 24 days. The respiration rate in 5-30% procedure was lower than that of 5-30-45% process after incubation for 16-27 days. The larger effects on bacterial response than on fungi were verified in network analysis. Multiple stepwise regression analysis showed that 84.40% of the variation in bacterial richness and diversity as well as fungal diversity can be explained by changes in soil respiration rate in response to wetting procedure. Understanding the response of difference between bacterial and fungal community composition, phylum-levels networks and respiration rate to changes in SM is essential for the management of plant-soil-water relationship in the ecosystem after natural vegetation restoration on the Loess Plateau.

Effect of Nitrogen Fertilizer on Soil CO2 Emission Depends on Crop Rotation Strategy

Developing environmentally friendly and sustainable nitrogen (N) fertilizer management strategies is crucial in mitigating carbon dioxide (CO2) emission from soil. How N fertilizer management practices influence soil CO2 emission rates under different crop rotations remains unclear. The aim of this study was to assess the impact on soil CO2 emission and soil physicochemical properties of three N fertilizer treatments including traditional rate (TF), optimized rate (0.8TF), and no fertilizer (NF) under three different crop rotation treatments: wheat-fallow (WF), wheat-soybean (WS), and wheat-maize (WM) over two years in a field experiment in northwest China. The rates were 5.51, 5.60, and 5.97 μmol·m−2·s−1 of mean soil CO2 emission under the TF, 0.8TF, and NF treatments, respectively. Mean soil CO2 emission rates were 21.33 and 26.99% higher under the WM rotation compared with the WF and WS rotations, respectively. The WS rotation showed higher soil nutrient content and lower soil CO2 emissions, and reduced fertilizer application. Importantly, soil organic carbon (SOC) concentration in the topsoil can be maximized by including either a summer legume or a summer maize crop in winter wheat rotations, and by applying N fertilizer at the optimal rate. This may be particularly beneficial in the dryland cropping systems of northern China.

Successional trajectory of bacterial communities in soil are shaped by plant-driven changes during secondary succession

This study investigated the potential role of a nitrogen-fixing early-coloniser Alnus Nepalensis D. Don (alder) in driving the changes in soil bacterial communities during secondary succession. We found that bacterial diversity was positively associated with alder growth during course of ecosystem development. Alder development elicited multiple changes in bacterial community composition and ecological networks. For example, the initial dominance of actinobacteria within bacterial community transitioned to the dominance of proteobacteria with stand development. Ecological networks approximating species associations tend to stabilize with alder growth. Janthinobacterium lividum, Candidatus Xiphinematobacter and Rhodoplanes were indicator species of different growth stages of alder. While the growth stages of alder has a major independent contribution to the bacterial diversity, its influence on the community composition was explained conjointly by the changes in soil properties with alder. Alder growth increased trace mineral element concentrations in the soil and explained 63% of variance in the Shannon-diversity. We also found positive association of alder with late-successional Quercus leucotrichophora (Oak). Together, the changes in soil bacterial community shaped by early-coloniser alder and its positive association with late-successional oak suggests a crucial role played by alder in ecosystem recovery of degraded habitats.

Microalgae and Phototrophic Purple Bacteria for Nutrient Recovery From Agri-Industrial Effluents: Influences on Plant Growth, Rhizosphere Bacteria, and Putative Carbon- and Nitrogen-Cycling Genes

Microalgae (MA) and purple phototrophic bacteria (PPB) have the ability to remove and recover nutrients from digestate (anaerobic digestion effluent) and pre-settled pig manure that can be Utilized as bio-fertilizer and organic fertilizer. The objective of this study was to compare the effectiveness of MA and PPB as organic fertilizers and soil conditioners in relation to plant growth and the soil biological processes involved in nitrogen (N) and carbon (C) cycling. To this end, a glasshouse experiment was conducted using MA and PPB as bio-fertilizers to grow a common pasture ryegrass (Lolium rigidum Gaudin) with two destructive harvests (45 and 60 days after emergence). To evaluate the rhizosphere bacterial community, we used barcoded PCR-amplified bacterial 16S rRNA genes for paired-end sequencing on the Illumina Mi-Seq. Additionally, we used phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) analysis for the detection of putative functional genes associated with N and soil-C cycling. There was a significant increase in plant growth when the soil was amended with PPB, which almost performed as well as the chemical fertilizers. Analysis of the rhizosphere bacteria after the second harvest revealed a greater abundance of Firmicutes than in the first harvest. Members of this phylum have been identified as a biostimulant for plant growth. In contrast, the MA released nutrients more slowly and had a profound effect on N cycling by modulating N mineralization and N retention pathways. Thus, MA could be developed as a slow-release fertilizer with better N retention, which could improve crop performance and soil function, despite nutrient losses from leaching, runoff, and atmospheric emissions. These data indicate that biologically recovered nutrients from waste resources can be effective as a fertilizer, resulting in enhanced C- and N-cycling capacities in the rhizosphere.

Soil respiration from fields under three crop rotation treatments and three straw retention treatments

Straw retention is an effective method to conserve soil water content and improve soil carbon stocks. However, how soil carbon dynamics respond to different straw retention practices remains unclear. In this study, we investigated soil respiration and soil carbon sequestration at depths of 0-100 cm. We conducted a two-year field experiment with three crop rotation treatments and three straw retention treatments in northwest China. The straw retention treatments included no straw retention (NS), retention of half the straw (HS), and retention of the total amount of straw (TS). The crop rotations treatments included winter wheat plus summer soybean (WS), winter wheat plus summer maize (WM), and winter wheat plus summer fallow (WF). Mean soil respiration rates under WS, WM, and WF treatments were 5.14, 6.53, and 5.49 μmol·m-2·s-1; and 5.67, 5.47, and 6.03 μmol·m-2·s-1 under TS, HS, and NS treatments. The mean soil water content were 15.50%, 15.57%, and 15.74% under WS, WM, and WF rotations, and 15.81%, 15.41%, and 15.50% under TS, HS, and NS treatments. The soil organic carbon (SOC) concentration was higher with increased straw retention, and lower at deeper soil depths. Mean SOC concentrations under different rotations and straw treatments of TS, HS, and NS, respectively were as follows: WS: 6.91, 6.63, 6.39 g/kg; WM: 6.90, 6.72, 6.57 g/kg; and WF: 6.49, 6.52, 6.37 g/kg. Soil temperature was the main determinant of soil respiration rates. We conclude that WS rotation resulted in lower soil respiration, WM rotation resulted in a higher soil carbon sequestration potential, and WF rotation resulted in higher soil water content. However, continued, long-term monitoring is needed to confirm the effect of rotations and straw retention on soil respiration and carbon sequestration in dryland cropping systems in northern China.

Dairy soil bacterial responses to nitrogen application in simulated Italian ryegrass and white clover pasture

Through clearing and use of fertilizer and legumes, areas of southwestern Australia's unique coastal sand plains can support relatively low-cost dairies. However, the ancient, highly weathered nature of the soils in this region makes the dairies susceptible to a range of threats, including nutrient leaching and erosion. Despite this, Western Australian dairy cows typically produce up to 5,500 L of milk per head annually supported by inorganic nitrogen (N) fertilizer (commonly 50:50 urea and ammonium sulfate) at rates up to <320 kg of N/ha per year. Where hotspots exist (up to 2,000 kg of N/ha per year), total N exceeds pasture requirements. We investigated plant and soil bacteria responses to N fertilizer rates consistent with Australian legislated production practices on dairy farms for pure and mixed swards of white clover (Trifolium repens) and Italian ryegrass (Lolium multiflorum) in a long-term pasture experiment in controlled glasshouse conditions. Although the soil bacterial community structure at phylum level was similar for white clover and Italian ryegrass, relative abundances of specific subgroups of bacteria differed among plant species according to the N fertilizer regimen. Marked increases in relative abundance of some bacterial phyla and subphyla indicated potential inhibition of N cycling, especially for N hotspots in soil. Ammonium concentration in soil was less correlated with dominance of some N-cycling bacterial phyla than was nitrate concentration. Changes in bacterial community structure related to altered nutrient cycling highlight the potential for considering this area of research in policy assessment frameworks related to nutrient loads in dairy soils, especially for N.

Soil Organic Carbon Chemical Functional Groups under Different Revegetation Types Are Coupled with Changes in the Microbial Community Composition and the Functional Genes

Different revegetatiom types can affect the chemical composition of soil organic carbon (SOC), soil microbial community and the functional genes related to carbon cycle. However, the relationships between SOC chemical functional groups and soil microbial communities and the functional genes remains poorly unclear under different revegetation types. Using the solid-state 13C nuclear magnetic resonance (NMR) spectroscopy, we examined changes in the SOC chemical composition of five soils (0–10 cm depth) from Larix gmelinii Rupr. (LG), Pinus koraiensis Sieb. (PK), Quercus mongolica Fisch. (QM), Juglans mandshurica Maxim. (JM), and conifer-broadleaf forest (CB). And the soil microbial community genes related to metabolism of macro-molecular compounds were determined via whole genome shotgun based on Illumina HiSeq. Our results indicated that broadleaf forests (JM, QM) had increased the contents of soil total carbon (C), total nitrogen (N), dissolved organic carbon (DOC), and microbial biomass carbon (MBC), compared with coniferous forests (LG, PK) and the conifer-broadleaf forest (CB). While, the coniferous forests generated a lower O-alcoxyl C, a higher alkyl C, and the ratio of alkyl C/O-alkyl C than broadleaf forests. A total of four kingdoms were identified via whole metagenome shotgun sequencing, including eight archaea, 55 bacteria, 15 eukaryota, and two viruses, giving a total 80 phyla. The contents of alkyne C, phenolic C, methoxyl C, COO/NC=O, and alkyl C were strong related to the composition of soil microbial community and their contents illuminated a major part of the variation in soil microbial composition. We detected seven corresponding macro-molecular compounds of different organic carbon functional group, and 244 genes related to metabolism across all samples, and soil total C, total N, and DOC could be the main factors for microbial functional gene composition. Interestingly, the relative abundances of different SOC chemical functional groups, the phylogenetic distance for microbes, the genes of C cycling based on the KEGG database, and the relative abundance of genes related to metabolism of macro-molecular compounds of different SOC chemical functional groups under different revegetation types all could be divided into three groups, including PK plus LG, JM plus QM, and CB. Our results also illustrated that variations in SOC chemical functional groups were strongly associated with changes of soil microbial community taxa and functional genes, which might be affected by the changes of soil characteristics.

The effects of afforestation on soil bacterial communities in temperate grassland are modulated by soil chemical properties

Grassland afforestation dramatically affects the abiotic, biotic, and ecological function properties of the original ecosystems. Interference from afforestation might disrupt the stasis of soil physicochemical properties and the dynamic balance of microbiota. Some studies have suggested low sensitivity of soil properties and bacterial community to afforestation, but the apparent lack of a significant relationship is probably due to the confounding effects of the generalist habitat and rare bacterial communities. In this study, soil chemical and prokaryotic properties in a 30-year-old Mongolia pine (Pinus sylvestris var. mongolica Litv.) afforested region and adjacent grassland in Inner Mongolia were classified and quantified. Our results indicate that the high richness of rare microbes accounts for the alpha-diversity of the soil microbiome. Few OTUs of generalist (core bacteria) and habitat-specialist bacteria are present. However, the high abundance of this small number of OTUs governs the beta-diversity of the grassland and afforested land bacterial communities. Afforestation has changed the soil chemical properties, thus indirectly affecting the soil bacterial composition rather than richness. The contents of soil P, Ca²⁺, and Fe³⁺ account for differentially abundant OTUs such as Planctomycetes and subsequent changes in the ecologically functional potential of soil bacterial communities due to grassland afforestation. We conclude that grassland afforestation has changed the chemical properties and composition of the soil and ecological functions of the soil bacterial community and that these effects of afforestation on the microbiome have been modulated by changes in soil chemical properties.

Dynamics of nitrogen and active nitrogen components across seasons under varying stand densities in a Larix principis-rupprechtii (Pinaceae) plantation

Changes in the concentration of soil nitrogen (N) or its components may directly affect ecosystem functioning in forestry. Thinning of forest stands, a widely used forestry management practice, may transform soil nutrients directly by altering the soil environment, or indirectly by changing above- or belowground plant biomass. The study objectives were to determine how tree stem density affects the soil N pool and what mechanisms drive any potential changes. In this study, N and its active components were measured in the soil of a Larix principis-rupprechtii plantation across two full growing seasons, in 12 (25 × 25 m) plots: (low thinning, removal of 15% of the trees, three plot repetitions), moderate thinning (MT) (35% removal) and heavy thinning (HT) (50% removal) and no thinning control. Environmental indices, like the light condition, soil respiration, soil temperatures, and prescription, were measured in the plots also. Results indicated that soil total nitrogen (STN) was affected by tree stem density adjustments in the short-term; STN generally increased with decreasing tree stem density, reaching its highest concentration in the MT treatment before decreasing in HT. This pattern was echoed by the DON/STN ratio dissolved organic nitrogen (DON) under MT. A lower DON/STN was measured across the seasons. Microbial biomass nitrogen (MBN) and the SOC/STN (soil organic carbon (SOC)) ratio and density treatments influenced MBN concentration and inhibited SOC/STN. MT tended to accumulate more STN, produce lower DON/STN and had a generally higher microbial activity, which may be partly ascribed to the higher MBN value, MBN/STN ratio and lower DON/STN. The water conditions (soil moisture), light and soil temperatures could partly be responsible for the N pool dynamic in the different density treatments.

Spatial Patterns and Drivers of Microbial Taxa in a Karst Broadleaf Forest

Spatial patterns and drivers of soil microbial communities have not yet been well documented. Here, we used geostatistical modeling and Illumina sequencing of 16S rRNA genes to explore how the main microbial taxa at the phyla level are spatially distributed in a 25-ha karst broadleaf forest in southwest China. Proteobacteria, dominated by Alpha- and Deltaproteobacteria, was the most abundant phylum (34.51%) in the karst forest soils. Other dominating phyla were Actinobacteria (30.73%), and Acidobacteria (12.24%). Soil microbial taxa showed spatial dependence with an autocorrelation range of 44.4-883.0 m, most of them within the scope of the study plots (500 m). An increasing trend was observed for Alphaproteobacteria, Deltaproteobacteria, and Chloroflexi from north to south in the study area, but an opposite trend for Actinobacteria, Acidobacteira, and Firmicutes was observed. Thaumarchaeota, Bacteroidetes, Gemmatimonadetes, and Verrucomicrobia had patchy patterns, Nitrospirae had a unimodal pattern, and Latescibacteria had an intermittent pattern with low and high value strips. Location, soil total phosphorus, elevation, and plant density were significantly correlated with main soil bacterial taxa in the karst forest. Moreover, the total variation in soil microbial communities better explained by spatial factors than environmental variables. Furthermore, a large part of variation (76.8%) was unexplained in the study. Therefore, our results suggested that dispersal limitation was the primary driver of spatial pattern of soil microbial taxa in broadleaved forest in karst areas, and other environmental variables (i.e., soil porosity and temperature) should be taken into consideration.

Understory Plants Regulate Soil Respiration through Changes in Soil Enzyme Activity and Microbial C, N, and P Stoichiometry Following Afforestation

Soil respiration (SR) is an important process in the carbon cycle. However, the means by which changes in understory plant community traits affect this ecosystem process is still poorly understood. In this study, plant species surveys were conducted and soil samples were collected from forests dominated by black locust (Robinia pseudoacacia L.), with a chronosequence of 15, 25, and 40 years (RP15, RP25, and RP40, respectively), and farmland (FL). Understory plant coverage, evenness, diversity, and richness were determined. We investigated soil microbial biomass carbon (MBC), nitrogen (MBN), phosphorus (MBP), and stoichiometry (MBC:MBN, MBC:MBP, and MBN:MBP). Soil enzyme assays (catalase, saccharase, urease, and alkaline phosphatase), heterotrophic respiration (HR), and autotrophic respiration (AR) were measured. The results showed that plant coverage, plant richness index (R), evenness, and Shannon-Wiener diversity were higher in RP25 and RP40 than in RP15. SR, HR, and AR were significantly higher in the forested sites than in farmland, especially for SR, which was on average 360.7%, 249.6%, and 248.2% higher in RP40, RP25, and RP15, respectively. Meanwhile, catalase, saccharase, urease, and alkaline phosphatase activities and soil microbial C, N, P, and its stoichiometry were also higher after afforestation. Moreover, significant Pearson linear correlations between understory plants (coverage, evenness, diversity, and richness) and SR, HR, and AR were observed, with the strongest correlation observed between plant coverage and SR. This correlation largely depended on soil enzymes (i.e., catalase, saccharase, urease, and alkaline phosphatase), and soil microbial biomass C, N, and P contents and its stoichiometry, particularly urease activity and the MBC:MBP ratio. Therefore, we conclude that plant communities are drivers of soil respiration, and that changes in soil respiration are associated with shifts in soil enzyme activities and nutrient stoichiometry.

Effects of exotic plantation forests on soil edaphon and organic matter fractions

There is uncertainty and limited knowledge regarding soil microbial properties and organic matter fractions of natural secondary forest accompanying chemical environmental changes of replacement by pure alien plantation forests in a hilly area of southwest of Sichuan province China. The aim of this study was to evaluate the impact of natural secondary forest (NSF) to pure Cryptomeria fortunei forest (CFF) and Cunninghamia lanceolata forest (CLF) on soil organic fractions and microbial communities. The results showed that the soil total phospholipid fatty acids (PLFAs), total bacteria and fungi, microbial carbon pool, organic recalcitrant carbon (C) and (N) fractions, soil microbial quotient and labile and recalcitrant C use efficiencies in each pure plantation were significantly decreased, but their microbial N pool, labile C and N pools, soil carbon dioxide efflux, soil respiratory quotient and recalcitrant N use efficiency were increased. An RDA analysis revealed that soil total PLFAs, total bacteria and fungi and total Gram-positive and Gram-negative bacteria were significantly associated with exchangeable Al³⁺, exchangeable acid, Al³⁺, available P and Mg²⁺ and pH, which resulted into microbial functional changes of soil labile and recalcitrant substrate use efficiencies. Modified microbial C- and N-use efficiency due to forest conversion ultimately meets those of rapidly growing trees in plantation forests. Enlarged soil labile fractions and soil respiratory quotients in plantation forests would be a potential positive effect for C source in the future forest management. Altogether, pure plantation practices could provoke regulatory networks and functions of soil microbes and enzyme activities, consequently leading to differentiated utilization of soil organic matter fractions accompanying the change in environmental factors.

Effects of biochar amendment on bacterial and fungal diversity for co-composting of gelatin industry sludge mixed with organic fraction of municipal solid waste

The aim of the study was to evaluate the bacterial and fungal diversities of 18contrastivecomposts applied with 17 different sources mad biochars applied treatments using 16S rRNA and 18S rDNA technology, while T-1 used as a control. The results showed that bacterial species of the phyla Actinobacteria, Proteobacteria and Chloroflexi, and fungi of the phylum Ascomycota and Basidiomycota were pre-dominant among the all treatments. The bacterial genus Subgroup_6_norank, Nocardioides, Pseudonocardia, Sphingomonas, Solirubrobacter and RB41_norank are first time identified in composting ecosystem. In addition, the fungal genus Ascomycota_unclassified, Aspergillus, Penicillium, Pleosporales_unclassified and Herpotrichlellacease_unclassified ubiquitous among the all compost. The Shannon and refraction-curve biodiversity indices showed a clear heterogeneity among all the treatments, which could be due to isolation of new genera in this system. Finally, the principal component analysis of the relative number of sequences also confirmed that bacterial and fungal population indiscriminate in different sources mad biochar applied treatments.

Quantitative response relationships between net nitrogen transformation rates and nitrogen functional genes during artificial vegetation restoration following agricultural abandonment

A comprehensive understanding of how microbial associated with nitrogen (N) cycling respond to artificial vegetation restoration is still lacking, particularly in arid to semi-arid degraded ecosystems. We compared soil net N mineralization rates and the abundance of bacteria, archaea, and eleven N microbial genes on the northern Loess Plateau of China during the process of artificial vegetation restoration. The quantitative relationships between net N mineralization rates and N microbial genes were determined. We observed a significant difference of net transformation rates of NH₄⁺-N (R_a), NO₃^--N (R_d), and total mineralization (R_m), which rapidly decreased in 10-year soils and steadily increased in the 10-30-year soils. Different N functional microbial groups responded to artificial vegetation restoration distinctly and differentially, especially for denitrifying bacteria. Stepwise regression analysis suggested that R_a was collectively controlled by AOA-amoA and Archaea; R_d was jointly governed by narG, napA, nxrA, and bacreria; and R_m was jointly controlled by napA, narG, nirK, nirS, norB, nosZ, and nxrA.