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Polaczek J, Kieca K, Oszajca M, Impert O, Katafias A, Chatterjee D, Ćoćić D, Puchta R, Stochel G, Hubbard CD, van Eldik R. A Personal Account on Inorganic Reaction Mechanisms. CHEM REC 2023:e202300278. [PMID: 37821418 DOI: 10.1002/tcr.202300278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 09/22/2023] [Indexed: 10/13/2023]
Abstract
The presented Review is focused on the latest research in the field of inorganic chemistry performed by the van Eldik group and his collaborators. The first part of the manuscript concentrates on the interaction of nitric oxide and its derivatives with biologically important compounds. We summarized mechanistic information on the interaction between model porphyrin systems (microperoxidase) and NO as well as the recent studies on the formation of nitrosylcobalamin (CblNO). The following sections cover the characterization of the Ru(II)/Ru(III) mixed-valence ion-pair complexes, including Ru(II)/Ru(III)(edta) complexes. The last part concerns the latest mechanistic information on the DFT techniques applications. Each section presents the most important results with the mechanistic interpretations.
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Affiliation(s)
- Justyna Polaczek
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Konrad Kieca
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
- Jagiellonian University, Doctoral School of Exact and Natural Sciences, Kraków, 30-348, Krakow, Poland
| | - Maria Oszajca
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Olga Impert
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
| | - Anna Katafias
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
| | - Debabrata Chatterjee
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
- Vice-Chancellor's Research Group, Zoology Department, University of Burdwan, Burdwan, 713104, India
| | - Dušan Ćoćić
- University of Kragujevac, Faculty of Science, Department of Chemistry, Radoja Domanovića 12, P. O. Box 60, 34000, Kragujevac, Serbia
| | - Ralph Puchta
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstrasse 1, 91058, Erlangen, Germany
- Central Institute for Scientific Computing (CISC), University of Erlangen-Nuremberg, Martensstr. 5a, 91058, Erlangen, Germany
- Computer Chemistry Center, Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Nägelsbachstr. 25, 91052, Erlangen, Germany
| | - Grażyna Stochel
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Colin D Hubbard
- Department of Chemistry, University of New Hampshire, Durham, 03824, USA
| | - Rudi van Eldik
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstrasse 1, 91058, Erlangen, Germany
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
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Hubbard CD, Chatterjee D, Oszajca M, Polaczek J, Impert O, Chrzanowska M, Katafias A, Puchta R, van Eldik R. Inorganic reaction mechanisms. A personal journey. Dalton Trans 2020; 49:4599-4659. [PMID: 32162632 DOI: 10.1039/c9dt04620h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
This review covers highlights of the work performed in the van Eldik group on inorganic reaction mechanisms over the past two decades in the form of a personal journey. Topics that are covered include, from NO to HNO chemistry, peroxide activation in model porphyrin and enzymatic systems, the wonder-world of RuIII(edta) chemistry, redox chemistry of Ru(iii) complexes, Ru(ii) polypyridyl complexes and their application, relevant physicochemical properties and reaction mechanisms in ionic liquids, and mechanistic insight from computational chemistry. In each of these sections, typical examples of mechanistic studies are presented in reference to related work reported in the literature.
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Affiliation(s)
- Colin D Hubbard
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany.
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Chatterjee D, Jaiswal N, Bose K JC, Mahato RB, Bhattacharyya D. Interaction of Ru III(EDTA) with cellular thiols and O 2: biological implications thereof. J COORD CHEM 2015. [DOI: 10.1080/00958972.2015.1056172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Debabrata Chatterjee
- Chemistry & Biomimetics Group, CSIR-Central Mechanical Engineering Research Institute, Durgapur, India
| | - Namita Jaiswal
- Chemistry & Biomimetics Group, CSIR-Central Mechanical Engineering Research Institute, Durgapur, India
| | - Jagadeesh C. Bose K
- Department of Biotechnology, National Institute of Technology, Durgapur, India
| | - Ram Balak Mahato
- Department of Biotechnology, National Institute of Technology, Durgapur, India
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Wang J, Zhao X, Yan F, Wei L, Pan Q, Zhang F, Yang P. Synthesis and characterization of dinuclear (Hedta)Ru(III) complexes with N-heterocyclic ligands: magnetic properties and DNA-binding studies. J COORD CHEM 2013. [DOI: 10.1080/00958972.2013.848274] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Jiangyun Wang
- Department of Medical Chemistry, Weifang Medical University, Weifang, P.R. China
| | - Xintong Zhao
- School of Medicine, Shandong University, Jinan, P.R. China
| | - Fang Yan
- Department of Medical Chemistry, Weifang Medical University, Weifang, P.R. China
| | - Liuya Wei
- Department of Medical Chemistry, Weifang Medical University, Weifang, P.R. China
| | - Qianxiu Pan
- Department of Medical Chemistry, Weifang Medical University, Weifang, P.R. China
| | - Fenglian Zhang
- Department of Medical Chemistry, Weifang Medical University, Weifang, P.R. China
| | - Peipei Yang
- College of Chemistry and Materials Science, Huaibei Normal University, Huaibei, P.R. China
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Chatterjee D, van Eldik R. Polyaminecarboxylateruthenium(III) complexes on the mosaic of bioinorganic reactions. Kinetic and mechanistic impact. ADVANCES IN INORGANIC CHEMISTRY 2012. [DOI: 10.1016/b978-0-12-396462-5.00006-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Chatterjee D, Ghosh S, Pal U. Kinetics and mechanism of NO production in the RuIII-(edta) mediated oxidation of l-arginine with H2O2. Dalton Trans 2011; 40:683-5. [DOI: 10.1039/c0dt00650e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Chatterjee D, Pal U, Ghosh S, van Eldik R. Redox reactions of a RuIII-edta complex with thioamino acids. Kinetic and mechanistic studies. Dalton Trans 2011; 40:1302-6. [DOI: 10.1039/c0dt01444c] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Chatterjee D, Ember E, Pal U, Ghosh S, van Eldik R. Kinetics and mechanism of the [RuIII(edta)(H2O)]−-mediated oxidation of cysteine by H2O2. Dalton Trans 2011; 40:10997-1004. [DOI: 10.1039/c1dt10623f] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Chatterjee D, Pal U, Ghosh SK. Kinetics and mechanism for oxidation of [RuIII(edta)(H2O)]− with peroxydisulfate in aqueous medium. J COORD CHEM 2010. [DOI: 10.1080/00958972.2010.502570] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Debabrata Chatterjee
- a Chemistry Group, Central Mechanical Engineering Research Institute , M.G.Avenue, Durgapur – 713209, West Bengal, India
| | - Ujjwal Pal
- a Chemistry Group, Central Mechanical Engineering Research Institute , M.G.Avenue, Durgapur – 713209, West Bengal, India
| | - Sujit Kumar Ghosh
- a Chemistry Group, Central Mechanical Engineering Research Institute , M.G.Avenue, Durgapur – 713209, West Bengal, India
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Chatterjee D, Nayak KA, Ember E, van Eldik R. [RuIII(edta)(H2O)]−mediated oxidation of hydroxyurea with H2O2. Kinetic and mechanistic investigation. Dalton Trans 2010; 39:1695-8. [DOI: 10.1039/b920839a] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Moore JA, Henry Acquaye J. Crystal structures of [Ru(terpy)(HPB)(H2O)](PF6)2 and [Ru(terpy)(HPB)(2-picoline)](PF6) and the kinetics studies of the aqua ligand substitution by pyridine and substituted pyridines. Polyhedron 2009. [DOI: 10.1016/j.poly.2008.11.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Chatterjee D, Sikdar A, Patnam VR, Theodoridis A, van Eldik R. Kinetics and mechanism of O–O bond cleavage in the reaction of [RuIII(edta)(H2O)]− with hydroperoxides in aqueous solution. Dalton Trans 2008:3851-6. [DOI: 10.1039/b803181a] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Chatterjee D, Mitra A, van Eldik R. Reaction of [RuIII(edta)(H2O)]? with H2O2 in aqueous solution. Kinetic and mechanistic investigation. Dalton Trans 2007:943-8. [PMID: 17308674 DOI: 10.1039/b617119m] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reaction of [Ru(III)(edta)(H(2)O)](-) (1) (edta = ethylenediaminetetraacetate) with hydrogen peroxide was studied kinetically as a function of [H(2)O(2)], temperature (5-35 degrees C) and pressure (1-1300 atm) at a fixed pH of 5.1 using stopped-flow techniques. The reaction was found to consist of two steps involving the rapid formation of a [Ru(III)(edta)(OOH)](2-) intermediate which subsequently undergoes parallel heterolytic and homolytic cleavage to produce [(edta)Ru(V)=O](-) (45%) and [(edta)Ru(IV)(OH)](-) (55%), respectively. The water soluble trap, 2,2'-azobis(3-ethylbenzithiazoline-6-sulfonate) (ABTS), was employed to substantiate the mechanistic proposal. Reactions were carried out under pseudo-first conditions for [ABTS] >> [HOBr] >> [1], and were monitored as a function of time for the formation of the one-electron oxidation product ABTS* (+). A detailed mechanism in agreement with the rate and activation parameters is presented, and the results are discussed with reference to data reported for the corresponding [Fe(III)(edta)(H(2)O)](-)/H(2)O(2) system.
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Affiliation(s)
- Debabrata Chatterjee
- Chemistry Group, Central Mechanical Engineering Research Institute, Durgapur, 713209, India
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Gómez K, González G, Martínez M, Mendoza C, Sienra B. Absence of phosphate hydrolysis in the nucleotide substitution reaction on cis-[Co(H2O)2(cyclen)]3+ at physiological pH: Importance of hydrogen-bonding and conjugate base-catalysis. Polyhedron 2006. [DOI: 10.1016/j.poly.2006.06.041] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Han Ang W, Dyson PJ. Classical and Non‐Classical Ruthenium‐Based Anticancer Drugs: Towards Targeted Chemotherapy. Eur J Inorg Chem 2006. [DOI: 10.1002/ejic.200600723] [Citation(s) in RCA: 519] [Impact Index Per Article: 28.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Wee Han Ang
- Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Paul J. Dyson
- Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
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Chatterjee D, Sengupta A, Mitra A, Basak S, Bhattacharya R, Bhattacharyya D. Reactivity of polyaminocarboxylatoruthenium(III) complexes with serine and their protease inhibition. J COORD CHEM 2006. [DOI: 10.1080/00958970500247487] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Debabrata Chatterjee
- a Chemistry Group , Central Mechanical Engineering Research Institute , Durgapur – 713209, India
| | - Ayon Sengupta
- a Chemistry Group , Central Mechanical Engineering Research Institute , Durgapur – 713209, India
| | - Anannya Mitra
- a Chemistry Group , Central Mechanical Engineering Research Institute , Durgapur – 713209, India
| | - Susan Basak
- a Chemistry Group , Central Mechanical Engineering Research Institute , Durgapur – 713209, India
| | - Reema Bhattacharya
- b Indian Institute of Chemical Biology , Jadavpur, Kolkata – 700032, India
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Chatterjee D, Sengupta A, Mitra A, Basak S, Bhattacharya R, Bhattacharyya D. Reactivity of [RuIII(hedtra)(H2O)] with thio-amino acids and protease inhibition. Inorganica Chim Acta 2005. [DOI: 10.1016/j.ica.2004.07.047] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Reactivity of chloro(N-methyliminodiacetato)palladium(II) and chloro(pyridyl-2,6-dicarboxylato)palladium(II) complexes with purine based 5′-nucleotides and glutathione: antitumor activity of platinum(II)-analogs. Inorganica Chim Acta 2005. [DOI: 10.1016/j.ica.2004.09.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Chatterjee D, Sengupta A, Mitra A, Basak S. Reactivity of [RuIII(pac)(H2O)] (pac=polyaminocarboxylate) complexes with 5′-nucleotides and their antitumor activity. Inorganica Chim Acta 2005. [DOI: 10.1016/j.ica.2004.09.053] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Shoukry MM, Shehata MR, Hamza MSA, van Eldik R. Equilibrium, kinetic and solvent effect studies on the reactions of [RuIII(Hedta)(H2O)] with thiols. Dalton Trans 2005:3921-6. [PMID: 16311647 DOI: 10.1039/b510553f] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The interaction of [Ru(III)(edta)(H(2)O)](-) with a series of selected thiols having extra functional groups was investigated potentiometrically and kinetically. The pK(a) values of the uncoordinated carboxylic acid group and coordinated water molecule are 3.12 and 7.41, respectively, in aqueous solution at 25 degrees C and 0.1 M ionic strength. The formation constants of the complexes were determined in the pH range 3-9, and the concentration distribution of the various complex species was evaluated as a function of pH. The effect of dioxane on the pK(a) values of [Ru(III)(Hedta)(H(2)O)] and the formation constants of the corresponding thiol complexes is presented. The study also provides mechanistic information on the reaction of [Ru(III)(edta)(H(2)O)](-) with the thiols. The low values of DeltaH(not equal) and negative values of DeltaS(not equal) and DeltaV(not equal) for the substitution reactions of [Ru(III)(edta)(H(2)O)](-) clearly support the associative character of the substitution process.
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Affiliation(s)
- Mohamed M Shoukry
- Department of Chemistry, Faculty of Science, Cairo University, Giza, Egypt
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BURGESS JOHN, HUBBARD COLIND. LIGAND SUBSTITUTION REACTIONS. ADVANCES IN INORGANIC CHEMISTRY 2003. [DOI: 10.1016/s0898-8838(03)54002-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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