1
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Frateloreto F, Tavani F, Di Berto Mancini M, Del Giudice D, Capocasa G, Kieffer I, Lanzalunga O, Di Stefano S, D’Angelo P. Following a Silent Metal Ion: A Combined X-ray Absorption and Nuclear Magnetic Resonance Spectroscopic Study of the Zn 2+ Cation Dissipative Translocation between Two Different Ligands. J Phys Chem Lett 2022; 13:5522-5529. [PMID: 35695810 PMCID: PMC9234980 DOI: 10.1021/acs.jpclett.2c01468] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Accepted: 06/09/2022] [Indexed: 06/15/2023]
Abstract
The dissipative translocation of the Zn2+ ion between two prototypical coordination complexes has been investigated by combining X-ray absorption and 1H NMR spectroscopy. An integrated experimental and theoretical approach, based on state-of-the-art Multivariate Curve Resolution and DFT based theoretical analyses, is presented as a means to understand the concentration time evolution of all relevant Zn and organic species in the investigated processes, and accurately characterize the solution structures of the key metal coordination complexes. Specifically, we investigate the dissipative translocation of the Zn2+ cation from hexaaza-18-crown-6 to two terpyridine moieties and back again to hexaaza-18-crown-6 using 2-cyano-2-phenylpropanoic acid and its para-chloro derivative as fuels. Our interdisciplinary approach has been proven to be a valuable tool to shed light on reactive systems containing metal ions that are silent to other spectroscopic methods. These combined experimental approaches will enable future applications to chemical and biological systems in a predictive manner.
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Affiliation(s)
- Federico Frateloreto
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Francesco Tavani
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Marika Di Berto Mancini
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Daniele Del Giudice
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Giorgio Capocasa
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Isabelle Kieffer
- Observatoire
des Sciences de l’Univers de Grenoble (OSUG), Université Grenoble-Alpes, UMR
832 CNRS, Grenoble, Cedex 9 F-38041, France
- BM30/CRG-FAME, ESRF, Polygone scientifique, Grenoble, 38000, France
| | - Osvaldo Lanzalunga
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Stefano Di Stefano
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Paola D’Angelo
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
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2
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Del Giudice D, Tavani F, Di Berto Mancini M, Frateloreto F, Busato M, Oliveira De Souza D, Cenesi F, Lanzalunga O, Di Stefano S, D'Angelo P. Two Faces of the Same Coin: Coupling X-Ray Absorption and NMR Spectroscopies to Investigate the Exchange Reaction Between Prototypical Cu Coordination Complexes. Chemistry 2021; 28:e202103825. [PMID: 34850474 DOI: 10.1002/chem.202103825] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2021] [Indexed: 12/21/2022]
Abstract
The satisfactory rationalization of complex reactive pathways in solution chemistry may greatly benefit from the combined use of advanced experimental and theoretical complementary methods of analysis. In this work, we combine X-Ray Absorption and 1 H NMR spectroscopies with state-of-the-art Multivariate Curve Resolution and theoretical analyses to gain a comprehensive view on a prototypical reaction involving the variation of the oxidation state and local structure environment of a selected metal ion coordinated by organic ligands. Specifically, we investigate the 2-cyano-2-phenylpropanoic acid reduction of the octahedral complex established by the Cu2+ ion with terpyridine to the tetrahedral complex formed by Cu+ and neocuproine. Through our interdisciplinary approach we gain insights into the nature, concentration time evolution and structures of the key metal (XAS measurements) and organic (1 H NMR measurements) species under reaction. We believe our method may prove to be useful in the toolbox necessary to understand the mechanisms of reactive processes of interest in solution.
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Affiliation(s)
- Daniele Del Giudice
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
| | - Francesco Tavani
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
| | - Marika Di Berto Mancini
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
| | - Federico Frateloreto
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
| | - Matteo Busato
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
| | - Danilo Oliveira De Souza
- Elettra-Sincrotrone Trieste, Strada Statale 14, km 163.5 in AREA Science Park, 34149 Basovizza, Trieste, Italy
| | - Flavia Cenesi
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
| | - Osvaldo Lanzalunga
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
| | - Stefano Di Stefano
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
| | - Paola D'Angelo
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", P.le A. Moro 5, I-00185, Rome, Italy
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3
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Tavani F, Capocasa G, Martini A, Sessa F, Di Stefano S, Lanzalunga O, D'Angelo P. Direct structural and mechanistic insights into fast bimolecular chemical reactions in solution through a coupled XAS/UV–Vis multivariate statistical analysis. Dalton Trans 2021; 50:131-142. [DOI: 10.1039/d0dt03083j] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A combined multivariate and theoretical analysis of coupled XAS/UV–Vis data was proven to be an innovative method to obtain direct structural and mechanistic evidence for bimolecular reactions in solution involving organic substrates.
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Affiliation(s)
- Francesco Tavani
- Dipartimento di Chimica
- Università di Roma “La Sapienza”
- 00185 Roma
- Italy
| | - Giorgio Capocasa
- Dipartimento di Chimica
- Università di Roma “La Sapienza”
- 00185 Roma
- Italy
| | - Andrea Martini
- Dipartimento di Chimica
- Università degli Studi di Torino
- 10125 Torino
- Italy
- The Smart Materials Research Institute
| | - Francesco Sessa
- Dipartimento di Chimica
- Università di Roma “La Sapienza”
- 00185 Roma
- Italy
| | | | | | - Paola D'Angelo
- Dipartimento di Chimica
- Università di Roma “La Sapienza”
- 00185 Roma
- Italy
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4
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Tavani F, Martini A, Capocasa G, Di Stefano S, Lanzalunga O, D'Angelo P. Direct Mechanistic Evidence for a Nonheme Complex Reaction through a Multivariate XAS Analysis. Inorg Chem 2020; 59:9979-9989. [PMID: 32598841 PMCID: PMC8008396 DOI: 10.1021/acs.inorgchem.0c01132] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
![]()
In
this work, we propose a method to directly determine the mechanism
of the reaction between the nonheme complex FeII(tris(2-pyridylmethyl)amine)
([FeII(TPA)(CH3CN)2]2+) and peracetic acid (AcOOH) in CH3CN, working at room
temperature. A multivariate analysis is applied to the time-resolved
coupled energy-dispersive X-ray absorption spectroscopy (EDXAS) reaction
data, from which a set of spectral and concentration profiles for
the reaction key species is derived. These “pure” extracted
EDXAS spectra are then quantitatively characterized by full multiple
scattering (MS) calculations. As a result, structural information
for the elusive reaction intermediates [FeIII(TPA)(κ2-OOAc)]2+ and [FeIV(TPA)(O)(X)]+/2+ is obtained, and it is suggested that X = AcO– in opposition to X = CH3CN. The employed strategy is
promising both for the spectroscopic characterization of reaction
intermediates that are labile or silent to the conventional spectroscopic
techniques, as well as for the mechanistic understanding of complex
redox reactions involving organic substrates. A combined multivariate and theoretical XAS analysis was
proven to be a powerful method to obtain direct evidence for the mechanism
of the reaction between the nonheme complex FeII(tris(2-pyridymethyl)amine)
([FeII(TPA)(CH3CN)2]2+) and peroxyacetic acid. This approach allowed to determine the time
evolution of the concentration profiles for all reaction intermediates
and to quantitatively characterize their structures, suggesting the
sixth coordinating ligand of the nonheme oxo complex [FeIV(TPA)(O)(X)]+/2+ is X = AcO− in
opposition to X = CH3CN.
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Affiliation(s)
- Francesco Tavani
- Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
| | - Andrea Martini
- Dipartimento di Chimica, Università degli Studi di Torino, Via P. Giuria 7, 10125 Torino, Italy.,The Smart Materials Research Institute, Southern Federal University, Sladkova 178/24, 344090 Rostov-on-Don, Russia
| | - Giorgio Capocasa
- Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
| | - Stefano Di Stefano
- Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
| | - Osvaldo Lanzalunga
- Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
| | - Paola D'Angelo
- Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
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5
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Capocasa G, Sessa F, Tavani F, Monte M, Olivo G, Pascarelli S, Lanzalunga O, Di Stefano S, D’Angelo P. Coupled X-ray Absorption/UV–vis Monitoring of Fast Oxidation Reactions Involving a Nonheme Iron–Oxo Complex. J Am Chem Soc 2019; 141:2299-2304. [DOI: 10.1021/jacs.8b08687] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Giorgio Capocasa
- Dipartimento di Chimica, Università di Roma “La Sapienza”, P.le A. Moro 5, 00185 Roma, Italy
- Sezione Meccanismi di Reazione, Istituto CNR per i Sistemi Biologici (ISB-CNR), P.le A. Moro 5, 00185 Roma, Italy
| | - Francesco Sessa
- Dipartimento di Chimica, Università di Roma “La Sapienza”, P.le A. Moro 5, 00185 Roma, Italy
| | - Francesco Tavani
- Dipartimento di Chimica, Università di Roma “La Sapienza”, P.le A. Moro 5, 00185 Roma, Italy
| | - Manuel Monte
- European Synchrotron Radiation Facility, 71, Avenue des Martyrs, Grenoble 38000, France
| | - Giorgio Olivo
- Dipartimento di Chimica, Università di Roma “La Sapienza”, P.le A. Moro 5, 00185 Roma, Italy
| | - Sakura Pascarelli
- European Synchrotron Radiation Facility, 71, Avenue des Martyrs, Grenoble 38000, France
| | - Osvaldo Lanzalunga
- Dipartimento di Chimica, Università di Roma “La Sapienza”, P.le A. Moro 5, 00185 Roma, Italy
- Sezione Meccanismi di Reazione, Istituto CNR per i Sistemi Biologici (ISB-CNR), P.le A. Moro 5, 00185 Roma, Italy
| | - Stefano Di Stefano
- Dipartimento di Chimica, Università di Roma “La Sapienza”, P.le A. Moro 5, 00185 Roma, Italy
- Sezione Meccanismi di Reazione, Istituto CNR per i Sistemi Biologici (ISB-CNR), P.le A. Moro 5, 00185 Roma, Italy
| | - Paola D’Angelo
- Dipartimento di Chimica, Università di Roma “La Sapienza”, P.le A. Moro 5, 00185 Roma, Italy
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6
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Garino C, Borfecchia E, Gobetto R, van Bokhoven JA, Lamberti C. Determination of the electronic and structural configuration of coordination compounds by synchrotron-radiation techniques. Coord Chem Rev 2014. [DOI: 10.1016/j.ccr.2014.03.027] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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7
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Bordiga S, Groppo E, Agostini G, van Bokhoven JA, Lamberti C. Reactivity of Surface Species in Heterogeneous Catalysts Probed by In Situ X-ray Absorption Techniques. Chem Rev 2013; 113:1736-850. [DOI: 10.1021/cr2000898] [Citation(s) in RCA: 488] [Impact Index Per Article: 44.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Silvia Bordiga
- Department of Chemistry and NIS Centre of Excellence, Università di Torino and INSTM Reference Center, Via P. Giuria 7, 10125 Torino, Italy
| | - Elena Groppo
- Department of Chemistry and NIS Centre of Excellence, Università di Torino and INSTM Reference Center, Via P. Giuria 7, 10125 Torino, Italy
| | - Giovanni Agostini
- Department of Chemistry and NIS Centre of Excellence, Università di Torino and INSTM Reference Center, Via P. Giuria 7, 10125 Torino, Italy
| | - Jeroen A. van Bokhoven
- ETH Zurich, Institute for Chemical and Bioengineering, HCI E127 8093 Zurich, Switzerland
- Laboratory for Catalysis and Sustainable Chemistry (LSK) Swiss Light Source, Paul Scherrer Instituteaul Scherrer Institute, Villigen, Switzerland
| | - Carlo Lamberti
- Department of Chemistry and NIS Centre of Excellence, Università di Torino and INSTM Reference Center, Via P. Giuria 7, 10125 Torino, Italy
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8
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Nguyen BN, Adrio LA, Barreiro EM, Brazier JB, Haycock P, Hii KK(M, Nachtegaal M, Newton MA, Szlachetko J. Deconvolution of the Mechanism of Homogeneous Gold-Catalyzed Reactions. Organometallics 2012. [DOI: 10.1021/om300030e] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bao N. Nguyen
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, U.K
| | - Luis A. Adrio
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, U.K
| | - Elena M. Barreiro
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, U.K
| | - John B. Brazier
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, U.K
| | - Peter Haycock
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, U.K
| | - King Kuok (Mimi) Hii
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, U.K
| | | | - Mark A. Newton
- European Synchrotron and Radiation Facility, 6, rue Jules Horowitz, 38000
Grenoble, France
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9
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Bartlett SA, Wells PP, Nachtegaal M, Dent AJ, Cibin G, Reid G, Evans J, Tromp M. Insights in the mechanism of selective olefin oligomerisation catalysis using stopped-flow freeze-quench techniques: A Mo K-edge QEXAFS study. J Catal 2011. [DOI: 10.1016/j.jcat.2011.10.015] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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10
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11
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Pascarelli S, Mathon O. Advances in high brilliance energy dispersive X-ray absorption spectroscopy. Phys Chem Chem Phys 2010; 12:5535-46. [DOI: 10.1039/b926509k] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Panine P, Finet S, Weiss TM, Narayanan T. Probing fast kinetics in complex fluids by combined rapid mixing and small-angle X-ray scattering. Adv Colloid Interface Sci 2006; 127:9-18. [PMID: 16938267 DOI: 10.1016/j.cis.2006.06.003] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2006] [Revised: 06/12/2006] [Accepted: 06/13/2006] [Indexed: 11/30/2022]
Abstract
Stopped-flow mixing coupled to small-angle X-ray scattering (SAXS) is an established technique for investigating structural kinetics in solution down to the millisecond range. More recently, the emphasis has shifted to the sub-millisecond range using continuous flow microfluidic mixing devices. The aim of this article is to review the present status and limitations when applying mixing techniques to a wide range of soft matter and biological systems. In the case of SAXS, special consideration of the mixing quality is necessary for a quantitative description of the scattered intensity. This is demonstrated through two representative examples involving protein refolding and micellar self-assembly.
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Affiliation(s)
- P Panine
- European Synchrotron Radiation Facility, F-38043 Grenoble, France.
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13
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Abstract
Third generation synchrotron light sources provide stable, tuneable light of energy up to the hard X-ray region. The gain of a trillion in brightness as compared to a conventional laboratory X-ray source transforms the opportunities for establishing structure-function relationships. The light may be quasi-continuous or pulsed, have controllable polarisation and have coherence lengths larger than the sample size. The high brightness provides a basis for adding time and spatial resolution to X-ray scattering and spectroscopy. It may also be used to identify very specific information about the magnetic properties of atoms within materials, element specific vibrations, and local structural descriptions identified with chemical speciation. More demanding scattering and diffraction problems can be solved such as weakly scattering materials, large unit cells and structural entities. The high collimation of the source also provides enhanced spectroscopic and diffraction resolution that gives more insight into molecular, extended and supramolecular structures. The length scales can be bridged from the atomic up to that of visible light microscopy and buried features within materials can be observed with the appropriate energy. With an increased emphasis on ease of use, such capabilities are open to exploitation for chemical challenges.
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Affiliation(s)
- John Evans
- School of Chemistry, University of Southampton, Southampton, SO17 1BJ, UK.
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14
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Stack AG, Rosso KM, Smith DMA, Eggleston CM. Reaction of hydroquinone with hematite. J Colloid Interface Sci 2004; 274:442-50. [PMID: 15144815 DOI: 10.1016/j.jcis.2004.01.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2003] [Accepted: 01/07/2004] [Indexed: 10/26/2022]
Abstract
The rate of reaction of hematite with quinones and the quinone moieties of larger molecules may be an important factor in limiting the rate of reductive dissolution of hematite, especially by iron-reducing bacteria. It is possible that the rate of reductive dissolution of hematite in the presence of excess hydroquinone at pH 2.5 may be limited by the electron-transfer rate. Here, a reductive dissolution rate was measured and compared to electron-transfer rates calculated using Marcus theory. An experimental rate constant was measured at 9.5 x 10 (-6) s(-1) and the reaction order with respect to the hematite concentration was found to be 1.1. Both the dissolution rate and the reaction order of hematite concentration compare well with previous measurements. Of the Marcus theory calculations, the inner-sphere part of the reorganization energy and the electronic coupling matrix element for hydroquinone self-exchange electron transfer are calculated using ab initio methods. The second order self-exchange rate constant was calculated to be 1.3 x 10 (7) M(-1)s(-1), which compares well with experimental measurements. Using previously published data calculated for hexaquairon(III)/(II), the calculated electron-transfer rate for the cross reaction with hydroquinone also compares well to experimental measurements. A hypothetical reductive dissolution rate is calculated using the first-order electron-transfer rate constant and the concentration of total adsorbed quinone. Three different models of the hematite surface are used as well as multiple estimates for the reduction potential, the surface charge, and the adsorption density of hydroquinone. No calculated dissolution rate is less than five orders of magnitude faster than the experimentally measured one.
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Affiliation(s)
- Andrew G Stack
- Department of Geology and Geophysics, University of Wyoming, Laramie, WY 82071-3006, USA.
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15
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Stack AG, Eggleston CM, Engelhard MH. Reaction of hydroquinone with hematite. J Colloid Interface Sci 2004; 274:433-41. [PMID: 15144814 DOI: 10.1016/j.jcis.2003.12.026] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2003] [Accepted: 12/12/2003] [Indexed: 11/21/2022]
Abstract
The reaction of hematite with quinones and the quinone moieties of larger molecules may be an important factor in limiting the rate of reductive dissolution, especially by iron-reducing bacteria. Here, the electrochemical and physical properties of hydroquinone adsorbed on hematite surfaces at pH 2.5-3 were investigated with cyclic voltammetry (CV), electrochemical-scanning tunneling microscopy (EC-STM), and X-ray photoelectron spectroscopy (XPS). An oxidation peak for hydroquinone was observed in the CV experiments, as well as (photo)reduction of iron and decomposition of the solvent. The EC-STM results indicate that hydroquinone sometimes forms an ordered monolayer with approximately 1.1 QH(2)/nm(2), but can be fairly disordered (especially when viewed at larger scales). XPS results indicate that hydroquinone and benzoquinone are retained at the interface in increasing amounts as the reaction proceeds, but reduced iron is not observed. These results suggest that quinones do not adsorb by an inner-sphere complex where adsorbate-surface interactions determine the adsorbate surface structure, but rather in an outer-sphere complex where interactions among the adsorbate molecules dominate.
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Affiliation(s)
- Andrew G Stack
- Department of Geology and Geophysics, University of Wyoming, Laramie, WY 82071-3006, USA.
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