Structure controlled self-assembly of Cu(ii) salicylic aldehyde and aldimine derivative complexes

Bipyridine derivatives at a solid/liquid interface: effects of the number and length of peripheral alkyl chains

Bipyridine derivatives (bpys) with various number and length of peripheral alkyl chains (with carbon numbers of n = 11-17) were synthesized, and their self-assembled monolayers were observed by scanning tunneling microscopy (STM) at a 1-phenyloctane/highly oriented pyrolytic graphite (HOPG) interface. The effects of the number, the substitution position, and the length of alkyl chains on the two-dimensional structures were systematically studied. Bpys substituted by a single alkyl chain in the p-position on each side adopted an almost linear form with zigzag-type alignment of the pi-conjugated unit, whereas, in the case of m-substitution, the bpys showed Z-shaped morphology with interdigitated alkyl chains. In both cases, no odd-even alkyl chain length effects were observed. The bpys with double alkyl chains at m- and p-positions displayed odd-even alkyl chain effects, suggesting that the formation of two-dimensional structure is dominated by the interactions between alkyl chains. Bpys with triple alkyl chains at o-, m-, and p-positions also showed odd-even alkyl chain effects, but only for the higher number of carbon atoms in the alkyl chain unit (n = 14-17). These results indicate that concerted intermolecular interactions of the alkyl chain unit introduce the odd-even chain length effect on the self-assembled two-dimensional structure. After coordination of PdCl(2), odd-even effects were quenched, and bpys were converged into the same lamellar structure, in which the molecules are almost linear. All the structural differences due to the odd-even alkyl chain length effect were explained in terms of intermolecular and molecule-substrate interactions.

Superperiodic assembly of 2,6-diethynylpyridine through weak hydrogen bonds at the 1-phenyloctane/HOPG interface

Regardless of the absence of alkyl chains and conventional hydrogen bonding sites as well as its small size, 2,6-diethynylpyridine forms an ordered array at the interface between 1-phenyloctane and highly oriented pyrolytic graphite (HOPG) under room temperature conditions, as revealed by scanning tunneling microscopy. We propose a model for the superperiodic molecular arrangement with reference to the bulk crystal structure, in which the surface pattern is governed by weak C-H...N and C-H...pi hydrogen bonds as well as the periodic potential of the underlying graphite surface.

Odd–even effect and metal induced structural convergence in self-assembled monolayers of bipyridine derivatives

Scanning tunneling microscopy (STM) observations reveal that bipyridine derivatives which exhibit various two-dimensional structures due to the odd-even chain length effect are converged into a lamellar structure upon metal coordination.

Fine-Tuning of Relative Metal–Metal Distances within Highly Ordered Chiral 2D Nanopatterns

The two-dimensional nanopatterning of a series of neutral alkoxy/alkyl-functionalised bis(salicylaldehydato)/bis(aldiminato)copper(II) and -palladium(II) complexes at a liquid/solid (highly oriented pyrolytic graphite, HOPG) interface has been studied by scanning tunnelling microscopy (STM). The relative metal-metal distances were tuned stepwise in two dimensions by ligand design. Exchange of the carbonyl O-atom for NH or N-alkyl units effects different intermolecular interactions such as weak hydrogen bonds and steric effects that determine, together with the van der Waals forces between the alkyl chains, the relative arrangements of the complexes. Further variation of the length and position of the alkoxy side chains as well as the exchange of CuII for PdII affords an absolute fine-tuning of the surface structures. Highly resolved STM images of the resultant highly ordered adlayers allow us to establish detailed models of the molecular 2D arrays and to classify them into three basic chiral pattern types. Homochirality within the individual domains is induced by the highly regular deposition of the prochiral complexes from the same enantiotopic face. In the case of the C12 O-substituted bis(salicylaldiminato) (NH) Cu(II) complex Cu5, a secondary structure occurs as a racemic mixture of two chiral surface species deposited in a distinct alternating order.

Structural Comparison of Self-Organized Adlayers of Ligands and Their Metal-Coordinated Complexes on a Au(111) Surface: An STM Study

Scanning tunneling microscopy (STM) was employed to investigate the adsorption of the linear-spacer-bridged ligands bis(pyrrol-2-yl-methyleneamine) (BPMB and BPMmB), and their Zn(II)-coordinated complexes, BPMB/Zn(II) and BPMmB/Zn(II), onto a Au(111) surface in 0.1 M HClO(4) solution. Both the ligands, with different spacer bridges, and their Zn(II) complexes adsorb onto the Au(111) surface and self-organize into highly ordered two-dimensional arrays. The complexes BPMB/Zn(II) and BPMmB/Zn(II) appear in helical and triangular conformations, respectively, consistent with their chemical structures. Although the metal complexes include ligands, the assembled structures and adlayer symmetries of the ligands and complexes are totally different. The structures and intramolecular features obtained by high-resolution STM imaging are discussed. The results should be important in fabricating surface supramolecular structures.

Weak Hydrogen Bonds as a Structural Motif for Two-Dimensional Assemblies of Oligopyridines on Highly Oriented Pyrolytic Graphite: An STM Investigation

We present the STM investigation of four different oligopyridines at the liquid/highly oriented pyrolytic graphite interface. The heteroaromatic compounds are constitutional isomers showing the same overall shape regardless of their actual conformation. On the basis of weak intermolecular C-H...N hydrogen-bonding interactions, different nanopatterns are formed following a simple general concept for the two dimensional self-assembly. The molecules arrange either in linear or in cyclic structures. Though the oligopyridines are achiral, the formation of prochiral trimeric superstructures leads to chiral phases due to the immobilization on the surface. Some of the molecules show polymorphic structures depending on the solvent. The large variety of the presented structures formed by self-assembly of the different oligopyridines which retain the same functional heteroaromatic backbone shall open the possibility of exploiting these patterns as templates for the nanostructuring of surfaces with guests such as small molecules or metal ions for intriguing applications in, for example, catalysis.

Hydrogen bond directed synthesis of pyridazine and naphthyridine containing macrocycles

This work describes a high-yielding, one-step synthesis of pyrizadine and naphthyridine containing macrocycles directed by intramolecular H-bonding.