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Cerqueira HBA, Santos JC, Fantuzzi F, Ribeiro FDA, Rocco MLM, Oliveira RR, Rocha AB. Structure, Stability, and Spectroscopic Properties of Small Acetonitrile Cation Clusters. J Phys Chem A 2020; 124:6845-6855. [PMID: 32702984 DOI: 10.1021/acs.jpca.0c03529] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ionization and fragmentation pathways induced by ionizing agents are key to understanding the formation of complex molecules in astrophysical environments. Acetonitrile (CH3CN), the simplest organic nitrile, is an important molecule present in the interstellar medium. In this work, DFT and MP2 calculations were performed in order to obtain the low energy structures of the most relevant cations formed from electron-stimulated ion desorption of CH3CN ices. Selected reaction pathways and spectroscopic properties were also calculated. Our results indicate that the most stable acetonitrile cation structure is CH2CNH+ and that hydrogenation can occur successively without isomerization steps until its complete saturation. Moreover, the stability of distinct cluster families formed from the interaction of acetonitrile with small fragments, such as CHn+, C2Hn+, and CHnCNH+, is discussed in terms of their respective binding energies. Some of these molecular clusters are stabilized by hydrogen bonds, leading to species whose infrared features are characterized by a strong redshift of the N-H stretching mode. Finally, the rotational spectra of CH3CN and protonated acetonitrile, CH3CNH+, were simulated using distinct computational protocols based on DFT, MP2, and CCSD(T) considering centrifugal distortion, vibrational-rotational coupling, and vibrational anharmonicity corrections. By adopting an empirical scaling procedure for calculating spectroscopic parameters, we were able to estimate the rotational frequencies of CH3CNH+ with an expected average error below 1 MHz for J values up to 10.
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Affiliation(s)
- Henrique B A Cerqueira
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
| | - Julia C Santos
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
| | - Felipe Fantuzzi
- Institut für Anorganische Chemie, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany.,Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Straße 42, 97074 Würzburg, Germany
| | | | - Maria Luiza M Rocco
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
| | - Ricardo R Oliveira
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
| | - Alexandre B Rocha
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
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Kruszewski Ł, Fabiańska MJ, Ciesielczuk J, Segit T, Orłowski R, Motyliński R, Kusy D, Moszumańska I. First multi-tool exploration of a gas-condensate-pyrolysate system from the environment of burning coal mine heaps: An in situ FTIR and laboratory GC and PXRD study based on Upper Silesian materials. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 640-641:1044-1071. [PMID: 30021271 DOI: 10.1016/j.scitotenv.2018.05.319] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 05/25/2018] [Accepted: 05/25/2018] [Indexed: 06/08/2023]
Abstract
A methodological approach to the complex geochemical analysis of the coal fire in burning coal mine heaps (BCMH) of Upper Silesian Coal Basin has been developed. The other approach used is gas chromatography and indicatory tubes. Powder X-Ray Diffraction is applied for phase analysis to determine the species composition of mineral condensates present within and around gas flues. The gas compositions are proved to be extremely variable, when comparing both different BCMH and flues or flue zones of the same heaps. One outstanding determination concerns GeCl4, found in most samples often in large quantities. No evident dependence between the gas and mineral condensate compositions is found: N-rich condensates may but do not have to be associated with NH3-, pyridine-, or NOx-rich gases. This is also true for S-rich and Cl-rich mineralization in connection with gases of SO2, H2S, OCS, CS2, thiophene, dimethyl sulfide, dimethyl disulfide, HCl, and various halogenated hydrocarbons. Fluorine is rarely present as HF, whereas SiF4 occurs more frequently and in much larger quantities. AsH3 is mainly a trace gas but may locally be enriched. Besides the common gases, a number of trace gases is also determined based on residual FTIR spectra. Those with the highest presence chance include cyanogen isocyanate, cyanogen N-oxide, (iso)cyanic acid, c-cyanomethanimine (ethylenediimine), isocyanatomethane, iodocyanoacetylene, acetonitrile, acetaldehyde, m-hydroxybenzonitrile (m-cyanophenol), isonitrosyl chloride, nitrosyl isocyanide, difluorosilane, pentacene, triphenylene, thiazolidine, cyclohexane, and a trinitrenetriazine. The occurrence of some metals and semimetals (e.g., Al, Mg, Ga) as neutral hydroxides, suggested by other authors to occur in natural gases, is possibly confirmed. The presence of trace metal carbonyls, nitrosyls and hydrides is also possible.
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Affiliation(s)
- Łukasz Kruszewski
- Institute of Geological Sciences, Polish Academy of Sciences (ING PAN), 51/55 Twarda St., PL-00-818 Warsaw, Poland.
| | - Monika J Fabiańska
- Faculty of Earth Sciences, University of Silesia, 60 Będzińska St., PL-41-200 Sosnowiec, Poland
| | - Justyna Ciesielczuk
- Faculty of Earth Sciences, University of Silesia, 60 Będzińska St., PL-41-200 Sosnowiec, Poland
| | - Tomasz Segit
- Department of Geology, University of Warsaw, 93 Żwirki i Wigury St., 02-089 Warszawa, Poland
| | - Ryszard Orłowski
- Institute of Geological Sciences, Polish Academy of Sciences (ING PAN), 51/55 Twarda St., PL-00-818 Warsaw, Poland
| | - Rafał Motyliński
- Institute of Geological Sciences, Polish Academy of Sciences (ING PAN), 51/55 Twarda St., PL-00-818 Warsaw, Poland
| | - Danuta Kusy
- Institute of Geological Sciences, Polish Academy of Sciences (ING PAN), 51/55 Twarda St., PL-00-818 Warsaw, Poland
| | - Izabela Moszumańska
- Institute of Geological Sciences, Polish Academy of Sciences (ING PAN), 51/55 Twarda St., PL-00-818 Warsaw, Poland
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Cartoni A, Casavola AR, Bolognesi P, Castrovilli MC, Catone D, Chiarinelli J, Richter R, Avaldi L. Insights into 2- and 4(5)-Nitroimidazole Decomposition into Relevant Ions and Molecules Induced by VUV Ionization. J Phys Chem A 2018; 122:4031-4041. [DOI: 10.1021/acs.jpca.8b01144] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- A. Cartoni
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
- Dipartimento di Chimica, Sapienza Università di Roma, P.le Aldo Moro 5, 00185, Roma, Italy
| | - A. R. Casavola
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
| | - P. Bolognesi
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
| | - M. C. Castrovilli
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
| | - D. Catone
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 2, via del Fosso del Cavaliere 10, 00133, Roma, Italy
| | - J. Chiarinelli
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
| | - R. Richter
- Elettra Sincrotrone Trieste, Area Science
Park, 34149, Basovizza, Trieste, Italy
| | - L. Avaldi
- Istituto di Struttura della Materia (ISM), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca di Roma 1, via Salaria Km 29,300, Monterotondo Scalo (RM), 00016, Italy
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Kokkila Schumacher SIL, Bera PP, Lee TJ. Characterization of the Azirinyl Cation and Its Isomers. J Phys Chem A 2016; 120:1275-82. [PMID: 26840658 DOI: 10.1021/acs.jpca.5b12373] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The azirinyl cation (C2H2N(+)) and its geometrical isomers could be present in the interstellar medium. The C2H2N(+) isomers are, however, difficult to identify in interstellar chemistry because of the lack of high-resolution spectroscopic data from laboratory experiments. Ab initio quantum chemical methods were used to characterize the structures, relative energies, and spectroscopic and physical properties of the low energy isomers of the azirinyl cation. We have employed second-order Møller-Plesset perturbation theory (MP2), second-order Z-averaged perturbation theory (ZAPT2), and coupled cluster theory with singles and doubles with perturbative triples CCSD(T) methods along with large correlation consistent basis sets such as cc-pVTZ, cc-pCVTZ, cc-pVQZ, cc-pCVQZ, and cc-pV5Z. Harmonic vibrational frequencies, dipole moments, rotational constants, and proton affinities for the lowest energy isomers were calculated using the CCSD(T) method. Azirinyl cation, a cyclic isomer, is lowest in energy at all levels of theory employed. Azirinyl cation is followed by the cyanomethyl cation (H2CCN)(+), isocyanomethyl cation (H2CNC)(+), and a quasilinear HCCNH(+) cation, which are 13.8, 17.3, and 21.5 kcal mol(-1) above the cyclic isomer, respectively, at the CCSD(T)/cc-pV5Z level of theory. The lowest three isomers all have C2v symmetry and (1)A1 ground electronic states. The quasilinear HCCNH(+) cation has a Cs symmetry planar structure, and a (3)A″ electronic ground state, unlike what some previous work suggested.
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Affiliation(s)
- Sara I L Kokkila Schumacher
- Space Science and Astrobiology Division, NASA Ames Research Center , Mountain View, California 94035, United States
| | - Partha P Bera
- Space Science and Astrobiology Division, NASA Ames Research Center , Mountain View, California 94035, United States.,Bay Area Environmental Research Institute , Petaluma, California 94952, United States
| | - Timothy J Lee
- Space Science and Astrobiology Division, NASA Ames Research Center , Mountain View, California 94035, United States
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Nagy A, Garkusha I, Fulara J, Maier JP. Electronic spectroscopy of transient species in solid neon: the indene-motif polycyclic hydrocarbon cation family C9Hy+ (y = 7–9) and their neutrals. Phys Chem Chem Phys 2013; 15:19091-101. [DOI: 10.1039/c3cp52172a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Vigren E, Kamińska M, Hamberg M, Zhaunerchyk V, Thomas RD, Danielsson M, Semaniak J, Andersson PU, Larsson M, Geppert WD. Dissociative recombination of fully deuterated protonated acetonitrile, CD3CND+: product branching fractions, absolute cross section and thermal rate coefficient. Phys Chem Chem Phys 2008; 10:4014-9. [DOI: 10.1039/b801566j] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Andreazza HJ, Fitzgerald M, Bowie JH. The formation of the stable radicals ˙CH2CN, CH3˙CHCN and ˙CH2CH2CN from the anions−CH2CN, CH3−CHCN and−CH2CH2CN in the gas phase. A joint experimental and theoretical study. Org Biomol Chem 2006; 4:2466-72. [PMID: 16763693 DOI: 10.1039/b602621d] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Franck-Condon one-electron oxidation of the stable anions -CH2CN, CH3-CHCN and -CH2CH2CN (in the collision cell of a reverse-sector mass spectrometer) produce the radicals .CH2CN, CH3.CHCN and .CH2CH2CN, which neither rearrange nor decompose during the microsecond duration of the neutralisation-reionisation experiment. Acetonitrile (CH3CN) and propionitrile (CH3CH2CN) are known interstellar molecules and radical abstraction of these could produce energised .CH2CN and CH3.CHCN, which might react with NH2. (a known interstellar radical) on interstellar dust or ice surfaces to form NH2CH2CN and NH2CH(CH3)CN, precursors of the amino acids glycine and alanine.
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