Multiple channel dynamics in the O(1D) reaction with alkanes

Kinetics and Mechanism of the Singlet Oxygen Atom Reaction with Dimethyl Ether

We combine in situ laser spectroscopy, quantum chemistry, and kinetic calculations to study the reaction of a singlet oxygen atom with dimethyl ether. Infrared laser absorption spectroscopy and Faraday rotation spectroscopy are used for the detection and quantification of the reaction products OH, H2O, HO2, and CH2O on submillisecond time scales. Fitting temporal profiles of products with simulations using an in-house reaction mechanism allows product branching to be quantified at 30, 60, and 150 Torr. The experimentally determined product branching agrees well with master equation calculations based on electronic structure data and transition state theory. The calculations demonstrate that the dimethyl peroxide (CH3OOCH3) generated via O-insertion into the C-O bond undergoes subsequent dissociation to CH3O + CH3O through energetically favored reactions without an intrinsic barrier. This O-insertion mechanism can be important for understanding the fate of biofuels leaking into the atmosphere and for plasma-based biofuel processing technologies.

Synthesis of methanediol [CH2(OH)2]: The simplest geminal diol

Methanediol [CH₂(OH)₂] represents a pivotal atmospheric volatile organic compound and plays a fundamental role in aerosol growth. Although sought for decades, methanediol has never been identified due to the inherent dehydration tendency of two adjacent hydroxyl groups (OH) at the same carbon atom. Here, we prepare and identify methanediol via processing of low-temperature ices followed by sublimation into the gas phase. These findings open up a concept to synthesize and characterize unstable geminal diols—critical organic transients in Earth’s atmosphere. The excited state dynamics of oxygen may also lead to methanediol in methanol-rich interstellar ices in cold molecular clouds, followed by sublimation in star-forming regions and prospective detection of these reactive intermediates in the gas phase by radiotelescopes.

Geminal diols—organic molecules carrying two hydroxyl groups at the same carbon atom—have been recognized as key reactive intermediates by the physical (organic) chemistry and atmospheric science communities as fundamental transients in the aerosol cycle and in the atmospheric ozonolysis reaction sequence. Anticipating short lifetimes and their tendency to fragment to water plus the aldehyde or ketone, free geminal diols represent one of the most elusive classes of organic reactive intermediates. Here, we afford an exceptional glance into the preparation of the previously elusive methanediol [CH₂(OH)₂] transient—the simplest geminal diol—via energetic processing of low-temperature methanol–oxygen ices. Methanediol was identified in the gas phase upon sublimation via isomer-selective photoionization reflectron time-of-flight mass spectrometry combined with isotopic substitution studies. Electronic structure calculations reveal that methanediol is formed via excited state dynamics through insertion of electronically excited atomic oxygen into a carbon–hydrogen bond of the methyl group of methanol followed by stabilization in the icy matrix. The first preparation and detection of methanediol demonstrates its gas-phase stability as supported by a significant barrier hindering unimolecular decomposition to formaldehyde and water. These findings advance our perception of the fundamental chemistry and chemical bonding of geminal diols and signify their role as an efficient sink of aldehydes and ketones in atmospheric environments eventually coupling the atmospheric chemistry of geminal diols and Criegee intermediates.

Theoretical Investigations on the Possibility of Prebiotic HCN Formation via O-Addition Reactions

Until now, reactions between methane photolysis products (CH₃^•, CH₂) and active N atom or reactive NO radical are proposed as routes of HCN formation in the prebiotic Earth. Scientists think that the reducing atmosphere of primitive Earth was made of H₂, He, N₂, NO, CH₄, H₂O, CO₂, etc., and there was no molecular oxygen. However, it has been evident from experiments that the vacuum ultraviolet (VUV) photolysis of CO₂ can produce atomic oxygen. Therefore, it can be presumed that atomic oxygen was likely present in early Earth's atmosphere. Was there any impact of atomic oxygen in production of early atmospheric HCN for the emergence of life? To hunt for the answer, we have employed computational methods to study the mechanism and kinetics of CH₃NO + O(¹D) and CH₂NO^• + O(³P) addition reactions. Current study suggests that the addition of O(¹D) into nitrosomethane (CH₃NO) and the addition of O(³P) into nitrosomethylene radical (CH₂NO^•) can efficiently produce HCN through an effectively barrierless pathway. At STP, Bartis-Widom phenomenological loss rate coefficients of O(¹D) and O(³P) are obtained as 2.47 × 10^-12 and 4.67 × 10^-11 cm³ molecule^-1 s^-1, respectively. We propose that addition reactions of atomic oxygen with CH₃NO and CH₂NO^• might act as a potential source for early atmospheric HCN.

Alkane Oxidation: Methane Monooxygenases, Related Enzymes, and Their Biomimetics

Methane monooxygenases (MMOs) mediate the facile conversion of methane into methanol in methanotrophic bacteria with high efficiency under ambient conditions. Because the selective oxidation of methane is extremely challenging, there is considerable interest in understanding how these enzymes carry out this difficult chemistry. The impetus of these efforts is to learn from the microbes to develop a biomimetic catalyst to accomplish the same chemical transformation. Here, we review the progress made over the past two to three decades toward delineating the structures and functions of the catalytic sites in two MMOs: soluble methane monooxygenase (sMMO) and particulate methane monooxygenase (pMMO). sMMO is a water-soluble three-component protein complex consisting of a hydroxylase with a nonheme diiron catalytic site; pMMO is a membrane-bound metalloenzyme with a unique tricopper cluster as the site of hydroxylation. The metal cluster in each of these MMOs harnesses O₂ to functionalize the C-H bond using different chemistry. We highlight some of the common basic principles that they share. Finally, the development of functional models of the catalytic sites of MMOs is described. These efforts have culminated in the first successful biomimetic catalyst capable of efficient methane oxidation without overoxidation at room temperature.

Crossed beam polyatomic reaction dynamics: recent advances and new insights

This review summarizes the developments in polyatomic reaction dynamics, focusing on reactions of unsaturated hydrocarbons with O-atoms and methane with atoms/radicals.

Reaction dynamics of O(¹D) + HCOOD/DCOOH investigated with time-resolved Fourier-transform infrared emission spectroscopy

We investigated the reaction dynamics of O((1)D) towards hydrogen atoms of two types in HCOOH. The reaction was initiated on irradiation of a flowing mixture of O3 and HCOOD or DCOOH at 248 nm. The relative vibration-rotational populations of OH and OD (1 ≦ v ≦ 4, J ≤ 15) states were determined from time-resolved IR emission recorded with a step-scan Fourier-transform spectrometer. In the reaction of O((1)D) + HCOOD, the rotational distribution of product OH is nearly Boltzmann, whereas that of OD is bimodal. The product ratio [OH]/[OD] is 0.16 ± 0.05. In the reaction of O((1)D) + DCOOH, the rotational distribution of product OH is bimodal, but the observed OD lines are too weak to provide reliable intensities. The three observed OH/OD channels agree with three major channels of production predicted with quantum-chemical calculations. In the case of O((1)D) + HCOOD, two intermediates HOC(O)OD and HC(O)OOD are produced in the initial C-H and O-D insertion, respectively. The former undergoes further decomposition of the newly formed OH or the original OD, whereas the latter produces OD via direct decomposition. Decomposition of HOC(O)OD produced OH and OD with similar vibrational excitation, indicating efficient intramolecular vibrational relaxation, IVR. Decomposition of HC(O)OOD produced OD with greater rotational excitation. The predicted [OH]/[OD] ratio is 0.20 for O((1)D) + HCOOD and 4.08 for O((1)D) + DCOOH; the former agrees satisfactorily with experiments. We also observed the v3 emission from the product CO2. This emission band is deconvoluted into two components corresponding to internal energies E = 317 and 96 kJ mol(-1) of CO2, predicted to be produced via direct dehydration of HOC(O)OH and secondary decomposition of HC(O)O that was produced via decomposition of HC(O)OOH, respectively.

A global full-dimensional potential energy surface and quasiclassical trajectory study of the O(1D) + CH4 multichannel reaction

The QCT calculations based on an accurate global full-dimensional PES are capable of reproducing the experimental dynamic features for O(¹D) + CH₄.

Trapped Abstraction in the O((1)D) + CHD3 → OH + CD3 Reaction

Despite significant progress made in past decades, it is still challenging to elucidate dynamics mechanisms for polyatomic reactions, in particular, involving complex formation. The reaction of O((1)D) with methane has long been regarded as a prototypical polyatomic system of direct insertion reaction in which the O((1)D) atom can insert into the C-H bond of methane to form a "hot" methanol intermediate before decomposition. Here, we report a combined theoretical and experimental study on the O((1)D) + CHD3 reaction, on which good agreement between theory and experiment is achieved. Our study revealed that this complex-forming reaction actually proceeds via a trapped abstraction mechanism, rather than an insertion mechanism as has long been thought. We anticipate that this reaction mechanism should also be responsible for the reaction of O((1)D) with ethane and propane, as well as many other chemical reactions with deep wells in the interaction region.

Imaging the O((1)D) + CD4 → OD + CD3 Reaction Dynamics: The Threshold of Abstraction Pathway

The O((1)D) + CD4 → OD + CD3 reaction was investigated using the crossed molecular beam technique with sliced velocity map imaging at four different collision energies: 1.6, 2.8, 4.6, and 6.8 kcal/mol. The vibrational ground state product CD3 was detected using a (2 + 1) resonance-enhanced multiphoton ionization (REMPI). Remarkably different features were found in the forward and backward scatterings, and gradually changed with the collision energy. These features were attributed to two distinctive reaction mechanisms-insertion and abstraction-that occur on the ground and excited state surfaces, respectively. Contributions from the two mechanisms were extracted from the experiment results, and a positive correlation was found between the abstraction proportion and the collision energy. The threshold for the abstraction pathway was determined and compared with results from calculations.

Dynamics of reactions between two closed-shell molecules

The crossed molecular beam technique has been utilized to investigate a large number of elementary reactions. However, most of the studied reactions involve atoms or radicals; reactions between two stable molecular reactants are, in fact, seldom studied with the crossed molecular beam method. In this perspective, reactions between two stable molecules are reviewed and discussed. With crossed molecular beams and vacuum UV photoionization, the nascent products have been unambiguously identified. Consistent pictures of the reaction paths have been constructed based on the experimental data and ab initio calculations. Furthermore, there are intriguing features about the reaction barriers. The F(2) + organosulfur reactions are barrierless, demonstrating the first examples of such interactions between two closed-shell reactants. The barrier of F(2) + alkene reaction decreases with more methyl substitution groups at the C=C double bond, yet the absolute barrier heights from experiment and theory disagree with each other by ~2 kcal mol(-1), leaving an issue to be resolved in the future.

Probing the dynamics of polyatomic multichannel elementary reactions by crossed molecular beam experiments with soft electron-ionization mass spectrometric detection

In this Perspective we highlight developments in the field of chemical reaction dynamics. Focus is on the advances recently made in the investigation of the dynamics of elementary multichannel radical-molecule and radical-radical reactions, as they have become possible using an improved crossed molecular beam scattering apparatus with universal electron-ionization mass spectrometric detection and time-of-flight analysis. These improvements consist in the implementation of (a) soft ionization detection by tunable low-energy electrons which has permitted us to reduce interfering signals originating from dissociative ionization processes, usually representing a major complication, (b) different beam crossing-angle set-ups which have permitted us to extend the range of collision energies over which a reaction can be studied, from very low (a few kJ mol(-1), as of interest in astrochemistry or planetary atmospheric chemistry) to quite high energies (several tens of kJ mol(-1), as of interest in high temperature combustion systems), and (c) continuous supersonic sources for producing a wide variety of atomic and molecular radical reactant beams. Exploiting these new features it has become possible to tackle the dynamics of a variety of polyatomic multichannel reactions, such as those occurring in many environments ranging from combustion and plasmas to terrestrial/planetary atmospheres and interstellar clouds. By measuring product angular and velocity distributions, after having suppressed or mitigated, when needed, the problem of dissociative ionization of interfering species (reactants, products, background gases) by soft ionization detection, essentially all primary reaction products can be identified, the dynamics of each reaction channel characterized, and the branching ratios determined as a function of collision energy. In general this information, besides being of fundamental relevance, is required for a predictive description of the chemistry of these environments via computer models. Examples are taken from recent on-going work (partly published) on the reactions of atomic oxygen with acetylene, ethylene and allyl radical, of great importance in combustion. A reaction of relevance in interstellar chemistry, as that of atomic carbon with acetylene, is also discussed briefly. Comparison with theoretical results is made wherever possible, both at the level of electronic structure calculations of the potential energy surfaces and dynamical computations. Recent complementary CMB work as well as kinetic work exploiting soft photo-ionization with synchrotron radiation are noted. The examples illustrated in this article demonstrate that the type of dynamical results now obtainable on polyatomic multichannel radical-molecule and radical-radical reactions might well complement reaction kinetics experiments and hence contribute to bridging the gap between microscopic reaction dynamics and thermal reaction kinetics, enhancing significantly our basic knowledge of chemical reactivity and understanding of the elementary reactions which occur in real-world environments.

Dynamics of reactions O((1)D)+C(6)H(6) and C(6)D(6)

The reaction between O((1)D) and C(6)H(6) (or C(6)D(6)) was investigated with crossed-molecular-beam reactive scattering and time-resolved Fourier-transform infrared spectroscopy. From the crossed-molecular-beam experiments, four product channels were identified. The major channel is the formation of three fragments CO+C(5)H(5)+H; the channels for formation of C(5)H(6)+CO and C(6)H(5)O+H from O((1)D)+C(6)H(6) and OD+C(6)D(5) from O((1)D)+C(6)D(6) are minor. The angular distributions for the formation of CO and H indicate a mechanism involving a long-lived collision complex. Rotationally resolved infrared emission spectra of CO (1<or=upsilon<or=6) and OH (1<or=upsilon<or=3) were recorded with a step-scan Fourier-transform spectrometer. At the earliest applicable period (0-5 mus), CO shows a rotational distribution corresponding to a temperature of approximately 1480 K for upsilon=1 and 920-700 K for upsilon=2-6, indicating possible involvement of two reaction channels; the vibrational distribution of CO corresponds to a temperature of approximately 5800 K. OH shows a rotational distribution corresponding to a temperature of approximately 650 K for upsilon=1-3 and a vibrational temperature of approximately 4830 K. The branching ratio of [CO]/[OH]=2.1+/-0.4 for O((1)D)+C(6)H(6) and [CO]/[OD]>2.9 for O((1)D)+C(6)D(6) is consistent with the expectation for an abstraction reaction. The mechanism of the reaction may be understood from considering the energetics of the intermediate species and transition states calculated at the G2M(CC5) level of theory for the O((1)D)+C(6)H(6) reaction. The experimentally observed branching ratios and deuterium isotope effect are consistent with those predicted from calculations.

State-to-State Dynamics of Elementary Bimolecular Reactions

The study of state-to-state dynamics of elementary bimolecular reactions has provided remarkable insights into chemical reactivity at the most fundamental level. This review covers exciting developments in this important field in the past decade. I focus on recent studies of quantum-state-resolved molecular-beam reactive-scattering studies of elementary chemical reactions, from triatomic to polyatomic systems. Researchers have made great advances in the fundamental understanding of many elementary chemical reactions through state-to-state dynamics studies. The strong interaction between theory and experiment has significantly enhanced our understanding of the dynamics of these reactions. I hope this review provides a glimpse of this exciting research field to both experts and beginners.

Crossed beam studies of radical–radical reactions: O(3P) + C3H5(allyl)

The dynamics of the radical-radical reaction O((3)P) + C(3)H(5) has been investigated by means of the crossed molecular beam technique with mass spectrometric detection at a collision energy of 73.0 kJ mol(-1); the reaction mechanism of the H-displacement channel has been elucidated, while experimental evidence of the occurrence of one or more C-C bond-breaking channels at this collision energy has been obtained.

Recent advances in crossed-beam studies of bimolecular reactions

A critical overview of the recent progress in crossed-beam reactive scattering is presented. This review is not intended to be an exhaustive nor a comprehensive one, but rather a critical assessment of what we have been learning about bimolecular reaction dynamics using crossed molecular beams since year 2000. Particular emphasis is placed on the information content encoded in the product angular distribution-the trait of a typical molecular beam scattering experiment-and how the information can help in answering fundamental questions about chemical reactivity. We will start with simple reactions by highlighting a few benchmark three-atom reactions, and then move on progressively to the more complex chemical systems and with more sophisticated types of measurements. Understanding what cause the experimental observations is more than computationally simulating the results. The give and take between experiment and theory in unraveling the physical picture of the underlying dynamics is illustrated throughout this review.