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Kowaguchi A, Brumby PE, Yasuoka K. Hysteresis Elimination for an Anisotropic Liquid-Crystal Model via Molecule Design and Replica-Exchange Optimization. J Chem Inf Model 2024; 64:4673-4686. [PMID: 38528664 DOI: 10.1021/acs.jcim.4c00078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
The phenomenon of hysteresis in simulations, in which a system's current state is correlated to previous states and inhibits the transition to a more stable phase, may often lead to misleading results in physical chemistry. In this study, in addition to the replica exchange method (REM), a novel approach was taken by combining an evolution strategy based on the evolutionary principles of nature to predict phase transitions for the Hess-Su liquid-crystal model. In this model, an anisotropy term is added to the simple 6-12 Lennard-Jones model to intuitively reproduce the behavior of liquid crystals. We first applied the pressure-temperature REM to the Hess-Su model and optimized the replica spacing for the energy distribution to gain the maximum advantage from the REM. We then used the same approach as for the Hamiltonian REM, seeking to optimize the replica spacing in the same way. Based on both results, we attempted to predict this coarse-grained liquid-crystal model's exact phase transition point. In the Hamiltonian REM, replicas were prepared with different molecular aspect ratios corresponding to the values of the anisotropy terms in the potential function. The Hess-Su liquid-crystal model, which undergoes a direct transition from the nematic to the solid phase without going through a smectic phase, is a challenging research target for understanding phase transitions. Despite the tremendous computational difficulty in overcoming the strong hysteresis present in this system, our method could predict the phase transition point clearly and significantly reduce the extent of hysteresis. Our approach is beneficial when simulating more complex systems and, above all, shows great potential for more accurate and efficient phase transition predictions in the field of molecular simulation in the future.
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Affiliation(s)
- Akie Kowaguchi
- Department of Mechanical Engineering, Keio University, Yokohama 223-8522, Japan
| | - Paul E Brumby
- Department of Mechanical Engineering, Keio University, Yokohama 223-8522, Japan
| | - Kenji Yasuoka
- Department of Mechanical Engineering, Keio University, Yokohama 223-8522, Japan
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Ilnytskyi JM, Slyusarchuk A, Sokołowski S. Gelation of patchy ligand shell nanoparticles decorated by liquid-crystalline ligands: computer simulation study. SOFT MATTER 2018; 14:3799-3810. [PMID: 29717735 DOI: 10.1039/c8sm00356d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We consider the coarse-grained modelling of patchy ligand shell nanoparticles with liquid crystalline ligands. The cases of two, three, four and six symmetrically arranged patches of ligands are discussed, as well as the cases of their equatorial and icosahedral arrangement. A solution of decorated nanoparticles is considered within a slit-like pore with solid walls and the interior filled by a polar solvent. The ligands form physical cross-links between the nanoparticles due to strong liquid crystalline interaction, turning the solution into a gel-like structure. Gelation is carried out repeatedly starting each time from a freshly equilibrated dispersed state of nanoparticles. The gelation dynamics and the range of network characteristics of the gel are examined, depending on the type of patchy decoration and on the solution density. Emphasis is given to the theoretical prediction of the type of decoration and the solution density most suitable for producing a uniformly cross-linked and highly elastic gel structure.
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Affiliation(s)
- Jaroslav M Ilnytskyi
- Institute for Condensed Matter Physics of the National Academy of Sciences of Ukraine, 1, Svientsitskii Str., 79011 Lviv, Ukraine.
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Ilnytskyi JM, Slyusarchuk A, Saphiannikova M. Photocontrollable Self-Assembly of Azobenzene-Decorated Nanoparticles in Bulk: Computer Simulation Study. Macromolecules 2016. [DOI: 10.1021/acs.macromol.6b01871] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jaroslav M. Ilnytskyi
- Institute
for Condensed Matter Physics, National Academy of Sciences of Ukraine, Lviv, Ukraine
- National University
Lviv Politechnic, Lviv, Ukraine
- Leibniz Institute
of Polymer Research, Dresden, Germany
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Workineh ZG, Vanakaras AG. Homogeneous alignment of liquid crystalline dendrimers confined in a slit-pore. A simulation study. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2016; 28:115002. [PMID: 26903080 DOI: 10.1088/0953-8984/28/11/115002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
In this work we present results from isobaric-isothermal (NPT) Monte Carlo simulation studies of model liquid crystalline dendrimer (LCDr) systems confined in a slit-pore made of two parallel flat walls. The dendrimers are modelled as a collection of spherical and ellipsoidal particles corresponding to the junction points of the dendritic core and to the mesogenic units respectively. Assuming planar uniform (unidirectional) soft anchoring of the mesogenic units on the substrates we investigate the conformational and alignment properties of the LCDr system at different thermodynamic state points. Tractable coarse grained force fields have been used from our previous work. At low pressures the interior of the pore is almost empty, since almost all LCDrs are anchored to the substrates forming two-dimensional smectic-like structures with the mesogens aligned along the aligning direction of the substrates. As the pressure grows the LCDrs occupy the whole pore. However, even at low temperatures, the smectic organization does not transmit in the interior of the pore and is preserved for distances of 2-3 mesogenic diameters from the walls. For this reason, the global orientational order decreases with increasing pressure (density). In the vicinity (2-3 mesogenic diameters) of the pore walls, mesogenic units preserve the smectic structure whose layers are separated by layers of spherical beads. In this region individual LCDrs possess a rod like shape.
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Affiliation(s)
- Zerihun G Workineh
- Department of Materials Science and Engineering, Bahir Dar University, Bahir Dar, Ethiopia
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Markelov DA, Polotsky AA, Birshtein TM. Formation of a "Hollow" Interior in the Fourth-Generation Dendrimer with Attached Oligomeric Terminal Segments. J Phys Chem B 2014; 118:14961-71. [PMID: 25438194 DOI: 10.1021/jp509151w] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
By using the Scheutjens-Fleer self-consistent field approach, the structure of the fourth-generation dendrimer with attached terminal chemically different oligomeric segments is studied theoretically. It is demonstrated that an incompatibility of terminal segments with inner dendrimer units leads to formation of a "hollow" core with reduced polymer density in the dendrimer center. This effect is enhanced with a deterioration in the solvent quality for terminal segments. This observation is in accordance with experimental results and molecular dynamics simulation data for an analogous system. It is established that the main factor determining the hollow core formation is the segregation between inner and terminal units because the main driving force for the effect is the localization of the terminal segments at the dendrimer periphery. The influence of structural parameters of dendrimer such as the number of generations and length of the terminal chain on this effect is also studied.
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Affiliation(s)
- Denis A Markelov
- Faculty of Physics, St. Petersburg State University , Ulyanovskaya Street 1, Petrodvorets, St. Petersburg 198504, Russia.,St. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University) , Kronverkskiy Prospect 49, St. Petersburg 197101, Russia
| | - Alexey A Polotsky
- St. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University) , Kronverkskiy Prospect 49, St. Petersburg 197101, Russia.,Institute of Macromolecular Compounds, Russian Academy of Sciences , Bolshoi Prospect 31, V.O., St. Petersburg 199004, Russia
| | - Tatiana M Birshtein
- Faculty of Physics, St. Petersburg State University , Ulyanovskaya Street 1, Petrodvorets, St. Petersburg 198504, Russia.,Institute of Macromolecular Compounds, Russian Academy of Sciences , Bolshoi Prospect 31, V.O., St. Petersburg 199004, Russia
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Ilnytskyi JM, Trokhymchuk A, Schoen M. Topological defects around a spherical nanoparticle in nematic liquid crystal: Coarse-grained molecular dynamics simulations. J Chem Phys 2014; 141:114903. [DOI: 10.1063/1.4894438] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Affiliation(s)
- Jaroslav M. Ilnytskyi
- Institute for Condensed Matter Physics of the National Academy of Sciences of Ukraine, 1, Svientsitskii Str., 79011 Lviv, Ukraine
| | - Andrij Trokhymchuk
- Institute for Condensed Matter Physics of the National Academy of Sciences of Ukraine, 1, Svientsitskii Str., 79011 Lviv, Ukraine
| | - Martin Schoen
- Stranski-Laboratorium für Physikalische und Theoretische Chemie, Fakultät für Mathematik und Naturwissenschaften, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany and Department of Chemical and Biomolecular Engineering, Engineering Building I, Box 7905, North Carolina State University, 911 Partners Way, Raleigh, North Carolina 27695, USA
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Ostrovskii BI, Sulyanov SN, Boiko NA, Shibaev VP, Astaf'ev SB, Yanusova LG, de Jeu WH. Order and frustration in liquid-crystalline dendrimers. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2013; 36:134. [PMID: 24287687 DOI: 10.1140/epje/i2013-13134-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2013] [Accepted: 10/28/2013] [Indexed: 06/02/2023]
Abstract
X-ray diffraction has been used to elucidate the structure and phase behavior of several liquid-crystalline dendrimers with a different surface topology of the terminal chains. This includes second-generation liquid-crystalline block and statistical dendrimers with mixed aliphatic and mesogenic terminal groups as well as homo-dendrimers of several generations containing only mesogenic end groups. The homo-dendrimers of generation one to four display a monolayer smectic phase, while the fifth generation shows a more ordered columnar phase. The block-dendrimer of the second generation has a bilayer smectic phase. The precise structure of the lamellar ordering has been determined by X-ray reflectivity from thin films on a substrate. The second-generation statistical dendrimer does not show any mesogenic phase. The observed phase behavior is discussed in terms of the frustration due to competition between the stiff geometry of the dendritic matrix and the close-packing conditions of the terminal chains.
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Affiliation(s)
- B I Ostrovskii
- Institute of Crystallography Academy of Sciences of Russia, Leninsky pr. 59, 119333, Moscow, Russia,
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Markelov DA, Mazo MA, Balabaev NK, Gotlib YY. Temperature dependence of the structure of a carbosilane dendrimer with terminal cyanobiphenyl groups: Molecular-dynamics simulation. POLYMER SCIENCE SERIES A 2013. [DOI: 10.1134/s0965545x13010045] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Hall K, Ashtari M, Cann NM. On simulations of complex interfaces: Molecular dynamics simulations of stationary phases. J Chem Phys 2012; 136:114705. [DOI: 10.1063/1.3693516] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
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Lintuvuori JS, Wilson MR. A coarse-grained simulation study of mesophase formation in a series of rod–coil multiblock copolymers. Phys Chem Chem Phys 2009; 11:2116-25. [DOI: 10.1039/b818616b] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Slim HA, Wilson MR. Toward Large Scale Parallelization for Molecular Dynamics of Small Chemical Systems: A Combined Parallel Tempering and Domain Decomposition Approach. J Chem Theory Comput 2008; 4:1570-5. [DOI: 10.1021/ct800255r] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Henk A. Slim
- Department of Chemistry, University of Durham, South Road, Durham, DH1 3LE, U.K
| | - Mark R. Wilson
- Department of Chemistry, University of Durham, South Road, Durham, DH1 3LE, U.K
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Peroukidis SD, Vanakaras AG, Photinos DJ. Molecular Modeling of Liquid Crystalline Self-Organization of Fullerodendrimers: Columnar to Lamellar Phase Transitions Driven by Temperature and/or Concentration Changes. J Phys Chem B 2008; 112:12761-7. [DOI: 10.1021/jp805214r] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | | | - Demetri J. Photinos
- Department of Materials Science, University of Patras, 265 04 Patras, Greece
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Lintuvuori JS, Wilson MR. A new anisotropic soft-core model for the simulation of liquid crystal mesophases. J Chem Phys 2008; 128:044906. [PMID: 18247999 DOI: 10.1063/1.2825292] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A new anisotropic soft-core model is presented, which is suitable for the rapid simulation of liquid crystal mesophases. The potential is based on a soft spherocylinder, which can be easily tuned to favor different liquid crystal mesophases. The soft-core nature of the potential makes it suitable for long-time step molecular dynamics or dissipative particle dynamics simulations, particularly as a reference model for mesogens or as an anisotropic solvent for use in combination with atomistic models. Results are presented for two variants of the new potential, which show different mesophase behaviors. Variants of the potential can also be linked together to produce more complicated molecular structures. Here, as an example, results are provided for a model multipedal liquid crystal, which has eight liquid crystalline groups linked to a central core via semiflexible chains. Here, despite the complexity of molecular structure, the model succeeds in showing the spontaneous formation of a liquid crystal phase. The results also demonstrate that there is a very strong coupling between the internal structure of the multipedal mesogen and the molecular order of the phase, with the mesogen spontaneously undergoing major structural rearrangement at the transition to the liquid crystal phase.
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Affiliation(s)
- Juho S Lintuvuori
- Department of Chemistry, University Science Laboratories, South Road, Durham DH1 3LE, United Kingdom
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Application and New Developments in Polymer-Dispersed Liquid Crystal Simulation Studies. MACROMOL THEOR SIMUL 2007. [DOI: 10.1002/mats.200700008] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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