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Boruah A, Roy A. Advances in hybrid peptide-based self-assembly systems and their applications. Biomater Sci 2022; 10:4694-4723. [PMID: 35899853 DOI: 10.1039/d2bm00775d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Self-assembly of peptides demonstrates a great potential for designing highly ordered, finely tailored supramolecular arrangements enriched with high specificity, improved efficacy and biological activity. Along with natural peptides, hybrid peptide systems composed of natural and chemically diverse unnatural amino acids have been used in various fields, including drug delivery, wound healing, potent inhibition of diseases, and prevention of biomaterial related diseases to name a few. In this review, we provide a brief outline of various methods that have been utilized for obtaining fascinating structures that create an avenue to reproduce a range of functions resulting from these folds. An overview of different self-assembled structures as well as their applications will also be provided. We believe that this review is very relevant to the current scenario and will cover conformations of hybrid peptides and resulting self-assemblies from the late 20th century through 2022. This review aims to be a comprehensive and reliable account of the hybrid peptide-based self-assembly owing to its enormous influence in understanding and mimicking biological processes.
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Affiliation(s)
- Alpana Boruah
- Applied Organic Chemistry Group, Chemical Sciences and Technology Division, Council of Scientific and Industrial Research-North East Institute of Science and Technology (CSIR-NEIST), Pulibor, Jorhat-785006, Assam, India. .,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India
| | - Arup Roy
- Applied Organic Chemistry Group, Chemical Sciences and Technology Division, Council of Scientific and Industrial Research-North East Institute of Science and Technology (CSIR-NEIST), Pulibor, Jorhat-785006, Assam, India. .,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India
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Zheng LW, Xuan HZ, Liu YR, Zhao BX, Liu JT, Miao JY. Facile Synthesis, Single-Crystal Structure, and Biological Evaluation of Novel Pyrazolo[5,1-d][1,2,5]triazepin-4-ones. Helv Chim Acta 2012. [DOI: 10.1002/hlca.201100249] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Omori K, Kikkawa Y, Kanesato M, Hiratani K. Noncyclic Isobutenyl Compounds with Esters and Amides: Effect of Intramolecular Hydrogen Bonds Tuned by Tandem Claisen Rearrangement on the Two-dimensional Structures. CHEM LETT 2010. [DOI: 10.1246/cl.2010.1039] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Ejsmont K, Boeglin J, Didierjean C, Guichard G, Jelsch C. 5-(3,4-Dimethoxybenzyl)-7-isopropyl-1,3,5-triazepane-2,6-dione acetonitrile solvate refined using a multipolar atom model. Acta Crystallogr C 2010; 66:o292-4. [PMID: 20522948 DOI: 10.1107/s0108270110016331] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2010] [Accepted: 05/04/2010] [Indexed: 11/10/2022] Open
Abstract
The crystal structure of the title compound, C(16)H(23)N(3)O(4).CH(3)CN, was refined using a multipolar atom model transferred from an experimental electron-density database. The refinement showed some improvement in crystallographic statistical indices compared with the independent atom model. The triazepane ring adopts a twist-boat conformation. In the crystal structure, the molecule forms intermolecular contacts with 14 different neighbours. There are two N-H...O and one C-H...O intermolecular hydrogen bond.
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Affiliation(s)
- Krzysztof Ejsmont
- Faculty of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
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Hou GG, Ma JP, Wang L, Wang P, Dong YB, Huang RQ. Co-crystallization of oxadiazole-bridged pyridyl-N-oxide building modules with R-aromatics (R = –OH, –NH2 and –COOH). CrystEngComm 2010. [DOI: 10.1039/b923810g] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Isare B, Linares M, Lazzaroni R, Bouteiller L. Engineering the Cavity of Self-Assembled Dynamic Nanotubes. J Phys Chem B 2009; 113:3360-4. [DOI: 10.1021/jp810236z] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Benjamin Isare
- UPMC Univ Paris 06 and CNRS, UMR 7610, Chimie des Polymères, F-75005 Paris, France, and Service de Chimie des Matériaux Nouveaux, Université de Mons-Hainaut/Materia Nova, Place du Parc, 20, B-7000 Mons, Belgium
| | - Mathieu Linares
- UPMC Univ Paris 06 and CNRS, UMR 7610, Chimie des Polymères, F-75005 Paris, France, and Service de Chimie des Matériaux Nouveaux, Université de Mons-Hainaut/Materia Nova, Place du Parc, 20, B-7000 Mons, Belgium
| | - Roberto Lazzaroni
- UPMC Univ Paris 06 and CNRS, UMR 7610, Chimie des Polymères, F-75005 Paris, France, and Service de Chimie des Matériaux Nouveaux, Université de Mons-Hainaut/Materia Nova, Place du Parc, 20, B-7000 Mons, Belgium
| | - Laurent Bouteiller
- UPMC Univ Paris 06 and CNRS, UMR 7610, Chimie des Polymères, F-75005 Paris, France, and Service de Chimie des Matériaux Nouveaux, Université de Mons-Hainaut/Materia Nova, Place du Parc, 20, B-7000 Mons, Belgium
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1,3,5-Triazepan-2,6-diones as conformationally constrained dipeptide mimetics. In silico guided identification of sPLA2 inhibitors. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2009; 611:201-2. [PMID: 19400159 DOI: 10.1007/978-0-387-73657-0_92] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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Ávalos M, Babiano R, Cintas P, Gómez-Carretero A, Jiménez J, Lozano M, Ortiz A, Palacios J, Pinazo A. A Family of Hydrogels Based on Ureido-Linked Aminopolyol-Derived Amphiphiles and Bolaamphiphiles: Synthesis, Gelation under Thermal and Sonochemical Stimuli, and Mesomorphic Characterization. Chemistry 2008; 14:5656-69. [DOI: 10.1002/chem.200701897] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Fischer L, Semetey V, Lozano JM, Schaffner AP, Briand JP, Didierjean C, Guichard G. Succinimidyl Carbamate Derivatives fromN-Protected α-Amino Acids and Dipeptides―Synthesis of Ureidopeptides and Oligourea/Peptide Hybrids. European J Org Chem 2007. [DOI: 10.1002/ejoc.200601010] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Lena G, Lallemand E, Gruner AC, Boeglin J, Roussel S, Schaffner AP, Aubry A, Franetich JF, Mazier D, Landau I, Briand JP, Didierjean C, Rénia L, Guichard G. 1,3,5-Triazepan-2,6-diones as Structurally Diverse and Conformationally Constrained Dipeptide Mimetics: Identification of Malaria Liver Stage Inhibitors from a Small Pilot Library. Chemistry 2006; 12:8498-512. [PMID: 16927352 DOI: 10.1002/chem.200600560] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The development of the 1,3,5-triazepane-2,6-dione system as a novel, conformationally restricted, and readily accessible class of dipeptidomimetics is reported. The synthesis of the densely functionalized 1,3,5-triazepane-2,6-dione skeleton was achieved in only four steps from a variety of simple linear dipeptide precursors. To extend the practical value of 1,3,5-triazepane-2,6-diones, a general polymer-assisted solution-phase synthesis approach amenable to library production in a multiparallel format was developed. The conformational preferences of the 1,3,5-triazepane-2,6-dione skeleton were investigated in detail by NMR spectroscopy and X-ray diffraction. The ring exhibits a characteristic folded conformation which was compared to that of related dipeptide-derived scaffolds including the more planar 2,5-diketopiperazine (DKP). Molecular and structural diversity was increased further through post-cyclization appending operations at urea nitrogens. Preliminary biological screens of a small collection of 1,3,5-triazepane-2,6-diones revealed inhibitors of the underexplored malaria liver stage and suggest strong potential for this dipeptide-derived scaffold to interfere with and to modulate biological pathways.
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Affiliation(s)
- Gersande Lena
- Immunologie et Chimie Thérapeutiques (ICT), UPR CNRS 9021, Institut de Biologie Moléculaire et Cellulaire, 15 rue Descartes, 67084 Strasbourg, France
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