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Size and Flexibility Define the Inhibition of the H3N2 Influenza Endonuclease Enzyme by Calix[n]arenes. Antibiotics (Basel) 2019; 8:antibiotics8020073. [PMID: 31163674 PMCID: PMC6627454 DOI: 10.3390/antibiotics8020073] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Revised: 05/29/2019] [Accepted: 05/30/2019] [Indexed: 12/21/2022] Open
Abstract
Inhibition of H3N2 influenza PA endonuclease activity by a panel of anionic calix[n]arenes and β-cyclodextrin sulfate has been studied. The joint experimental and theoretical results reveal that the larger, more flexible and highly water-soluble sulfonato-calix[n]arenes have high inhibitory activity, with para-sulfonato-calix[8]arene, SC8, having an IC50 value of 6.4 μM. Molecular docking calculations show the SC8 can interact at both the polyanion binding site and also the catalytic site of H3N2 influenza PA endonuclease.
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Tauran Y, Kumemura M, Tarhan MC, Perret G, Perret F, Jalabert L, Collard D, Fujita H, Coleman AW. Direct measurement of the mechanical properties of a chromatin analog and the epigenetic effects of para-sulphonato-calix[4]arene. Sci Rep 2019; 9:5816. [PMID: 30967623 PMCID: PMC6456576 DOI: 10.1038/s41598-019-42267-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2018] [Accepted: 03/25/2019] [Indexed: 02/06/2023] Open
Abstract
By means of Silicon Nano Tweezers (SNTs) the effects on the mechanical properties of λ-phage DNA during interaction with calf thymus nucleosome to form an artificial chromatin analog were measured. At a concentration of 100 nM, a nucleosome solution induced a strong stiffening effect on DNA (1.1 N m-1). This can be compared to the effects of the histone proteins, H1, H2A, H3 where no changes in the mechanical properties of DNA were observed and the complex of the H3/H4 proteins where a smaller increase in the stiffness is observed (0.2 N m-1). Para-sulphonato-calix[4]arene, SC4, known for epigenetic activity by interacting specifically with the lysine groups of histone proteins, was studied for its effect on an artificial chromatin. Using a microfluidic SNT device, SC4 was titrated against the artificial chromatin, at a concentration of 1 mM in SC4 a considerable increase in stiffness, 15 N m-1, was observed. Simultaneously optical microscopy showed a physical change in the DNA structure between the tips of the SNT device. Electronic and Atomic Force microscopy confirmed this structural re-arrangement. Negative control experiments confirmed that these mechanical and physical effects were induced neither by the acidity of SC4 nor through nonspecific interactions of SC4 on DNA.
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Affiliation(s)
- Yannick Tauran
- LMI CNRS UMR 5615, Université Lyon 1, Villeurbanne, 69622, France.
- LIMMS/CNRS-IIS UMI 2820, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan.
| | - Momoko Kumemura
- LIMMS/CNRS-IIS UMI 2820, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
- CIRMM, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
- Graduate School of Life Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka, 808-0196, Japan
| | - Mehmet C Tarhan
- Univ. Lille, CNRS, Centrale Lille, ISEN, Univ. Valenciennes, UMR 8520-IEMN, Lille, F59000, France
- CNRS/IIS/COL/Lille 1 SMMiL-E project, 59046, Lille Cedex, France
| | - Grégoire Perret
- LIMMS/CNRS-IIS UMI 2820, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
- CNRS/IIS/COL/Lille 1 SMMiL-E project, 59046, Lille Cedex, France
| | - Florent Perret
- ICBMS, CNRS UMR 5246, Université Lyon 1, Villeurbanne, 69622, France
| | - Laurent Jalabert
- LIMMS/CNRS-IIS UMI 2820, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
- CIRMM, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
| | - Dominique Collard
- LIMMS/CNRS-IIS UMI 2820, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
- CNRS/IIS/COL/Lille 1 SMMiL-E project, 59046, Lille Cedex, France
| | - Hiroyuki Fujita
- LIMMS/CNRS-IIS UMI 2820, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
- CIRMM, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
| | - Anthony W Coleman
- CIRMM, Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
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Roka E, Vecsernyes M, Bacskay I, Félix C, Rhimi M, Coleman AW, Perret F. para-Sulphonato-calix[n]arenes as selective activators for the passage of molecules across the Caco-2 model intestinal membrane. Chem Commun (Camb) 2015; 51:9374-6. [PMID: 25958962 DOI: 10.1039/c5cc01777g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The passage of Lucifer Yellow across the Caco-2 intestinal model membrane has been studied for the para-sulphonato-calix[n]arenes, the results show that para-sulphonato-calix[4]arene and para-sulphonato-calix[8]arene activate membrane passage when used simultaneously with a transport probe, Lucifer Yellow, whereas para-sulphonato-calix[6]arene has no effect.
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Affiliation(s)
- Eszter Roka
- University of Debrecen, Department of Pharmaceutical Technology, Debrecen, Hungary.
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Lesniewska B, Perret F, Suwinska K, Coleman AW. Structural characterization of inclusion complexes of para-sulphonato-calix[8]arene with 1,2-bis(4-pyridyl)-ethane and 1,3-bis(4-pyridyl)-propane. New ‘double cone’ and ‘up–flat–down’ conformations of para-sulphonato-calix[8]arene. CrystEngComm 2014. [DOI: 10.1039/c3ce42303d] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Two new conformations of para-sulphonato-calix[8]arene have been found in supramolecular complexes with BPE and BPP, the gas take-up has been demonstrated for S8C–BPE complex.
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Affiliation(s)
- B. Lesniewska
- Institute of Physical Chemistry
- Polish Academy of Sciences
- PL-01 224 Warszawa, Poland
| | - F. Perret
- ICBMS
- CNRS UMR4246
- University Lyon 1
- Villeurbanne, France
| | - K. Suwinska
- Institute of Physical Chemistry
- Polish Academy of Sciences
- PL-01 224 Warszawa, Poland
- Faculty of Biology and Environmental Sciences
- Cardinal Stefan Wyszynski University
| | - A. W. Coleman
- LMI CNRS UMR 5615
- University Lyon 1
- Villeurbanne, France
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Anionic calixarene-capped silver nanoparticles show species-dependent binding to serum albumins. Molecules 2013; 18:5993-6007. [PMID: 23698051 PMCID: PMC6270145 DOI: 10.3390/molecules18055993] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2013] [Revised: 04/25/2013] [Accepted: 05/09/2013] [Indexed: 11/24/2022] Open
Abstract
The anionic calixarenes para-sulphonatocalix[4]arene and 1,3-di-O-phosphonatocalix[4]arene, have been used to cap silver nanoparticles. The binding of these functional particles with regard to various serum albumins (bovine serum albumin, human serum albumin, porcine serum albumin and sheep serum albumin) has been studied by variable temperature fluorescence spectroscopy. The quenching of the fluorescence of the proteins was shown to vary as a function of the anionic calixarene capping molecule and also as a function of the origin of the serum albumin. It is thus possible to discriminate between the different species.
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Oshima T, Baba Y. Recognition of exterior protein surfaces using artificial ligands based on calixarenes, crown ethers, and tetraphenylporphyrins. J INCL PHENOM MACRO 2011. [DOI: 10.1007/s10847-011-0088-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Abstract
This review treats the biological properties of the various anionic calix[n]arenes, both as soluble forms and in the colloidal state. The complexation of these molecules with amino-acids, peptides and proteins is discussed, as is their interaction with model membranes. The complexations with various Active Pharmaceutical Ingredients as complexes, for tamoxifen as solid state and colloidal structures, are treated in depth. Two sections deal with the direct biological action of the calix[n]arenes and their use as biosensors. A final section deals with the toxicity, in reality the lack of toxicity of the calix[n]arenes.
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Affiliation(s)
- Florent Perret
- ICBMS, UMR 5246, Univ Lyon 1, Villeurbanne, F69622, France.
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Dupont N, Navaza A, Coleman AW, Shkurenko O, Suwinska K. Influence of the nature of the solvent of crystallization on X-ray crystal structures of para-azidomethyltetrahydroxy-calix[4]arene. J Mol Struct 2011. [DOI: 10.1016/j.molstruc.2011.01.067] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Nault LFA, Girardot C, Leydier A, Coleman AW, Perrotton T, Magnard S, Baubichon-Cortay H. Magnesium dependent complexation of tri-anionic calix[4]arene detergents by the nucleotide binding domain 1 (NBD1) of multidrug resistance protein MRP1. NEW J CHEM 2010. [DOI: 10.1039/c0nj00323a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Moubarak J, Moreno E, Diesis E, Coleman AW. Use of Electrospray Mass Spectromtery to Study the Interactions between Para-Sulphonato-Calix[4]Arene and a Series of Serum Albumin Proteins. CHEMISTRY JOURNAL OF MOLDOVA 2009. [DOI: 10.19261/cjm.2009.04(2).04] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
The binding of para-Sulphonato-calix[4]arene to a series of Serum Albumin Proteins has been studied using Electrospray Mass Spectrometry, each protein shows different capacities to interact with para-Sulphonato-calix[4]arene, including the number of ligands bound, the Association Constants observed, and the stoichiometries at which the onset of each binding event is observed.
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Danylyuk O, Suwinska K. Solid-state interactions of calixarenes with biorelevant molecules. Chem Commun (Camb) 2009:5799-813. [PMID: 19787105 DOI: 10.1039/b910331g] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Among all crystalline complexes of calix-type calix[n]arenes those with organic molecules which are biologically relevant are especially of interest due to their potential medical and pharmaceutical applications. The co-crystallization of drugs with water-soluble calixarenes offers the opportunity to modify chemical and physical properties of APIs (active pharmaceutical ingredients) and to control drug conformation. Such co-crystallization can improve solubility, bioavailability and stability of pharmaceutically active molecules and/or eliminate polymorphism. In this article the solid-state interactions between calixarene hosts and biologically relevant guest molecules are summarized for the currently available structures solved by single-crystal X-ray crystallography.
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Affiliation(s)
- Oksana Danylyuk
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, PL-01 224 Warszawa, Poland
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Danylyuk O, Ghera BB, Lazar AN, Coleman AW, Suwinska K. The solid-state structures of para-sulphonatocalix[4]arene with the biologically active oligoammonium cations of norspermidine and triethyltetramine. J Mol Struct 2008. [DOI: 10.1016/j.molstruc.2008.04.027] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Coleman AW, Jebors S, Cecillon S, Perret P, Garin D, Marti-Battle D, Moulin M. Toxicity and biodistribution of para-sulfonato-calix[4]arene in mice. NEW J CHEM 2008. [DOI: 10.1039/b718962a] [Citation(s) in RCA: 122] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Coleman AW, Jebors S, Shahgaldian P, Ananchenko GS, Ripmeester JA. para-Acylcalix[n]arenes: from molecular to macroscopic assemblies. Chem Commun (Camb) 2008:2291-303. [DOI: 10.1039/b717495k] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Hayashida O, Uchiyama M. Rotaxane-type resorcinarene tetramers as histone-sensing fluorescent receptors. Org Biomol Chem 2008; 6:3166-70. [DOI: 10.1039/b804431g] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Jebors S, Fache F, Balme S, Devoge F, Monachino M, Cecillon S, Coleman AW. Designer amphiphiles based on para-acyl-calix[8]arenes. Org Biomol Chem 2008; 6:319-29. [DOI: 10.1039/b713883k] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Mbemba C, Sigaud K, Perret F, Suwinska K, Shkurenko O, Coleman AW. Calix[n]arenes as components for the construction of micellar systems: synthesis and self-assembly properties of 5,11,17-Tris[(dimethylamino)methyl]-25-monoalkoxy-26,27,28-trihydroxycalix[4]arene derivatives. J INCL PHENOM MACRO 2007. [DOI: 10.1007/s10847-007-9390-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Hayashida O, Ogawa N, Uchiyama M. Surface recognition and fluorescence sensing of histone by dansyl-appended cyclophane-based resorcinarene trimer. J Am Chem Soc 2007; 129:13698-705. [PMID: 17929813 DOI: 10.1021/ja074906h] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A cyclophane-based resorcinarene trimer (3) bearing a dansyl moiety as an environmentally sensitive fluorophore was prepared by stepwise condensation of a tetraaza[6.1.6.1]paracyclophane skeleton with a dansyl moiety and three resorcinarene derivatives having heptacarboxylic acid residues in this sequence. The dansyl-appended cyclophane exhibited the following fluorescence properties regarding solvent polarity dependency and histone surface recognition: With increasing dioxane contents in dioxane/water solvents, the fluorescence intensity originating from the dansyl moiety of 3 increased along with a concomitant blue shift of the fluorescence maximum (lambdaem). The microenvironmentally sensitive fluorescence properties of dansyl fluorophore were maintained, even when the dansyl moiety was covalently attached to a cyclophane. Most interestingly, the cyclophane-based resorcinarene trimer exhibited recognition and fluorescence sensing capabilities toward histone, a small basic protein of eukaryotic chromatins. The fluorescence intensity originating from 3 increased along with a concomitant blue shift of lambdaem upon the addition of histone, reflecting the formation of 3-histone complexes. A relatively large fluorescence polarization (P) value was obtained for the 3-histone complexes (0.15), reflecting highly restricted conformations of 3, and the obtained P value was much larger than that of 3 alone in aqueous medium (0.07). The binding constant (K) of 3 with histone (unit basis) was estimated to be 2.1 x 106 M-1. On the other hand, upon the addition of acetylated histone (Ac-histone) to an aqueous solution containing 3, the extent of change in fluorescence intensity originating from the dansyl group of 3 was almost negligible, indicating that the electrostatic interactions between 3 and Ac-histone were weak. In addition, the fluorescence spectral changes were also small or negligible upon the addition of other proteins such as albumin, ovalbumin, peanut agglutinin, myoglobin, concanavalin A, cytochrome c, and lysozyme, having isoelectric points of 4.7, 4.8, 5.7-6.7, 6.8, 7.1, 9, and 11.0, respectively, to an aqueous solution containing 3.
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Affiliation(s)
- Osamu Hayashida
- Institute for Materials Chemistry and Engineering, Kyushu University, Moto-oka 744, Fukuoka, Japan.
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