1
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Becharguia N, Wasielewski E, Abidi R, Nierengarten I, Nierengarten JF. Stepwise Functionalization of a Pillar[5]arene-Containing [2]Rotaxane with Pentafluorophenyl Ester Stoppers. Chemistry 2024; 30:e202303501. [PMID: 37983752 DOI: 10.1002/chem.202303501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 11/18/2023] [Accepted: 11/20/2023] [Indexed: 11/22/2023]
Abstract
Detailed investigations into the stepwise bis-functionalization of a pillar[5]arene-containing rotaxane building block have been carried out. Upon a first stopper exchange, the pillar[5]arene moiety of the mono-acylated product is preferentially located close to its reactive pentafluorophenyl ester stopper, thus limiting the accessibility to the reactive carbonyl group by the nucleophilic reagents. Selective mono-functionalization is thus very efficient. Introduction of a second stopper is then possible to generate dissymmetrical rotaxanes with different amide stoppers. Moreover, when dethreading is possible upon the second acylation, the pillar[5]arene plays the role of a protecting group allowing the synthesis of dissymmetrical axles that are particularly difficult to prepare under statistical conditions. Finally, detailed conformation analysis of the rotaxanes revealed that the position of the pillar[5]arene moiety on its axle subunit is mainly governed by polar interactions in nonpolar organic solvents, whereas solvophobic effects play a major role in polar solvents.
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Affiliation(s)
- Nihed Becharguia
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
- Laboratoire d'Applications de la Chimie aux Ressources et, Substances Naturelles et l'Environnement, Faculté des Sciences de Bizerte, Université de Carthage, 7021 Zarzouna, Bizerte, Tunisia
| | - Emeric Wasielewski
- Plateforme RMN Cronenbourg, Université de Strasbourg et CNRS (UMR 7042 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Rym Abidi
- Laboratoire d'Applications de la Chimie aux Ressources et, Substances Naturelles et l'Environnement, Faculté des Sciences de Bizerte, Université de Carthage, 7021 Zarzouna, Bizerte, Tunisia
| | - Iwona Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Jean-François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
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2
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Gauthier M, Waelès P, Coutrot F. Post-Synthetic Macrocyclization of Rotaxane Building Blocks. Chempluschem 2021; 87:e202100458. [PMID: 34811956 DOI: 10.1002/cplu.202100458] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 11/11/2021] [Indexed: 11/06/2022]
Abstract
Although not often encountered, cyclic interlocked molecules are appealing molecular targets because of their restrained tridimensional structure which is related to both the cyclic and interlocked shapes. Interlocked molecules such as rotaxane building blocks may be good candidates for post-synthetic intramolecular cyclization if the preservation of the mechanical bond ensures the interlocked architecture throughout the reaction. This is obviously the case if the modification does not involve the cleavage of either the macrocycle's main chain or the encircled part of the axle. However, among the post-synthetic reactions, the chemical linkage between two reactive sites belonging to embedded elements of rotaxanes still consists of an underexploited route to interlocked cyclic molecules. This Review lists the rare examples of macrocyclization through chemical connection between reactive sites belonging to a surrounding macrocycle and/or an encircled axle of interlocked rotaxanes.
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Affiliation(s)
- Maxime Gauthier
- Supramolecular Machines and Architectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France
| | - Philip Waelès
- Supramolecular Machines and Architectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France
| | - Frédéric Coutrot
- Supramolecular Machines and Architectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France
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3
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Borodin O, Shchukin Y, Robertson CC, Richter S, von Delius M. Self-Assembly of Stimuli-Responsive [2]Rotaxanes by Amidinium Exchange. J Am Chem Soc 2021; 143:16448-16457. [PMID: 34559523 PMCID: PMC8517971 DOI: 10.1021/jacs.1c05230] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
![]()
Advances in supramolecular
chemistry are often underpinned by the
development of fundamental building blocks and methods enabling their
interconversion. In this work, we report the use of an underexplored
dynamic covalent reaction for the synthesis of stimuli-responsive
[2]rotaxanes. The formamidinium moiety lies at the heart of these
mechanically interlocked architectures, because it enables both dynamic
covalent exchange and the binding of simple crown ethers. We demonstrated
that the rotaxane self-assembly follows a unique reaction pathway
and that the complex interplay between crown ether and thread can
be controlled in a transient fashion by addition of base and fuel
acid. Dynamic combinatorial libraries, when exposed to diverse nucleophiles,
revealed a profound stabilizing effect of the mechanical bond as well
as intriguing reactivity differences between seemingly similar [2]rotaxanes.
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Affiliation(s)
- Oleg Borodin
- Institute of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Yevhenii Shchukin
- Institute of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Craig C Robertson
- Department of Chemistry, University of Sheffield, Brook Hill, Sheffield S3 7HF, U.K
| | - Stefan Richter
- Institute of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Max von Delius
- Institute of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
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4
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Waelès P, Gauthier M, Coutrot F. Challenges and Opportunities in the Post-Synthetic Modification of Interlocked Molecules. Angew Chem Int Ed Engl 2021; 60:16778-16799. [PMID: 32894812 DOI: 10.1002/anie.202007496] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 08/24/2020] [Indexed: 12/12/2022]
Abstract
Several strategies have been successfully utilised to obtain a wide range of interlocked molecules. However, some interlocked compounds are still not obtained directly and/or efficiently from non-interlocked components because the requisites for self-assembly cannot always be enforced. To circumvent such a synthetic problem, a strategy that consists of synthesizing an isolable and storable interlocked building block in a step that precedes its modification is an appealing chemical route to more sophisticated interlocked molecules. Synthetic opportunities and challenges are closely linked to the fact that the mechanical bond might greatly affect the reactivity of a functionality of the encircled axle, but that the interlocked architecture needs to be preserved during the synthesis. Hence, the mechanical bond plays a fundamental role in the strategy employed. This Review focuses on the challenging post-synthetic modifications of interlocked molecules, sometimes through cleavage of the axle's main chain, but always with conservation of the mechanical bond.
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Affiliation(s)
- Philip Waelès
- Supramolecular Machines and ARchitectures Team, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Maxime Gauthier
- Supramolecular Machines and ARchitectures Team, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Frédéric Coutrot
- Supramolecular Machines and ARchitectures Team, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
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5
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Waelès P, Gauthier M, Coutrot F. Challenges and Opportunities in the Post‐Synthetic Modification of Interlocked Molecules. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202007496] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Philip Waelès
- Supramolecular Machines and ARchitectures Team Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS Université de Montpellier ENSCM case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Maxime Gauthier
- Supramolecular Machines and ARchitectures Team Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS Université de Montpellier ENSCM case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Frédéric Coutrot
- Supramolecular Machines and ARchitectures Team Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS Université de Montpellier ENSCM case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon 34095 Montpellier cedex 5 France
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6
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Gauthier M, Koehler V, Clavel C, Kauffmann B, Huc I, Ferrand Y, Coutrot F. Interplay between a Foldamer Helix and a Macrocycle in a Foldarotaxane Architecture. Angew Chem Int Ed Engl 2021; 60:8380-8384. [PMID: 33475210 DOI: 10.1002/anie.202100349] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Indexed: 11/07/2022]
Abstract
The design and synthesis of a novel rotaxane/foldaxane hybrid architecture is reported. The winding of an aromatic oligoamide helix host around a dumbbell-shaped thread-like guest, or axle, already surrounded by a macrocycle was evidenced by NMR spectroscopy and X-ray crystallography. The process proved to depend on the position of the macrocycle along the axle and the associated steric hindrance. The macrocycle thus behaves as a switchable shield that modulates the affinity of the helix for the axle. Reciprocally, the foldamer helix acts as a supramolecular auxiliary that compartmentalizes the axle. In some cases, the macrocycle is forced to move along the axle to allow the foldamer to reach its best recognition site.
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Affiliation(s)
- Maxime Gauthier
- Supramolecular Machines and ARchitectures Team, Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Victor Koehler
- Institut de Chimie et Biologie des Membranes et Nano-objets CBMN (UMR5248), Université de Bordeaux, CNRS, IPB, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Caroline Clavel
- Supramolecular Machines and ARchitectures Team, Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Brice Kauffmann
- Université de Bordeaux, CNRS, INSERM, UMS3033, IECB, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Ivan Huc
- Department of Pharmacy and Center for Integrated Protein Science, Ludwig-Maximilians-Universität, Butenandtstr. 5-13, 81377, München, Germany
| | - Yann Ferrand
- Institut de Chimie et Biologie des Membranes et Nano-objets CBMN (UMR5248), Université de Bordeaux, CNRS, IPB, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Frédéric Coutrot
- Supramolecular Machines and ARchitectures Team, Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS, Université de Montpellier, ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage, Faculté des Sciences, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
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7
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Gauthier M, Koehler V, Clavel C, Kauffmann B, Huc I, Ferrand Y, Coutrot F. Interplay between a Foldamer Helix and a Macrocycle in a Foldarotaxane Architecture. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202100349] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Maxime Gauthier
- Supramolecular Machines and ARchitectures Team Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS Université de Montpellier ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage Faculté des Sciences Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Victor Koehler
- Institut de Chimie et Biologie des Membranes et Nano-objets CBMN (UMR5248) Université de Bordeaux CNRS, IPB 2 rue Robert Escarpit 33600 Pessac France
| | - Caroline Clavel
- Supramolecular Machines and ARchitectures Team Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS Université de Montpellier ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage Faculté des Sciences Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Brice Kauffmann
- Université de Bordeaux CNRS INSERM, UMS3033 IECB 2 rue Robert Escarpit 33600 Pessac France
| | - Ivan Huc
- Department of Pharmacy and Center for Integrated Protein Science Ludwig-Maximilians-Universität Butenandtstr. 5–13 81377 München Germany
| | - Yann Ferrand
- Institut de Chimie et Biologie des Membranes et Nano-objets CBMN (UMR5248) Université de Bordeaux CNRS, IPB 2 rue Robert Escarpit 33600 Pessac France
| | - Frédéric Coutrot
- Supramolecular Machines and ARchitectures Team Institut des Biomolécules Max Mousseron (IBMM) UMR 5247 CNRS Université de Montpellier ENSCM, case courrier 1706, Bâtiment Chimie (17), 3ème étage Faculté des Sciences Place Eugène Bataillon 34095 Montpellier cedex 5 France
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8
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Riaño A, Carini M, Melle-Franco M, Mateo-Alonso A. Mechanically Interlocked Nitrogenated Nanographenes. J Am Chem Soc 2020; 142:20481-20488. [PMID: 33213145 DOI: 10.1021/jacs.0c10345] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Herein, we report the synthesis of mechanically interlocked nitrogenated nanographenes. These systems have been obtained by clipping different tetralactam macrocycles around a 1.9 nm dumbbell-shaped nitrogenated nanographene. Thermal, optoelectronic, and electrochemical characterization of the different mechanically interlocked nanographenes evidence enhanced thermal and photochemical stability, and also absorption and emission properties that vary with the structure of the macrocycle.
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Affiliation(s)
- Alberto Riaño
- POLYMAT, University of the Basque Country UPV/EHU, Avenida de Tolosa 72, Donostia-San Sebastián 20018, Spain
| | - Marco Carini
- POLYMAT, University of the Basque Country UPV/EHU, Avenida de Tolosa 72, Donostia-San Sebastián 20018, Spain
| | - Manuel Melle-Franco
- CICECO - Aveiro Institute of Materials, Department of Chemistry, University of Aveiro, Aveiro 3810-193, Portugal
| | - Aurelio Mateo-Alonso
- POLYMAT, University of the Basque Country UPV/EHU, Avenida de Tolosa 72, Donostia-San Sebastián 20018, Spain.,Ikerbasque, Basque Foundation for Science, Bilbao, Spain
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9
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Soto MA, Lelj F, MacLachlan MJ. Programming permanent and transient molecular protection via mechanical stoppering. Chem Sci 2019; 10:10422-10427. [PMID: 32110334 PMCID: PMC6988755 DOI: 10.1039/c9sc03744f] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Accepted: 09/28/2019] [Indexed: 01/09/2023] Open
Abstract
Chemical protection is an essential tool in synthetic chemistry, which involves blocking reactive sites on a molecule through covalent bonds. Physical approaches, such as encapsulation and host-mediated protection, have emerged as interesting alternatives that use steric bulk to inhibit reactivity. Here, we report the protection of a redox-active viologen through its incorporation into mechanically interlocked molecules (MIMs), namely hetero[4]rotaxanes. The viologen was confined inside a host cavity and flanked by two mechanical stoppers, which allowed for permanent and transient protection. Deprotection occurred on-demand via an unstoppering process, triggered by a proton transfer, polarity effect, or a thermal stimulus. We anticipate that permanent and transient mechanical stoppering could be incorporated into devices to function as molecular probes, transport/delivery systems, or stimuli-controlled degradable materials.
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Affiliation(s)
- Miguel A Soto
- Department of Chemistry , University of British Columbia , 2036 Main Mall , Vancouver , BC , V6T 1Z1 Canada .
| | - Francesco Lelj
- La.M.I. and LaSCAMM INSTM Sezione Basilicata , Dipartimento di Chimica , Università della Basilicata , via dell'Ateneo Lucano 10 , Potenza , 85100 Italy
| | - Mark J MacLachlan
- Department of Chemistry , University of British Columbia , 2036 Main Mall , Vancouver , BC , V6T 1Z1 Canada .
- Quantum Matter Institute , University of British Columbia , 2355 East Mall , Vancouver , BC , V6T 1Z4 Canada
- WPI Nano Life Science Institute , Kanazawa University , Kanazawa , 920-1192 Japan
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10
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Barrejón M, Mateo-Alonso A, Prato M. Carbon Nanostructures in Rotaxane Architectures. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900252] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Myriam Barrejón
- Instituto de Nanociencia; Nanotecnología y Materiales Moleculares (INAMOL); Universidad de Castilla La-Mancha; 45071 Toledo Spain
| | - Aurelio Mateo-Alonso
- POLYMAT; University of the Basque Country UPV/EHU; Avenida de Tolosa 72 20018 Donostia-San Sebastian Spain
- Ikerbasque; Basque Foundation for Science; 48013 Bilbao Spain
| | - Maurizio Prato
- Ikerbasque; Basque Foundation for Science; 48013 Bilbao Spain
- Department of Chemical and Pharmaceutical Sciences; Università degli Studi di Trieste; Via Licio Giorgieri 1 34127 Trieste Italy
- Carbon Bionanotechnology Group CICbiomaGUNE; Paseo Miramón 182 20014 Donostia-San Sebastián Spain
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11
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Modicom F, Jamieson EMG, Rochette E, Goldup SM. Chemical Consequences of the Mechanical Bond: A Tandem Active Template-Rearrangement Reaction. Angew Chem Int Ed Engl 2019; 58:3875-3879. [PMID: 30600892 PMCID: PMC6589916 DOI: 10.1002/anie.201813950] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Indexed: 01/07/2023]
Abstract
We report the unexpected discovery of a tandem active template CuAAC‐rearrangement process, in which N2 is extruded on the way to the 1,2,3‐triazole product to give instead acrylamide rotaxanes. Mechanistic investigations suggest this process is dictated by the mechanical bond, which stabilizes the CuI‐triazolide intermediate of the CuAAC reaction and diverts it down the rearrangement pathway; when no mechanical bond is formed, the CuAAC product is isolated.
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Affiliation(s)
- Florian Modicom
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK
| | - Ellen M G Jamieson
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK
| | - Elise Rochette
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK
| | - Stephen M Goldup
- Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK
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12
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Modicom F, Jamieson EMG, Rochette E, Goldup SM. Chemical Consequences of the Mechanical Bond: A Tandem Active Template‐Rearrangement Reaction. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201813950] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Florian Modicom
- ChemistryUniversity of Southampton, Highfield Southampton SO17 1BJ UK
| | | | - Elise Rochette
- ChemistryUniversity of Southampton, Highfield Southampton SO17 1BJ UK
| | - Stephen M. Goldup
- ChemistryUniversity of Southampton, Highfield Southampton SO17 1BJ UK
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13
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Carini M, Da Ros T, Prato M, Mateo-Alonso A. Shuttling as a Strategy to Control the Regiochemistry of Bis-Additions on Fullerene Derivatives. Chemphyschem 2016; 17:1823-8. [DOI: 10.1002/cphc.201501174] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Indexed: 11/07/2022]
Affiliation(s)
- Marco Carini
- Department of Chemical and Pharmaceutical Sciences; University di Trieste; Piazzale Europa 1 34127 Trieste Italy
- POLYMAT; University of the Basque Country UPV/EHU; Avenida de Tolosa 72 20018 Donostia-San Sebastián Spain
| | - Tatiana Da Ros
- Department of Chemical and Pharmaceutical Sciences; University di Trieste; Piazzale Europa 1 34127 Trieste Italy
| | - Maurizio Prato
- Department of Chemical and Pharmaceutical Sciences; University di Trieste; Piazzale Europa 1 34127 Trieste Italy
- Carbon Nanobiotechnology Laboratory; CIC biomaGUNE; Paseo de Miramón 182 20009 Donostia-San Sebastian Spain
- Ikerbasque; Basque Foundation for Science; 48011 Bilbao Spain
| | - Aurelio Mateo-Alonso
- POLYMAT; University of the Basque Country UPV/EHU; Avenida de Tolosa 72 20018 Donostia-San Sebastián Spain
- Ikerbasque; Basque Foundation for Science; 48011 Bilbao Spain
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14
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Martinez-Cuezva A, Pastor A, Cioncoloni G, Orenes RA, Alajarin M, Symes MD, Berna J. Versatile control of the submolecular motion of di(acylamino)pyridine-based [2]rotaxanes. Chem Sci 2015; 6:3087-3094. [PMID: 28706682 PMCID: PMC5490047 DOI: 10.1039/c5sc00790a] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 03/18/2015] [Indexed: 11/21/2022] Open
Abstract
A cyclic network of chemical reactions has been conceived for exchanging the dynamic behaviour of di(acylamino)pyridine-based rotaxanes and surrogates. X-ray diffraction studies revealed the intercomponent interactions in these interlocked compounds and were consistent with those found in solution by dynamic NMR experiments. This particular binding site was incorporated into a molecular shuttle enabled for accessing two states with an outstanding positional discrimination through chemical manipulation. Furthermore, the ability of the di(acylamino)pyridine domain to associate with external binders with a complementary array of HB donor and acceptor sites was exploited for the advance of an unprecedented electrochemical switch operating through a reversible anion radical recognition process.
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Affiliation(s)
- Alberto Martinez-Cuezva
- Departamento de Química Orgánica , Facultad de Química , Regional Campus of International Excellence "Campus Mare Nostrum" , Universidad de Murcia , E-30100 , Murcia , Spain .
| | - Aurelia Pastor
- Departamento de Química Orgánica , Facultad de Química , Regional Campus of International Excellence "Campus Mare Nostrum" , Universidad de Murcia , E-30100 , Murcia , Spain .
| | - Giacomo Cioncoloni
- WestCHEM , School of Chemistry , University of Glasgow , University Avenue , Glasgow G12 8QQ , UK
| | | | - Mateo Alajarin
- Departamento de Química Orgánica , Facultad de Química , Regional Campus of International Excellence "Campus Mare Nostrum" , Universidad de Murcia , E-30100 , Murcia , Spain .
| | - Mark D Symes
- WestCHEM , School of Chemistry , University of Glasgow , University Avenue , Glasgow G12 8QQ , UK
| | - Jose Berna
- Departamento de Química Orgánica , Facultad de Química , Regional Campus of International Excellence "Campus Mare Nostrum" , Universidad de Murcia , E-30100 , Murcia , Spain .
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15
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Abstract
This chapter aims at giving an overview of the different types of fullerene-stoppered bistable rotaxanes, their switching mechanism and their potential applications with a special focus on fullerene-driven molecular shuttles.
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Affiliation(s)
- Aurelio Mateo-Alonso
- POLYMAT, University of the Basque Country UPV/EHU, Avenida de Tolosa 72, E-20018, Donostia-San Sebastian, Spain,
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16
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Neal EA, Goldup SM. Chemical consequences of mechanical bonding in catenanes and rotaxanes: isomerism, modification, catalysis and molecular machines for synthesis. Chem Commun (Camb) 2014; 50:5128-42. [DOI: 10.1039/c3cc47842d] [Citation(s) in RCA: 207] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
We highlight some of the less discussed consequences of mechanical bonding for the chemical behaviour of catenanes and rotaxanes, including striking recent examples where molecular motion controls chemical reactions.
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Affiliation(s)
- Edward A. Neal
- School of Biological and Chemical Science
- Queen Mary University of London
- London, UK
| | - Stephen M. Goldup
- School of Biological and Chemical Science
- Queen Mary University of London
- London, UK
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17
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Zhang JN, Li H, Zhou W, Yu SL, Qu DH, Tian H. Fluorescence modulation in tribranched switchable [4]rotaxanes. Chemistry 2013; 19:17192-200. [PMID: 24203853 DOI: 10.1002/chem.201303026] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2013] [Revised: 09/05/2013] [Indexed: 11/10/2022]
Abstract
Two novel tribranched [4]rotaxanes with a 1,3,5-triphenylene core and three rotaxane arms have been designed, synthesized, and characterized by (1)H and (13)C NMR spectroscopies and HR-ESI mass spectrometry. [4]Rotaxanes 1 and 2 each possess the same three-armed skeleton. Each arm incorporates two distinguishable binding sites for a dibenzo[24]crown-8 ring, namely a dibenzylammonium site and an N-methyltriazolium site, and is terminated by a 4-morpholino-naphthalimide fluorophore as a stopper. [4]Rotaxane 1 has three di-ferrocene-functionalized dibenzo[24]crown-8 rings whereas 2 has three simple dibenzo[24]crown-8 rings interlocked with the thread component. Uniform shuttling motions of the three macrocycles in both 1 and 2 can be driven by external acid-base stimuli, which were confirmed by (1)H NMR spectroscopy. However, [4]rotaxanes 1 and 2 show distinct modes of fluorescence modulation in response to external acid-base stimuli. [4]Rotaxane 1 exhibits a remarkable fluorescence decrease in response to the addition of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) as a base, which can displace the ferrocene-functionalized macrocycle from the dibenzylammonium station to the N-methyltriazolium station. In contrast, the fluorescence intensity of [4]rotaxane 2 showed an enhancement with the addition of DBU. Time-resolved fluorescence measurements have been performed. The different photoinduced electron-transfer processes responsible for the fluorescence changes in the two molecular systems are discussed. Topological structures of this kind have significant potential for the design and construction of large and complex assemblies with controllable functions.
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Affiliation(s)
- Ji-Na Zhang
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, East China University of Science & Technology, Shanghai 200237 (P. R. China), Fax: (+86) 21-64252288
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18
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Delgado JL, Filippone S, Giacalone F, Herranz MA, Illescas B, Pérez EM, Martín N. Buckyballs. Top Curr Chem (Cham) 2013; 350:1-64. [PMID: 23539380 DOI: 10.1007/128_2012_414] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Buckyballs represent a new and fascinating molecular allotropic form of carbon that has received a lot of attention by the chemical community during the last two decades. The unabating interest on this singular family of highly strained carbon spheres has allowed the establishing of the fundamental chemical reactivity of these carbon cages and, therefore, a huge variety of fullerene derivatives involving [60] and [70]fullerenes, higher fullerenes, and endohedral fullerenes have been prepared. Much less is known, however, of the chemistry of the uncommon non-IPR fullerenes which currently represent a scientific curiosity and which could pave the way to a range of new fullerenes. In this review on buckyballs we have mainly focused on the most recent and novel covalent chemistry of fullerenes involving metal catalysis and asymmetric synthesis, as well as on some of the most significant advances in supramolecular chemistry, namely H-bonded fullerene assemblies and the search for efficient concave receptors for the convex surface of fullerenes. Furthermore, we have also described the recent advances in the macromolecular chemistry of fullerenes, that is, those polymer molecules endowed with fullerenes which have been classified according to their chemical structures. This review is completed with the study of endohedral fullerenes, a new family of fullerenes in which the carbon cage of the fullerene contains a metal, molecule, or metal complex in the inner cavity. The presence of these species affords new fullerenes with completely different properties and chemical reactivity, thus opening a new avenue in which a more precise control of the photophysical and redox properties of fullerenes is possible. The use of fullerenes for organic electronics, namely in photovoltaic applications and molecular wires, complements the study and highlights the interest in these carbon allotropes for realistic practical applications. We have pointed out the so-called non-IPR fullerenes - those that do not follow the isolated pentagon rule - as the most intriguing class of fullerenes which, up to now, have only shown the tip of the huge iceberg behind the examples reported in the literature. The number of possible non-IPR carbon cages is almost infinite and the near future will show us whether they will become a reality.
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Affiliation(s)
- Juan L Delgado
- IMDEA-Nanoscience, Campus de Cantoblanco, 28049, Madrid, Spain
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19
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Scarel F, Valenti G, Gaikwad S, Marcaccio M, Paolucci F, Mateo-Alonso A. A Molecular Shuttle Driven by Fullerene Radical-Anion Recognition. Chemistry 2012; 18:14063-8. [DOI: 10.1002/chem.201201264] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2012] [Revised: 06/05/2012] [Indexed: 11/09/2022]
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20
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Sarma R, Baruah JB. Formation of coordination polymer and molecular complex of 4,4′-bipyridyl-N,N′-dioxide of manganese and zinc. Inorganica Chim Acta 2011. [DOI: 10.1016/j.ica.2011.07.043] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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21
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Nakazono K, Takata T. Neutralization of a sec-Ammonium Group Unusually Stabilized by the “Rotaxane Effect”: Synthesis, Structure, and Dynamic Nature of a “Free” sec-Amine/Crown Ether-Type Rotaxane. Chemistry 2010; 16:13783-94. [DOI: 10.1002/chem.201000968] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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22
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Baumes JM, Murgu I, Oliver A, Smith BD. Using the Rotaxane Mechanical Bond to Enhance Chemical Reactivity. Org Lett 2010; 12:4980-3. [DOI: 10.1021/ol102132x] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jeffrey M. Baumes
- Department of Chemistry and Biochemistry, 236 Nieuwland Science Hall, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Ivan Murgu
- Department of Chemistry and Biochemistry, 236 Nieuwland Science Hall, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Allen Oliver
- Department of Chemistry and Biochemistry, 236 Nieuwland Science Hall, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Bradley D. Smith
- Department of Chemistry and Biochemistry, 236 Nieuwland Science Hall, University of Notre Dame, Notre Dame, Indiana 46556, United States
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23
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Sarma R, Boudalis AK, Baruah JB. Aromatic N-oxide bridged copper(II) coordination polymers: Synthesis, characterization and magnetic properties. Inorganica Chim Acta 2010; 363:2279-2286. [PMID: 32226111 PMCID: PMC7094217 DOI: 10.1016/j.ica.2010.03.050] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2010] [Revised: 03/16/2010] [Accepted: 03/19/2010] [Indexed: 11/16/2022]
Abstract
The complexes [Cu2(o-NO2-C6H4COO)4(PNO)2] (1), [Cu2(C6H5COO)4(2,2'-BPNO)] n (2), [Cu2(C6H5COO)4(4,4'-BPNO)] n (3), [Cu(p-OH-C6H4COO)2(4,4'-BPNO)2·H2O] n (4), (where PNO = pyridine N-oxide, 2,2'-BPNO = 2,2'-bipyridyl-N,N'-dioxide, 4,4'-BPNO = 4,4'-bipyridyl-N,N'-dioxide) are prepared and characterized and their magnetic properties are studied as a function of temperature. Complex 1 is a discrete dinuclear complex while complexes 2-4 are polymeric of which 2 and 3 have paddle wheel repeating units. Magnetic susceptibility measurements from polycrystalline samples of 1-4 revealed strong antiferromagnetic interactions within the {Cu2}4+ paddle wheel units and no discernible interactions between the units. The complex 5, [Cu(NicoNO)2·2H2O] n ·4nH2O, in which the bridging ligand to the adjacent copper(II) ions is nicotinate N-oxide (NicoNO) the transmitted interaction is very weakly antiferromagnetic.
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Affiliation(s)
- Rupam Sarma
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781 039, Assam, India
| | | | - Jubaraj B. Baruah
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781 039, Assam, India
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24
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Mateo-Alonso A, Prato M. Synthesis of Fullerene-Stoppered Rotaxanes Bearing Ferrocene Groups on the Macrocycle. European J Org Chem 2010. [DOI: 10.1002/ejoc.200901309] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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25
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Mateo-Alonso A. Mechanically interlocked molecular architectures functionalised with fullerenes. Chem Commun (Camb) 2010; 46:9089-99. [DOI: 10.1039/c0cc03724a] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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26
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Fu N, Baumes JM, Arunkumar E, Noll BC, Smith BD. Squaraine rotaxanes with boat conformation macrocycles. J Org Chem 2009; 74:6462-8. [PMID: 19639940 PMCID: PMC2847772 DOI: 10.1021/jo901298n] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Mechanical encapsulation of fluorescent, deep-red bis(anilino)squaraine dyes inside Leigh-type tetralactam macrocycles produces interlocked squaraine rotaxanes. The surrounding macrocycles are flexible and undergo rapid exchange of chair and boat conformations in solution. A series of X-ray crystal structures show how the rotaxane co-conformational exchange process involves simultaneous lateral oscillation of the macrocycle about the center of the encapsulated squaraine thread. Rotaxane macrocycles with 1,4-phenylene sidewalls and 2,6-pyridine dicarboxamide bridging units are more likely to adopt boat conformations in the solid state than analogous squaraine rotaxane systems with isophthalamide-containing macrocycles. A truncated squaraine dye, with a secondary amine attached directly to the central C(4)O(2) core, is less electrophilic than the extended bis(anilino)squaraine analogue, but it is still susceptible to chemical and photochemical bleaching. Its stability is greatly enhanced when it is encapsulated as an interlocked squaraine rotaxane. An X-ray crystal structure of this truncated squaraine rotaxane shows the macrocycle in a boat conformation, and NMR studies indicate that the boat is maintained in solution. Encapsulation as a rotaxane increases the dye's brightness by a factor of 6. The encapsulation process appears to constrain the dye and reduce deformation of the chromophore from planarity. This study shows how mechanical encapsulation as a rotaxane can be used as a rational design parameter to fine-tune the chemical and photochemical properties of squaraine dyes.
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Affiliation(s)
- Na Fu
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46545, USA
| | - Jeffrey M. Baumes
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46545, USA
| | - Easwaran Arunkumar
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46545, USA
| | - Bruce C. Noll
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46545, USA
| | - Bradley D. Smith
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46545, USA
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27
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Kharisov BI, Kharissova OV, Gomez MJ, Mendez UO. Recent Advances in the Synthesis, Characterization, and Applications of Fulleropyrrolidines. Ind Eng Chem Res 2008. [DOI: 10.1021/ie800602j] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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28
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Mateo-Alonso A, Guldi DM, Paolucci F, Prato M. Fullerenes: multitask components in molecular machinery. Angew Chem Int Ed Engl 2008; 46:8120-6. [PMID: 17926311 DOI: 10.1002/anie.200702725] [Citation(s) in RCA: 117] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Molecular machines are molecular-scale devices that carry out predetermined tasks derived from molecular motion. This Minireview illustrates how fullerenes can be used as multitask building blocks in molecular machinery, providing new perspectives for fullerenes. Indeed, C(60) can be applied as a photo- and electroactive stopper owing to its size, as a probe for molecular motion as a result of its well-defined physicochemical properties, and to induce motion through pi-pi interactions. Such molecular motion can be employed to modulate light-driven electron-transfer events, extending the potential applications of molecular machines to the typical fields of application of fullerenes.
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Affiliation(s)
- Aurelio Mateo-Alonso
- Dipartimento di Scienze Farmaceutiche and Consorzio Interuniversitario Nazionale per la Scienza e Tecnologia dei Materiali (INSTM), Unità di Trieste, Università degli Studi di Trieste, Piazzale Europa 1, 34127 Trieste, Italy.
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29
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Mateo-Alonso A, Guldi D, Paolucci F, Prato M. Fullerene: vielseitige Bausteine für molekulare Maschinen. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200702725] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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