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Veeresh K, Singh M, Gopi HN. Impact of substituent effects on the design of β-sheet mimetics and β-double helices from (E)-vinylogous γ-amino acid oligomers. Org Biomol Chem 2019; 17:9226-9231. [DOI: 10.1039/c9ob01801h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The impact of substituent effects at the γ-carbon on the structures of (E)-vinylogous γ-amino acid homooligomers is studied.
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Affiliation(s)
- Kuruva Veeresh
- Department of Chemistry
- Indian Institute of Science Education and Research
- Dr. Homi Bhabha Road
- India
| | - Manjeet Singh
- Department of Chemistry
- Indian Institute of Science Education and Research
- Dr. Homi Bhabha Road
- India
| | - Hosahudya N. Gopi
- Department of Chemistry
- Indian Institute of Science Education and Research
- Dr. Homi Bhabha Road
- India
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2
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Zhang K, Ma C, Li N, Lu C, Li D, Fu S, Gan Q. Quadruple hybridization of quinoline–triazole oligomers. Chem Commun (Camb) 2019; 55:10968-10971. [DOI: 10.1039/c9cc05506a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A series of quinoline–triazole oligomers self-assembled into quadruple helical structures is presented.
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Affiliation(s)
- Kai Zhang
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica
- School of Chemistry and Chemical Engineering
- Huazhong University of Science and Technology
- Wuhan
- P. R. China
| | - Chunmiao Ma
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica
- School of Chemistry and Chemical Engineering
- Huazhong University of Science and Technology
- Wuhan
- P. R. China
| | - Ning Li
- Rigaku Beijing Corporation
- Beijing
- P. R. China
| | - Chaocao Lu
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica
- School of Chemistry and Chemical Engineering
- Huazhong University of Science and Technology
- Wuhan
- P. R. China
| | - Dongyao Li
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica
- School of Chemistry and Chemical Engineering
- Huazhong University of Science and Technology
- Wuhan
- P. R. China
| | - Shitao Fu
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica
- School of Chemistry and Chemical Engineering
- Huazhong University of Science and Technology
- Wuhan
- P. R. China
| | - Quan Gan
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica
- School of Chemistry and Chemical Engineering
- Huazhong University of Science and Technology
- Wuhan
- P. R. China
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3
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Yashima E, Ousaka N, Taura D, Shimomura K, Ikai T, Maeda K. Supramolecular Helical Systems: Helical Assemblies of Small Molecules, Foldamers, and Polymers with Chiral Amplification and Their Functions. Chem Rev 2016; 116:13752-13990. [PMID: 27754649 DOI: 10.1021/acs.chemrev.6b00354] [Citation(s) in RCA: 1230] [Impact Index Per Article: 153.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
In this review, we describe the recent advances in supramolecular helical assemblies formed from chiral and achiral small molecules, oligomers (foldamers), and helical and nonhelical polymers from the viewpoints of their formations with unique chiral phenomena, such as amplification of chirality during the dynamic helically assembled processes, properties, and specific functionalities, some of which have not been observed in or achieved by biological systems. In addition, a brief historical overview of the helical assemblies of small molecules and remarkable progress in the synthesis of single-stranded and multistranded helical foldamers and polymers, their properties, structures, and functions, mainly since 2009, will also be described.
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Affiliation(s)
- Eiji Yashima
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University , Chikusa-ku, Nagoya 464-8603, Japan
| | - Naoki Ousaka
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University , Chikusa-ku, Nagoya 464-8603, Japan
| | - Daisuke Taura
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University , Chikusa-ku, Nagoya 464-8603, Japan
| | - Kouhei Shimomura
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University , Chikusa-ku, Nagoya 464-8603, Japan
| | - Tomoyuki Ikai
- Graduate School of Natural Science and Technology, Kanazawa University , Kakuma-machi, Kanazawa 920-1192, Japan
| | - Katsuhiro Maeda
- Graduate School of Natural Science and Technology, Kanazawa University , Kakuma-machi, Kanazawa 920-1192, Japan
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4
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Sunkari YK, Alam F, Kandiyal PS, Aloysius S, Ampapathi RS, Chakraborty TK. Influence of Linker Length on Conformational Preferences of Glycosylated Sugar Amino Acid Foldamers. Chembiochem 2016; 17:1839-1844. [DOI: 10.1002/cbic.201600386] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Indexed: 01/12/2023]
Affiliation(s)
- Yashoda Krishna Sunkari
- Department of Organic Chemistry; Indian Institute of Science, CV Raman Road; Bengaluru 560012 India
- Medicinal and Process Chemistry Division; CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road; Lucknow 226031 India
| | - Faiyaz Alam
- Centre for Nuclear Magnetic Resonance; SAIF; CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road; Lucknow 226031 India
| | - Pancham Singh Kandiyal
- Centre for Nuclear Magnetic Resonance; SAIF; CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road; Lucknow 226031 India
| | - Siriwardena Aloysius
- Laboratoire des Glucides (UMR 6912); CNRS-FRE-3517; Universit de Picardie Jules Verne, 33, Rue St Leu, Faculte des Sciences; Amiens 80039 France
| | - Ravi Sankar Ampapathi
- Centre for Nuclear Magnetic Resonance; SAIF; CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road; Lucknow 226031 India
| | - Tushar Kanti Chakraborty
- Department of Organic Chemistry; Indian Institute of Science, CV Raman Road; Bengaluru 560012 India
- Medicinal and Process Chemistry Division; CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road; Lucknow 226031 India
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5
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John F, Wittmann V. Orthogonally Protected Furanoid Sugar Diamino Acids for Solid-Phase Synthesis of Oligosaccharide Mimetics. J Org Chem 2015; 80:7477-85. [DOI: 10.1021/acs.joc.5b01049] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Franklin John
- Fachbereich
Chemie and Konstanz Research School Chemical Biology (KoRS-CB), Universität Konstanz, 78457 Konstanz, Germany
- Department
of Chemistry, Sacred Heart College (M. G. University), Kochi 682013, India
| | - Valentin Wittmann
- Fachbereich
Chemie and Konstanz Research School Chemical Biology (KoRS-CB), Universität Konstanz, 78457 Konstanz, Germany
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6
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Krishna Y, Sharma S, Ampapathi RS, Koley D. Furan-Based Locked Z-Vinylogous γ-Amino Acid Stabilizing Protein α-Turn in Water-Soluble Cyclic α3γ Tetrapeptides. Org Lett 2014; 16:2084-7. [DOI: 10.1021/ol5002126] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yarkali Krishna
- Medicinal and Process Chemistry
Division and ‡Centre for Nuclear Magnetic Resonance,
SAIF, CSIR-Central Drug Research Institute, Lucknow, Uttar Pradesh 226031, India
| | - Shrikant Sharma
- Medicinal and Process Chemistry
Division and ‡Centre for Nuclear Magnetic Resonance,
SAIF, CSIR-Central Drug Research Institute, Lucknow, Uttar Pradesh 226031, India
| | - Ravi S. Ampapathi
- Medicinal and Process Chemistry
Division and ‡Centre for Nuclear Magnetic Resonance,
SAIF, CSIR-Central Drug Research Institute, Lucknow, Uttar Pradesh 226031, India
| | - Dipankar Koley
- Medicinal and Process Chemistry
Division and ‡Centre for Nuclear Magnetic Resonance,
SAIF, CSIR-Central Drug Research Institute, Lucknow, Uttar Pradesh 226031, India
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7
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Ramesh VV, Priya G, Rajamohanan P, Hofmann HJ, Sanjayan GJ. Expanding the structural repertoire of β/α Ant-Pro (anthranilic acid-proline) oligomers into γ/α 2-Amb-Pro (2-aminomethyl benzoic acid-proline) oligomers. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.02.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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8
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Sharma GV, Reddy PS, Chatterjee D, Kunwar AC. Investigation of folding patterns in homo-oligomers of (R)-β2,2-amino acids with carbohydrate side chain. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.02.032] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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9
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Roy A, Prabhakaran P, Baruah PK, Sanjayan GJ. Diversifying the structural architecture of synthetic oligomers: the hetero foldamer approach. Chem Commun (Camb) 2011; 47:11593-611. [DOI: 10.1039/c1cc13313f] [Citation(s) in RCA: 106] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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10
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Baptiste B, Zhu J, Haldar D, Kauffmann B, Léger JM, Huc I. Hybridization of Long Pyridine-Dicarboxamide Oligomers into Multi-Turn Double Helices: Slow Strand Association and Dissociation, Solvent Dependence, and Solid State Structures. Chem Asian J 2010; 5:1364-75. [DOI: 10.1002/asia.200900713] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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11
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Bandyopadhyay A, Pahari AK, Chattopadhyay SK. A stereodivergent route to two epimeric 2-pyrrolidinylglycine derivatives. Tetrahedron Lett 2009. [DOI: 10.1016/j.tetlet.2009.08.030] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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