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Tarai A, Nath B. A review on oxime functionality: an ordinary functional group with significant impacts in supramolecular chemistry. Chem Commun (Camb) 2024; 60:7266-7287. [PMID: 38916274 DOI: 10.1039/d4cc01397b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/26/2024]
Abstract
The oxime functional group is pivotal in chemistry, finding extensive applications in medical science, catalysis, organic functional group transformations, and the recognition of essential and toxic analytes. While the coordination chemistry of oxime derivatives has been thoroughly explored and several reviews have been published on this topic in reputable journals, a comprehensive review encompassing various aspects such as crystal engineering, cation and anion recognition, as well as coordination chemistry activities, is still in demand. This feature article highlights the diverse applications of oxime derivatives across multiple domains of chemistry, including medicine, agriculture, crystal engineering, coordination chemistry, and molecular recognition studies. Each of the oxime derivatives in this feature article are meticulously described in terms of their medicinal applications, crop protection, crystal engineering attributes, analyte recognition capabilities, and coordination chemistry aspects. By providing a comprehensive overview of their versatile applications, this article aims to inspire researchers to explore and develop novel oxime-based derivatives for future applications.
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Affiliation(s)
- Arup Tarai
- School of Advanced Sciences and Languages (SASL), VIT Bhopal University, Bhopal-466114, Madya Pradesh, India.
| | - Bhaskar Nath
- Department of Educational Sciences, Assam University Silchar, Assam-788011, India.
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Pavlović G, Lekšić E, Meštrović E. Supramolecular synthons in hydrates and solvates of lamotrigine: a tool for cocrystal design. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2024; 80:193-200. [PMID: 38728045 PMCID: PMC11157341 DOI: 10.1107/s2052520624002567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Accepted: 03/18/2024] [Indexed: 06/09/2024]
Abstract
The molecule of anti-epileptic drug lamotrigine [LAM; 3,5-diamino-6-(2,3-dichlorophenyl)-1,2,4-triazine] is capable of the formation of multicomponent solids. Such an enhanced tendency is related to the diverse functionalities of the LAM chemical groups able to form hydrogen bonds. Two robust synthons are recognized in the supramolecular structure of LAM itself formed via N-H...N hydrogen bond: homosynthon, so-called aminopyridine dimer or synthon 1 [R22(8)] and larger homosynthon 2 [R32(8)]. The synthetic procedures for a new hydrate and 11 solvates of LAM (in the series: with acetone, ethanol: two polymorphs: form I and form II, 2-propanol, n-butanol, tert-butanol, n-pentanol, benzonitrile, acetonitrile, DMSO and dioxane) were performed. The comparative solid state structural analysis of a new hydrate and 11 solvates of LAM has been undertaken in order to establish robustness of the supramolecular synthons 1 and 2 found in the crystal structure of LAM itself as well as LAM susceptibility to build methodical solid state supramolecular architecture in the given competitive surrounding of potential hydrogen bonds. The aminopyridine dimer homosynthon 1 [R22(8)] has been switched from para-para (P-P) topology to ortho-ortho (O-O) topology in all crystal structures, except in LAM:n-pentanol:water solvate where it remains P-P. Homosynthon 2 [R32(8)] of the LAM crystal structure imitates in the LAM solvates as a heterosynthon by replacing the triazine nitrogen proton acceptor atoms of LAM with the proton acceptors of solvates molecules.
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Affiliation(s)
- Gordana Pavlović
- Department of Applied Chemistry, University of Zagreb Faculty of Textile Technology, Prilaz baruna Filipovića 28a, Zagreb, 10000, Croatia
| | - Edislav Lekšić
- Research and Development, PLIVA Croatia Ltd, Prilaz baruna Filipovića 29, Zagreb, 10000, Croatia
| | - Ernest Meštrović
- Department of General and Inorganic Chemistry, University of Zagreb Faculty of Chemical Engineering and Technology, Trg Marka Marulića 19, Zagreb, 10000, Croatia
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Jirát J, Rohlíček J, Kaminský J, Jirkal T, Ridvan L, Skořepová E, Zvoníček V, Dušek M, Šoóš M. Formation of ibrutinib solvates: so similar, yet so different. IUCRJ 2023; 10:210-219. [PMID: 36815712 PMCID: PMC9980385 DOI: 10.1107/s2052252523001197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 02/08/2023] [Indexed: 06/18/2023]
Abstract
The transformation processes of non-solvated ibrutinib into a series of halogenated benzene solvates are explored in detail here. The transformation was studied in real time by X-ray powder diffraction in a glass capillary. Crystal structures of chlorobenzene, bromobenzene and iodobenzene solvates are isostructural, whereas the structure of fluorobenzene solvate is different. Four different mechanisms for transformation were discovered despite the similarity in the chemical nature of the solvents and crystal structures of the solvates formed. These mechanisms include direct transformations and transformations with either a crystalline or an amorphous intermediate phase. The binding preference of each solvate in the crystal structure of the solvates was examined in competitive slurry experiments and further confirmed by interaction strength calculations. Overall, the presented system and online X-ray powder diffraction measurement provide unique insights into the formation of solvates.
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Affiliation(s)
- Jan Jirát
- Chemical Engineering, University of Chemistry and Technology in Prague, Technická 3, Praha, Czech Republic
- Zentiva, k.s., U kabelovny 130, Prague 10 10237, Czech Republic
| | - Jan Rohlíček
- Institute of Physics of the Czech Academy of Sciences, Na Slovance 2, Prague 8 182 00, Czech Republic
| | - Jakub Kaminský
- Institute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 542/2, Prague 6, Czech Republic
| | - Tomáš Jirkal
- Chemical Engineering, University of Chemistry and Technology in Prague, Technická 3, Praha, Czech Republic
| | - Luděk Ridvan
- Zentiva, k.s., U kabelovny 130, Prague 10 10237, Czech Republic
| | - Eliška Skořepová
- Chemical Engineering, University of Chemistry and Technology in Prague, Technická 3, Praha, Czech Republic
- Institute of Physics of the Czech Academy of Sciences, Na Slovance 2, Prague 8 182 00, Czech Republic
| | - Vít Zvoníček
- Zentiva, k.s., U kabelovny 130, Prague 10 10237, Czech Republic
| | - Michal Dušek
- Institute of Physics of the Czech Academy of Sciences, Na Slovance 2, Prague 8 182 00, Czech Republic
| | - Miroslav Šoóš
- Chemical Engineering, University of Chemistry and Technology in Prague, Technická 3, Praha, Czech Republic
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Gunawardana CA, Aakeröy CB. Co-crystal synthesis: fact, fancy, and great expectations. Chem Commun (Camb) 2018; 54:14047-14060. [DOI: 10.1039/c8cc08135b] [Citation(s) in RCA: 87] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Some strategies for driving co-crystal synthesis using a variety of competing non-covalent interactions are presented.
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Affiliation(s)
| | - C. B. Aakeröy
- Department of Chemistry
- Kansas State University
- Manhattan
- USA
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Siskos MG, Choudhary MI, Gerothanassis IP. Hydrogen Atomic Positions of O-H···O Hydrogen Bonds in Solution and in the Solid State: The Synergy of Quantum Chemical Calculations with ¹H-NMR Chemical Shifts and X-ray Diffraction Methods. Molecules 2017; 22:E415. [PMID: 28272366 PMCID: PMC6155303 DOI: 10.3390/molecules22030415] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Revised: 02/27/2017] [Accepted: 03/03/2017] [Indexed: 12/21/2022] Open
Abstract
The exact knowledge of hydrogen atomic positions of O-H···O hydrogen bonds in solution and in the solid state has been a major challenge in structural and physical organic chemistry. The objective of this review article is to summarize recent developments in the refinement of labile hydrogen positions with the use of: (i) density functional theory (DFT) calculations after a structure has been determined by X-ray from single crystals or from powders; (ii) ¹H-NMR chemical shifts as constraints in DFT calculations, and (iii) use of root-mean-square deviation between experimentally determined and DFT calculated ¹H-NMR chemical shifts considering the great sensitivity of ¹H-NMR shielding to hydrogen bonding properties.
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Affiliation(s)
- Michael G Siskos
- Section of Organic Chemistry & Biochemistry, Department of Chemistry, University of Ioannina, Ioannina GR-45110, Greece.
| | - M Iqbal Choudhary
- H.E.J. Research Institute of Chemistry, International Center for Biological and Chemical Sciences, University of Karachi, Karachi 75270, Pakistan.
| | - Ioannis P Gerothanassis
- Section of Organic Chemistry & Biochemistry, Department of Chemistry, University of Ioannina, Ioannina GR-45110, Greece.
- H.E.J. Research Institute of Chemistry, International Center for Biological and Chemical Sciences, University of Karachi, Karachi 75270, Pakistan.
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Shahbazi-Raz F, Notash B, Amani V, Safari N. 4,4′-Dimethyl-2,2′-bithiazole: Potent co-former in coordination compounds. Polyhedron 2016. [DOI: 10.1016/j.poly.2016.08.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Tarai A, Baruah JB. A study on fluoride detection and assembly of hydroxyaromatic aldoximes caused by tetrabutylammonium fluoride. CrystEngComm 2015. [DOI: 10.1039/c4ce02311k] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Different assemblies formed by the interactions of tetrabutylammonium fluoride with hydroxy-aromatic oximes show characteristic optical properties.
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Affiliation(s)
- Arup Tarai
- Department of Chemistry
- Indian Institute of Technology Guwahati
- Guwahati-781 039, India
| | - Jubaraj B. Baruah
- Department of Chemistry
- Indian Institute of Technology Guwahati
- Guwahati-781 039, India
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Aakeröy CB, Wijethunga TK, Desper J. Molecular electrostatic potential dependent selectivity of hydrogen bonding. NEW J CHEM 2015. [DOI: 10.1039/c4nj01324g] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A molecular electrostatic potential based approach for anticipating the outcome of hydrogen-bond interactions in a competitive scenario is described.
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Affiliation(s)
| | | | - John Desper
- Department of Chemistry
- Kansas State University
- Manhattan
- USA
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Aakeröy CB, Epa K, Forbes S, Schultheiss N, Desper J. Ranking Relative Hydrogen-Bond Strengths in Hydroxybenzoic Acids for Crystal-Engineering Purposes. Chemistry 2013; 19:14998-5003. [DOI: 10.1002/chem.201301402] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2013] [Revised: 07/26/2013] [Indexed: 11/12/2022]
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Ponomarova VV, Domasevitch KV. A three-component cocrystal: benzoyl(hydroxyimino)acetonitrile–18-crown-6–water (2/1/4). Acta Crystallogr C 2012; 68:o359-61. [DOI: 10.1107/s0108270112034208] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2012] [Accepted: 08/01/2012] [Indexed: 11/10/2022] Open
Abstract
In the title compound, 2C9H6N2O2·C12H24O6·4H2O, the 18-crown-6 (1,4,7,10,13,16-hexaoxacyclooctadecane) molecule resides across a centre of inversion. The adduct exists as a molecular hydrogen-bonded complex featuring integration of two kinds of synthons,viz.[(18-crown-6)(H2O)4] [O...O = 2.8645 (18)–2.9014 (18) Å] and an oxime/aqua ensemble, PhC(O)C(CN)NOH...OH2[O...O = 2.5930 (18) Å]. The reliability of the oxime/aqua motif, sustained by the highly acidic cyanooxime, is an essential factor in the construction of multicomponent cocrystals and the accommodation of oxime species in macrocyclic hosts. The supramolecular structure is generated by the alternation of hydrophilic [(18-crown-6)(H2O)4] layers and bilayers of benzoyl(hydroxyimino)acetonitrile molecules, resulting in stacking interactions between the phenyl and cyano groups of 3.666 (2) Å.
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Braga D, d'Agostino S, Dichiarante E, Maini L, Grepioni F. Dealing with Crystal Forms (The Kingdom of Serendip?). Chem Asian J 2011; 6:2214-23. [DOI: 10.1002/asia.201100084] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2011] [Indexed: 11/10/2022]
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Braga D, Grepioni F, Maini L, Prosperi S, Gobetto R, Chierotti MR. From unexpected reactions to a new family of ionic co-crystals: the case of barbituric acid with alkali bromides and caesium iodide. Chem Commun (Camb) 2010; 46:7715-7. [PMID: 20852785 DOI: 10.1039/c0cc02701d] [Citation(s) in RCA: 144] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Pressing solid barbituric acid with KBr to prepare samples for IR spectroscopy leads to the formation of an ionic co-crystal, in which the co-former is a classical ionic salt; co-crystal formation is also obtained with the other alkali bromides (LiBr, NaBr, RbBr and CsBr) and with caesium iodide. The simultaneous presence of alkali and halide ions affects the dissolution properties of barbituric acid in water.
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Affiliation(s)
- Dario Braga
- Dipartimento di Chimica G. Ciamician, Università degli Studi di Bologna, via Selmi 2, 40126 Bologna, Italy
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Aakeröy CB, Rajbanshi A, Li ZJ, Desper J. Mapping out the synthetic landscape for re-crystallization, co-crystallization and salt formation. CrystEngComm 2010. [DOI: 10.1039/c0ce00052c] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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