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Nergui N, Chen MJ, Wang JK, Wang YL, Hsing CR, Wei CM, Takahashi K. Dependence of Adenine Raman Spectrum on Excitation Laser Wavelength: Comparison between Experiment and Theoretical Simulations. J Phys Chem A 2016; 120:8114-8122. [PMID: 27689391 DOI: 10.1021/acs.jpca.6b08311] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We acquired the Raman spectra of adenine in powder and aqueous phase using excitation lasers with 532, 633, and 785 nm wavelengths for the region between 300 and 1500 cm-1. In comparison to the most distinct peak at 722 cm-1, the peaks between 1200 and 1500 cm-1 exhibited a characteristic increase in cross-section with decreasing excitation wavelength in both phases. This trend can be reproduced by different density functional theory (DFT) calculations for the adenine molecule in the gas phase as well as in the aqueous phase. Furthermore, from the calculation on the π-stacked dimer, hydrogen-bonded dimer, and trimer, we find that this trend toward excitation laser wavelength is not sensitive to the packing. When comparing the Raman spectra given by different excitation wavelength, one should take care in analyzing the cross-section, and present day DFT calculations are able to capture general trends in the excitation laser wavelength dependence of the Raman activity.
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Affiliation(s)
- Navchtsetseg Nergui
- Institute of Atomic and Molecular Sciences, Academia Sinica , PO Box 23-166, 10617 Taipei, Taiwan.,Department of Chemistry, National Taiwan University , 10617 Taipei, Taiwan.,Nano Science and Technology Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan University , 10617 Taipei, Taiwan
| | - Miin-Jang Chen
- Department of Materials Science and Engineering, National Taiwan University , 10617 Taipei, Taiwan
| | - Juen-Kai Wang
- Institute of Atomic and Molecular Sciences, Academia Sinica , PO Box 23-166, 10617 Taipei, Taiwan.,Center for Condensed Matter Sciences, National Taiwan University , 10617 Taipei, Taiwan
| | - Yuh-Lin Wang
- Institute of Atomic and Molecular Sciences, Academia Sinica , PO Box 23-166, 10617 Taipei, Taiwan.,Department of Physics, National Taiwan University , 10617 Taipei, Taiwan
| | - Cheng-Rong Hsing
- Institute of Atomic and Molecular Sciences, Academia Sinica , PO Box 23-166, 10617 Taipei, Taiwan
| | - Ching-Ming Wei
- Institute of Atomic and Molecular Sciences, Academia Sinica , PO Box 23-166, 10617 Taipei, Taiwan
| | - Kaito Takahashi
- Institute of Atomic and Molecular Sciences, Academia Sinica , PO Box 23-166, 10617 Taipei, Taiwan
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Chulhai DV, Hu Z, Moore JE, Chen X, Jensen L. Theory of Linear and Nonlinear Surface-Enhanced Vibrational Spectroscopies. Annu Rev Phys Chem 2016; 67:541-64. [PMID: 27090843 DOI: 10.1146/annurev-physchem-040215-112347] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The vibrational spectroscopy of molecules adsorbed on metal nanoparticles can be enhanced by many orders of magnitude so that the detection and identification of single molecules are possible. The enhancement of most linear and nonlinear vibrational spectroscopies has been demonstrated. In this review, we discuss theoretical approaches to understanding linear and nonlinear surface-enhanced vibrational spectroscopies. A unified description of enhancement mechanisms classified as either electromagnetic or chemical in nature is presented. Emphasis is placed on understanding the spectral changes necessary for interpretation of linear and nonlinear surface-enhanced vibrational spectroscopies.
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Affiliation(s)
- Dhabih V Chulhai
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
| | - Zhongwei Hu
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
| | - Justin E Moore
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
| | - Xing Chen
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
| | - Lasse Jensen
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
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Pawłowski F, Olsen J, Jørgensen P. Molecular response properties from a Hermitian eigenvalue equation for a time-periodic Hamiltonian. J Chem Phys 2015; 142:114109. [DOI: 10.1063/1.4913364] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Affiliation(s)
- Filip Pawłowski
- qLEAP Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, Langelandsgade 140, DK-8000 Aarhus C, Denmark
- Institute of Physics, Kazimierz Wielki University, Plac Weyssenhoffa 11, 85-072 Bydgoszcz, Poland
| | - Jeppe Olsen
- qLEAP Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, Langelandsgade 140, DK-8000 Aarhus C, Denmark
| | - Poul Jørgensen
- qLEAP Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, Langelandsgade 140, DK-8000 Aarhus C, Denmark
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Ringholm M, Jonsson D, Ruud K. A general, recursive, and open-ended response code. J Comput Chem 2014; 35:622-33. [DOI: 10.1002/jcc.23533] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2013] [Revised: 12/09/2013] [Accepted: 12/12/2013] [Indexed: 12/27/2022]
Affiliation(s)
- Magnus Ringholm
- Department of Chemistry; Centre for Theoretical and Computational Chemistry (CTCC), University of Tromsø-The Arctic University of Norway; N-9037 Tromsø Norway
| | - Dan Jonsson
- Department of Chemistry; Centre for Theoretical and Computational Chemistry (CTCC), University of Tromsø-The Arctic University of Norway; N-9037 Tromsø Norway
- High-Performance Computing Group; University of Tromsø-The Arctic University of Norway; N-9037 Tromsø Norway
| | - Kenneth Ruud
- Department of Chemistry; Centre for Theoretical and Computational Chemistry (CTCC), University of Tromsø-The Arctic University of Norway; N-9037 Tromsø Norway
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Thorvaldsen AJ, Gao B, Ruud K, Fedorovsky M, Zuber G, Hug W. Efficient Calculation of ROA Tensors with Analytical Gradients and Fragmentation. Chirality 2012; 24:1018-30. [DOI: 10.1002/chir.22090] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2012] [Accepted: 03/28/2012] [Indexed: 11/10/2022]
Affiliation(s)
- Andreas J. Thorvaldsen
- Centre for Theoretical and Computational Chemistry, Department of Chemistry; University of Tromsø; Tromsø Norway
| | - Bin Gao
- Centre for Theoretical and Computational Chemistry, Department of Chemistry; University of Tromsø; Tromsø Norway
| | - Kenneth Ruud
- Centre for Theoretical and Computational Chemistry, Department of Chemistry; University of Tromsø; Tromsø Norway
| | - Maxim Fedorovsky
- Department of Chemistry; University of Fribourg; Fribourg Switzerland
| | - Gérard Zuber
- Department of Chemistry; University of Fribourg; Fribourg Switzerland
| | - Werner Hug
- Department of Chemistry; University of Fribourg; Fribourg Switzerland
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Mohammed A, Ågren H, Ringholm M, Thorvaldsen AJ, Ruud K. Hyper Raman spectra calculated in a time-dependent Hartree–Fock method. Mol Phys 2012. [DOI: 10.1080/00268976.2012.659681] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Abdelsalam Mohammed
- a Department of CBRN Defence and Security , Swedish Defence Research Agency (FOI) , SE-901 82 Umeå Sweden
| | - Hans Ågren
- a Department of CBRN Defence and Security , Swedish Defence Research Agency (FOI) , SE-901 82 Umeå Sweden
| | - Magnus Ringholm
- b Centre for Theoretical and Computational Chemistry, Department of Chemistry , University of Tromsø , N-9037 Tromsø , Norway
| | - Andreas J. Thorvaldsen
- b Centre for Theoretical and Computational Chemistry, Department of Chemistry , University of Tromsø , N-9037 Tromsø , Norway
| | - Kenneth Ruud
- b Centre for Theoretical and Computational Chemistry, Department of Chemistry , University of Tromsø , N-9037 Tromsø , Norway
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Helgaker T, Coriani S, Jørgensen P, Kristensen K, Olsen J, Ruud K. Recent Advances in Wave Function-Based Methods of Molecular-Property Calculations. Chem Rev 2012; 112:543-631. [DOI: 10.1021/cr2002239] [Citation(s) in RCA: 463] [Impact Index Per Article: 38.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Trygve Helgaker
- Centre for Theoretical and Computational Chemistry, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway
| | - Sonia Coriani
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, Via Giorgieri 1, I-34127 Trieste, Italy
| | - Poul Jørgensen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Kasper Kristensen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Jeppe Olsen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Kenneth Ruud
- Centre for Theoretical and Computational Chemistry, Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway
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Bast R, Ekström U, Gao B, Helgaker T, Ruud K, Thorvaldsen AJ. The ab initio calculation of molecular electric, magnetic and geometric properties. Phys Chem Chem Phys 2011; 13:2627-51. [DOI: 10.1039/c0cp01647k] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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Ruud K, Thorvaldsen AJ. Theoretical approaches to the calculation of Raman optical activity spectra. Chirality 2010; 21 Suppl 1:E54-67. [PMID: 19750498 DOI: 10.1002/chir.20777] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
In this article, we will give a brief account of the different approaches that have been presented in the literature for calculating Raman optical activity (ROA) spectra by ab initio methods. We will also outline the general structure of a self-consistent-field-based approach for analytic calculations of ROA spectra, including also contributions from London orbitals. The use of London orbitals ensures that the relevant ROA parameters are gauge origin independent. We will also give an outlook on the future of ab initio calculations of Raman optical activity spectra.
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Affiliation(s)
- Kenneth Ruud
- Centre for Theoretical and Computational Chemistry, Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway.
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Coriani S, Kjærgaard T, Jørgensen P, Ruud K, Huh J, Berger R. An Atomic-Orbital-Based Lagrangian Approach for Calculating Geometric Gradients of Linear Response Properties. J Chem Theory Comput 2010. [DOI: 10.1021/ct900506c] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sonia Coriani
- Dipartimento di Scienze Chimiche, Università degli Studi di Trieste, via L. Giorgieri 1, I-34127 Trieste, Italy and Centre for Theoretical and Computational Chemistry, University of Oslo, P.O. Box 1033, N-0315, Blindern, Norway
| | | | | | - Kenneth Ruud
- Centre for Theoretical and Computational Chemistry (CTCC), Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway
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Botek E, d'Antuono P, Jacques A, Carion R, Champagne B, Maton L, Taziaux D, Habib-Jiwan JL. Theoretical and experimental investigation of the structural and spectroscopic properties of coumarin 343 fluoroionophores. Phys Chem Chem Phys 2010; 12:14172-87. [DOI: 10.1039/c003514a] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Mohammed A, Ågren H, Thorvaldsen AJ, Ruud K. Ab initio study of coherent anti-Stokes Raman scattering (CARS) of the 1,3,5-trinitro-1,3,5-triazacyclohexane (RDX) explosive. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2009.12.061] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Shcherbin D, Thorvaldsen AJ, Ruud K, Coriani S, Rizzo A. Analytic calculations of nonlinear mixed electric and magnetic frequency-dependent molecular properties using London atomic orbitals: Buckingham birefringence. Phys Chem Chem Phys 2009; 11:816-25. [DOI: 10.1039/b815752a] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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