1
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Strauss P, Nuti F, Quagliata M, Papini AM, Hurevich M. Accelerated solid-phase synthesis of glycopeptides containing multiple N-glycosylated sites. Org Biomol Chem 2023; 21:1674-1679. [PMID: 36385318 DOI: 10.1039/d2ob01886a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Peptide fragments of glycoproteins containing multiple N-glycosylated sites are essential biochemical tools not only to investigate protein-protein interactions but also to develop glycopeptide-based diagnostics and immunotherapy. However, solid-phase synthesis of glycopeptides containing multiple N-glycosylated sites is hampered by difficult couplings, which results in a substantial drop in yield. To increase the final yield, large amounts of reagents but also time-consuming steps are required. Therefore, we propose herein to utilize heating and stirring in combination with low-loading solid supports to set up an accelerated route to obtain, by an efficient High-Temperature Fast Stirring Peptide Synthesis (HTFS-PS), glycopeptides containing multiple N-glycosylated sites using equimolar excess of the precious glycosylated building blocks.
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Affiliation(s)
- Poriah Strauss
- The Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem, 91904, Israel.
| | - Francesca Nuti
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Chemistry "Ugo Schiff", University of Florence, 50019 Sesto Fiorentino, Italy.
| | - Michael Quagliata
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Chemistry "Ugo Schiff", University of Florence, 50019 Sesto Fiorentino, Italy.
| | - Anna Maria Papini
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Chemistry "Ugo Schiff", University of Florence, 50019 Sesto Fiorentino, Italy.
| | - Mattan Hurevich
- The Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem, 91904, Israel.
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2
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Yu LT, Hartgerink JD. Selective covalent capture of collagen triple helices with a minimal protecting group strategy. Chem Sci 2022; 13:2789-2796. [PMID: 35356674 PMCID: PMC8890135 DOI: 10.1039/d1sc06361h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Accepted: 02/14/2022] [Indexed: 11/21/2022] Open
Abstract
A minimal protecting group strategy is developed to allow selective covalent capture of collagen-like triple helices. This allows stabilization of this critical fold while preserving charge–pair interactions critical for biological applications.
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Affiliation(s)
- Le Tracy Yu
- Rice University, Department of Chemistry and Department of Bioengineering, Houston, TX 77005, USA
| | - Jeffrey D. Hartgerink
- Rice University, Department of Chemistry and Department of Bioengineering, Houston, TX 77005, USA
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3
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Gimenez D, Phelan A, Murphy CD, Cobb SL. Fengycin A Analogues with Enhanced Chemical Stability and Antifungal Properties. Org Lett 2021; 23:4672-4676. [PMID: 34077216 PMCID: PMC8289291 DOI: 10.1021/acs.orglett.1c01387] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Abstract
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Fengycins
are cyclic lipo-depsipeptides
produced by Bacillus spp. that display potent antifungal
properties but are chemically unstable. This instability has meant
that no total synthesis of any fengycin has been published. Here we
report the synthesis of fengycin A analogues that display enhanced
antifungal properties and chemical stability under both basic and
acidic conditions. The analogues prepared also demonstrate that the
fengycin core structure can be modified and simplified without the
loss of antifungal activity.
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Affiliation(s)
- Diana Gimenez
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Aoife Phelan
- School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Cormac D Murphy
- School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Steven L Cobb
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
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4
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Chithanna S, Vyasamudri S, Yang DY. Application of Dimedone Enamines as Protecting Groups for Amines and Peptides. Org Lett 2020; 22:2391-2395. [PMID: 32148048 DOI: 10.1021/acs.orglett.0c00586] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
A simple protocol for the protection of amines was realized through a base-catalyzed one-pot reaction of dimedone, β-nitroalkene, and amine. Employing this strategy, a variety of amines/amino acids were protected in excellent yields. These acid/base stable protected amines can be deprotected by either ethylene diamine or hydrazine hydrate under mild conditions. The practical application of this orthogonal protecting group was demonstrated by the synthesis of cyclic peptide melanotan II via SPPS.
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Affiliation(s)
- Sivanna Chithanna
- Department of Chemistry, Tunghai University, No. 1727, Sec. 4, Taiwan Boulevard, Xitun District, Taichung City, 40704 Taiwan, Republic of China
| | - Sameer Vyasamudri
- Department of Chemistry, Tunghai University, No. 1727, Sec. 4, Taiwan Boulevard, Xitun District, Taichung City, 40704 Taiwan, Republic of China
| | - Ding-Yah Yang
- Department of Chemistry, Tunghai University, No. 1727, Sec. 4, Taiwan Boulevard, Xitun District, Taichung City, 40704 Taiwan, Republic of China
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5
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Mir FM, Atmuri NDP, Bourguet CB, Fores JR, Hou X, Chemtob S, Lubell WD. Paired Utility of Aza-Amino Acyl Proline and Indolizidinone Amino Acid Residues for Peptide Mimicry: Conception of Prostaglandin F2α Receptor Allosteric Modulators That Delay Preterm Birth. J Med Chem 2019; 62:4500-4525. [PMID: 30932486 DOI: 10.1021/acs.jmedchem.9b00056] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Peptide mimicry employing a combination of aza-amino acyl proline and indolizidinone residues has been used to develop allosteric modulators of the prostaglandin F2α receptor. The systematic study of the N-terminal phenylacetyl moiety and the conformation and side chain functions of the central turn dipeptide residue has demonstrated the sensitive relationships between modulator activity and topology. Examination of aza-Gly-Pro and aza-Phe-Pro analogs 2a and 2b in a murine preterm labor model featuring treatment with lipopolysaccharide demonstrated their capacity to extend significantly (>20 h) the average time of delivery offering new prototypes for delaying premature birth.
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Affiliation(s)
- Fatemeh M Mir
- Département de Chimie , Université de Montréal , C.P. 6128 Succursale Centre-Ville , Montréal H3C 3J7 QC , Canada
| | - N D Prasad Atmuri
- Département de Chimie , Université de Montréal , C.P. 6128 Succursale Centre-Ville , Montréal H3C 3J7 QC , Canada
| | - Carine B Bourguet
- Département de Chimie , Université de Montréal , C.P. 6128 Succursale Centre-Ville , Montréal H3C 3J7 QC , Canada
| | - Jennifer Rodon Fores
- Département de Chimie , Université de Montréal , C.P. 6128 Succursale Centre-Ville , Montréal H3C 3J7 QC , Canada
| | - Xin Hou
- Centre Hospitalier Universitaire Sainte-Justine Research Center , Montréal H3T 1C5 , QC , Canada
| | - Sylvain Chemtob
- Centre Hospitalier Universitaire Sainte-Justine Research Center , Montréal H3T 1C5 , QC , Canada
| | - William D Lubell
- Département de Chimie , Université de Montréal , C.P. 6128 Succursale Centre-Ville , Montréal H3C 3J7 QC , Canada
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6
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Abstract
Synthetic mono-ADPr-peptides are useful for structural, biochemical, and proteomics studies. We describe here a protocol for the preparation of mono-ADPr-peptides based on a fairly standard Fmoc-based solid-phase synthesis. Phosphoribosylated precursor building blocks are introduced into the peptide chain on solid-phase and subsequently converted to ADPr-sites by chemical phosphorylation with adenosine phosphoramidite. Suitably protected phosphoribosylated glutamine, asparagine, and citrulline building blocks described in this protocol allow introduction of ADP-Gln, ADPr-Asn, and ADPr-Cit into peptide chains as demonstrated for three peptides. Trifunctional amino acids, for which base-sensitive side-chain protection is available, can be accommodated in the sequences flanking the ADPr-cites.
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Affiliation(s)
- Hans A V Kistemaker
- Gorlaeus Laboratories, Leiden Institute of Chemistry, Universiteit Leiden, Leiden, The Netherlands
| | - Jim Voorneveld
- Gorlaeus Laboratories, Leiden Institute of Chemistry, Universiteit Leiden, Leiden, The Netherlands
| | - Dmitri V Filippov
- Gorlaeus Laboratories, Leiden Institute of Chemistry, Universiteit Leiden, Leiden, The Netherlands.
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7
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NAKHAEI E, TAKEHARA K, SATO H, ZAI K, KISHIMURA A, MORI T, KATAYAMA Y. A Dual Alkylated Peptide-ligand Enhances Affinity to Human Serum Albumin. ANAL SCI 2018; 34:501-504. [DOI: 10.2116/analsci.17p614] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Elnaz NAKHAEI
- Graduate School of Systems Life Sciences, Kyushu University
| | - Ko TAKEHARA
- Department of Chemistry, Faculty of Science, Kyushu University
| | - Hikari SATO
- Graduate School of Systems Life Sciences, Kyushu University
| | - Khadijah ZAI
- Department of Applied Chemistry, Faculty of Engineering, Kyushu University
| | - Akihiro KISHIMURA
- Graduate School of Systems Life Sciences, Kyushu University
- Department of Applied Chemistry, Faculty of Engineering, Kyushu University
- Center for Future Chemistry, Kyushu University
- International Research Center for Molecular Systems, Kyushu University
| | - Takeshi MORI
- Graduate School of Systems Life Sciences, Kyushu University
- Department of Applied Chemistry, Faculty of Engineering, Kyushu University
- Center for Future Chemistry, Kyushu University
| | - Yoshiki KATAYAMA
- Graduate School of Systems Life Sciences, Kyushu University
- Department of Applied Chemistry, Faculty of Engineering, Kyushu University
- Center for Future Chemistry, Kyushu University
- International Research Center for Molecular Systems, Kyushu University
- Center for Advanced Medical Innovation, Kyushu University
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8
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Giri R, Manne SR, Dolai G, Paul A, Kalita T, Mandal B. FeCl 3-Mediated Side Chain Modification of Aspartic Acid- and Glutamic Acid-Containing Peptides on a Solid Support. ACS OMEGA 2017; 2:6586-6597. [PMID: 31457256 PMCID: PMC6644899 DOI: 10.1021/acsomega.7b01143] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Accepted: 09/18/2017] [Indexed: 06/10/2023]
Abstract
An efficient, convenient, and selective Lewis acid-based strategy for on-resin deprotection of the side chain tert-butyl-protected aspartic acid and glutamic acid of a peptide is achieved. The method is mild, cost-effective, and Fmoc chemistry compatible and allows on-resin incorporation of amides, esters, and thioesters in good yield. This method will find wide applicability in peptide and protein modification because it enriches the toolbox of orthogonal protection/deprotection techniques.
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9
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Treder AP, Hickey JL, Tremblay MCJ, Zaretsky S, Scully CCG, Mancuso J, Doucet A, Yudin AK, Marsault E. Solid-Phase Parallel Synthesis of Functionalised Medium-to-Large Cyclic Peptidomimetics through Three-Component Coupling Driven by Aziridine Aldehyde Dimers. Chemistry 2015; 21:9249-55. [PMID: 26014974 DOI: 10.1002/chem.201500068] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2015] [Indexed: 11/06/2022]
Abstract
The first solid-phase parallel synthesis of macrocyclic peptides using three-component coupling driven by aziridine aldehyde dimers is described. The method supports the synthesis of 9- to 18-membered aziridine-containing macrocycles, which are then functionalized by nucleophilic opening of the aziridine ring. This constitutes a robust approach for the rapid parallel synthesis of macrocyclic peptides.
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Affiliation(s)
- Adam P Treder
- Institut de Pharmacologie de Sherbrooke, Université de Sherbrooke, 3001, 12e av nord Sherbrooke (QC) J1H 5N4 (Canada)
| | - Jennifer L Hickey
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto (ON) M5S 3H6 (Canada)
| | - Marie-Claude J Tremblay
- Institut de Pharmacologie de Sherbrooke, Université de Sherbrooke, 3001, 12e av nord Sherbrooke (QC) J1H 5N4 (Canada)
| | - Serge Zaretsky
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto (ON) M5S 3H6 (Canada)
| | - Conor C G Scully
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto (ON) M5S 3H6 (Canada)
| | - John Mancuso
- Institut de Pharmacologie de Sherbrooke, Université de Sherbrooke, 3001, 12e av nord Sherbrooke (QC) J1H 5N4 (Canada)
| | - Annie Doucet
- Institut de Pharmacologie de Sherbrooke, Université de Sherbrooke, 3001, 12e av nord Sherbrooke (QC) J1H 5N4 (Canada)
| | - Andrei K Yudin
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto (ON) M5S 3H6 (Canada)
| | - Eric Marsault
- Institut de Pharmacologie de Sherbrooke, Université de Sherbrooke, 3001, 12e av nord Sherbrooke (QC) J1H 5N4 (Canada).
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10
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Li X, Li YL, Chen Y, Zou Y, Zhuo XB, Wu QY, Zhao QJ, Hu HG. A silver-promoted solid-phase guanidylation process enables the first total synthesis of stictamide A. RSC Adv 2015. [DOI: 10.1039/c5ra20976e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Abstract
First total synthesis of stictamide A, a structurally unique peptide with a statine motif and a N-prenyl modified arginine in the side chain, is disclosed with a novel silver-promoted solid-phase strategy for the first time.
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Affiliation(s)
- Xiang Li
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Yu-lei Li
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Yan Chen
- Department of Pharmacy
- General Hospital of Beijing Military Region
- Beijing 100700
- China
| | - Yan Zou
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Xiao-bin Zhuo
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Qiu-ye Wu
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Qing-jie Zhao
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Hong-gang Hu
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
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11
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Eskandari S, Stephenson RJ, Fuaad AA, Apte SH, Doolan DL, Toth I. Synthesis and Characterisation of Self-Assembled and Self-Adjuvanting Asymmetric Multi-Epitope Lipopeptides of Ovalbumin. Chemistry 2014; 21:1251-61. [DOI: 10.1002/chem.201404997] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2014] [Indexed: 01/25/2023]
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12
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Pan M, Li S, Li X, Shao F, Liu L, Hu HG. Synthesis of and Specific Antibody Generation for Glycopeptides with ArginineN-GlcNAcylation. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201407824] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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13
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Pan M, Li S, Li X, Shao F, Liu L, Hu HG. Synthesis of and Specific Antibody Generation for Glycopeptides with ArginineN-GlcNAcylation. Angew Chem Int Ed Engl 2014; 53:14517-21. [DOI: 10.1002/anie.201407824] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Revised: 09/13/2014] [Indexed: 12/23/2022]
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14
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Liu B, Zhang F, Zhang Y, Liu G. A new approach for the synthesis of O-glycopeptides through a combination of solid-phase glycosylation and fluorous tagging chemistry (SHGPFT). Org Biomol Chem 2014; 12:1892-6. [DOI: 10.1039/c3ob42430h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new and efficient hybrid approach has been developed for the synthesis and purification of O-linked glycopeptides with high purity.
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Affiliation(s)
- Bo Liu
- Institute of Materia Medica
- Chinese Academy of Medical Sciences & Peking Union Medical College
- Beijing 100050, P. R. China
| | - Fa Zhang
- Institute of Materia Medica
- Chinese Academy of Medical Sciences & Peking Union Medical College
- Beijing 100050, P. R. China
| | - Yan Zhang
- Institute of Materia Medica
- Chinese Academy of Medical Sciences & Peking Union Medical College
- Beijing 100050, P. R. China
| | - Gang Liu
- Institute of Materia Medica
- Chinese Academy of Medical Sciences & Peking Union Medical College
- Beijing 100050, P. R. China
- Tsinghua-Peking Center for Life Sciences
- Tsinghua University
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15
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Thompson RE, Collin F, Maxwell A, Jolliffe KA, Payne RJ. Synthesis of full length and truncated microcin B17 analogues as DNA gyrase poisons. Org Biomol Chem 2014; 12:1570-8. [DOI: 10.1039/c3ob42516a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Using a combination of solid-phase peptide synthesis and fragment assembly strategies a library of full-length and truncated analogues of the antibacterial post-translationally modified peptide microcin B17 have been synthesised. Both antibacterial and DNA gyrase poisoning activities are also described for the synthetic analogues.
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Affiliation(s)
| | - Frédéric Collin
- Department of Biological Chemistry
- John Innes Centre
- Norwich NR4 7UH, UK
| | - Anthony Maxwell
- Department of Biological Chemistry
- John Innes Centre
- Norwich NR4 7UH, UK
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16
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Capicciotti CJ, Trant JF, Leclère M, Ben RN. Synthesis of C-Linked Triazole-Containing AFGP Analogues and Their Ability to Inhibit Ice Recrystallization. Bioconjug Chem 2011; 22:605-16. [DOI: 10.1021/bc100394k] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Chantelle J. Capicciotti
- Department of Chemistry, D’Iorio Hall, 10 Marie Curie, University of Ottawa, Ottawa, Ontario, Canada, K1N 6N5
| | - John F. Trant
- Department of Chemistry, D’Iorio Hall, 10 Marie Curie, University of Ottawa, Ottawa, Ontario, Canada, K1N 6N5
| | - Mathieu Leclère
- Department of Chemistry, D’Iorio Hall, 10 Marie Curie, University of Ottawa, Ottawa, Ontario, Canada, K1N 6N5
| | - Robert N. Ben
- Department of Chemistry, D’Iorio Hall, 10 Marie Curie, University of Ottawa, Ottawa, Ontario, Canada, K1N 6N5
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17
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van der Heden van Noort GJ, van der Horst MG, Overkleeft HS, van der Marel GA, Filippov DV. Synthesis of mono-ADP-ribosylated oligopeptides using ribosylated amino acid building blocks. J Am Chem Soc 2010; 132:5236-40. [PMID: 20232863 DOI: 10.1021/ja910940q] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Adenosine diphosphate ribosylation (ADP-ribosylation) is a widely occurring post-translational modification of proteins at nucleophilic side chains of amino acid residues, such as asparagine, glutamic acid, and arginine. Elucidation of the biological role of ADP-ribosylation events would benefit from the availability of well-defined ADP-ribosylated peptides. Main issues in the construction of synthetic ADP-ribosylated peptides involve the availability of protected ribosylated amino acids suitable for peptide synthesis, development of a protective group strategy for peptide fragments compatible with the integrity of the adenosine diphosphate moiety, and an efficient procedure for pyrophosphate formation. In this paper we present a first approach to the chemical synthesis of ADP-ribosylated peptides in solution and on solid support. We describe an efficient synthesis of suitably protected ribosylated asparagine and glutamine building blocks suitable for Fmoc-based peptide synthesis. We further demonstrate a successful application of these ribosylated amino acids in the assembly of three fully synthetic ADP-ribosylated peptides by solution and solid phase approaches.
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18
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Conroy T, Jolliffe KA, Payne RJ. Synthesis of N-linked glycopeptides via solid-phase aspartylation. Org Biomol Chem 2010; 8:3723-33. [DOI: 10.1039/c003673k] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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