1
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Miyazaki M, Ono M, Otsuka R, Dopfer O, Fujii M. Electronic and vibrational spectroscopies of aromatic clusters with He in a supersonic jet: The case of neutral and cationic phenol-Hen (n = 1 and 2). J Chem Phys 2023; 159:134303. [PMID: 37787127 DOI: 10.1063/5.0169716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 09/15/2023] [Indexed: 10/04/2023] Open
Abstract
Van der Waals clusters composed of He and aromatic molecules provide fundamental information about intermolecular interactions in weakly bound systems. In this study, phenol-helium clusters (PhOH-Hen with n ≤ 2) are characterized for the first time by UV and IR spectroscopies. The S1 ← S0 origin and ionization energy both show small but additive shifts, suggesting π-bound structures of these clusters, a conclusion supported by rotational contour analyses of the S1 origin bands. The OH stretching vibrations of the PhOH moiety in the clusters match with those of bare PhOH in both the S0 and D0 states, illustrating the negligible perturbation of the He atoms on the molecular vibration. Matrix shifts induced by He attachment are discussed based on the observed band positions with the help of complementary quantum chemical calculations. For comparison, the UV and ionization spectra of PhOH-Ne are reported as well.
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Affiliation(s)
- Mitsuhiko Miyazaki
- Natural Science Division, Faculty of Core Research, Ochanomizu University, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, Japan
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Megumi Ono
- School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Remina Otsuka
- School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
- International Research Frontiers Initiative (IRFI), Institute of Innovation Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
- School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
- International Research Frontiers Initiative (IRFI), Institute of Innovation Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
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2
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Miyazaki M, Sakata Y, Ono M, Otsuka R, Ohara R, Dopfer O, Fujii M. Isomer-Selective Spectroscopy and Dynamics of Phenol-Ar n ( n ≤ 5) Clusters. J Phys Chem A 2021; 125:9969-9981. [PMID: 34761924 DOI: 10.1021/acs.jpca.1c04815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Structures and ionization-induced solvation dynamics of phenol-(argon)n clusters, PhOH-Arn (n ≤ 5), were studied by using a variety of isomer-selective photoionization and vibrational spectroscopic techniques. Several higher-energy isomers were found and assigned for the first time by systematically controlling the experimental conditions of the supersonic expansion. This behavior is also confirmed for the PhOH-Kr2 cluster. Solvation structures are elucidated by evaluating systematic shifts in the S1 ← S0 origin and ionization energies obtained by resonance-enhanced photoionization, in addition to the OH stretching frequency obtained by IR photodissociation. Isomer-selective picosecond time-resolved IR spectroscopy for the n = 2 clusters revealed that the dynamics for the ionization-induced intermolecular π → H site-switching reaction strongly depends on the initial isomeric structure. In particular, the reaction time for the (1|1) isomer is 7 ps, while that for (2|0) is <3 ps. This difference shows that the switching time is determined by the distance of the reaction coordinate between the initial π-site and the final OH-site.
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Affiliation(s)
- Mitsuhiko Miyazaki
- Natural Science Division, Faculty of Core Research, Ochanomizu University, Tokyo 112-8610, Japan.,Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Yuri Sakata
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Megumi Ono
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Remina Otsuka
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Ryuhei Ohara
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany.,World Research Hub Initiatives, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan.,World Research Hub Initiatives, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
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3
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Miyazaki M, Kamiya T, Wohlgemuth M, Chatterjee K, Mitrić R, Dopfer O, Fujii M. Real-time observation of photoionization-induced water migration dynamics in 4-methylformanilide-water by picosecond time-resolved infrared spectroscopy and ab initio molecular dynamics simulations. Phys Chem Chem Phys 2021; 24:73-85. [PMID: 34633007 DOI: 10.1039/d1cp03327a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
A novel time-resolved pump-probe spectroscopic approach that enables to keep high resolution in both the time and energy domain, nanosecond excitation-picosecond ionization-picosecond infrared probe (ns-ps-ps TRIR) spectroscopy, has been applied to the trans-4-methylformanilide-water (4MetFA-W) cluster. Water migration dynamics from the CO to the NH binding site in a peptide linkage triggered by photoionization of 4MetFA-W is directly monitored by the ps time evolution of IR spectra, and the presence of an intermediate state is revealed. The time evolution is analyzed by rate equations based on a four-state model of the migration dynamics. Time constants for the initial to the intermediate and hot product and to the final product are obtained. The acceleration of the dynamics by methyl substitution and the strong contribution of intracluster vibrational energy redistribution in the termination of the solvation dynamics is suggested. This picture is well confirmed by the ab initio on-the-fly molecular dynamics simulations. Vibrational assignments of 4MetFA and 4MetFA-W in the neutral (S0 and S1) and ionic (D0) electronic states measured by ns IR dip and electron-impact IR photodissociation spectroscopy are also discussed prior to the results of time-resolved spectroscopy.
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Affiliation(s)
- Mitsuhiko Miyazaki
- Natural Science Division, Faculty of Core Research, Ochanomizu University, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, Japan. .,Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Tairiku Kamiya
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Matthias Wohlgemuth
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg, 97074 Würzburg, Germany.
| | - Kuntal Chatterjee
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany.
| | - Roland Mitrić
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg, 97074 Würzburg, Germany.
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany. .,World Research Hub Initiatives, Institute of Innovative Research, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan.
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan.,World Research Hub Initiatives, Institute of Innovative Research, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan.
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4
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Fischer TL, Wagner T, Gottschalk HC, Nejad A, Suhm MA. A Rather Universal Vibrational Resonance in 1:1 Hydrates of Carbonyl Compounds. J Phys Chem Lett 2021; 12:138-144. [PMID: 33315407 DOI: 10.1021/acs.jpclett.0c03197] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
When the lower frequency OH stretching fundamental of a water molecule is shifted to the 3500 cm-1 spectral range by the solvation of a carbonyl compound, in this case a ketone, its infrared intensity is shared with a dark state. It is shown by chemical and isotope substitution for more than a dozen systems that the location of this resonance is remarkably substitution-independent. Harmonic and anharmonic model calculations support its assignment to a combination of the water bending overtone and in-plane water libration. This previously unrecognized intramolecular-intermolecular coupling in single solvent water has a strength of 7-10 cm-1. It may have been sporadically observed before in a few other carbonyl compounds such as amides, without any previous exploration of its potential universality. The resulting generic picosecond energy redistribution channel for aqueous solutions may represent a slow counterpart and doorway model of what happens on a subpicosecond time scale when the hydrogen bonds become stronger, such as in carboxylic acid dimers or protonated water clusters.
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Affiliation(s)
- Taija L Fischer
- Institute of Physical Chemistry, University of Göttingen, Tammannstr. 6, 37077 Göttingen, Germany
| | - Till Wagner
- Institute of Physical Chemistry, University of Göttingen, Tammannstr. 6, 37077 Göttingen, Germany
| | - Hannes C Gottschalk
- Institute of Physical Chemistry, University of Göttingen, Tammannstr. 6, 37077 Göttingen, Germany
| | - Arman Nejad
- Institute of Physical Chemistry, University of Göttingen, Tammannstr. 6, 37077 Göttingen, Germany
| | - Martin A Suhm
- Institute of Physical Chemistry, University of Göttingen, Tammannstr. 6, 37077 Göttingen, Germany
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5
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Gloaguen E, Mons M, Schwing K, Gerhards M. Neutral Peptides in the Gas Phase: Conformation and Aggregation Issues. Chem Rev 2020; 120:12490-12562. [PMID: 33152238 DOI: 10.1021/acs.chemrev.0c00168] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Combined IR and UV laser spectroscopic techniques in molecular beams merged with theoretical approaches have proven to be an ideal tool to elucidate intrinsic structural properties on a molecular level. It offers the possibility to analyze structural changes, in a controlled molecular environment, when successively adding aggregation partners. By this, it further makes these techniques a valuable starting point for a bottom-up approach in understanding the forces shaping larger molecular systems. This bottom-up approach was successfully applied to neutral amino acids starting around the 1990s. Ever since, experimental and theoretical methods developed further, and investigations could be extended to larger peptide systems. Against this background, the review gives an introduction to secondary structures and experimental methods as well as a summary on theoretical approaches. Vibrational frequencies being characteristic probes of molecular structure and interactions are especially addressed. Archetypal biologically relevant secondary structures investigated by molecular beam spectroscopy are described, and the influences of specific peptide residues on conformational preferences as well as the competition between secondary structures are discussed. Important influences like microsolvation or aggregation behavior are presented. Beyond the linear α-peptides, the main results of structural analysis on cyclic systems as well as on β- and γ-peptides are summarized. Overall, this contribution addresses current aspects of molecular beam spectroscopy on peptides and related species and provides molecular level insights into manifold issues of chemical and biochemical relevance.
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Affiliation(s)
- Eric Gloaguen
- CEA, CNRS, Université Paris-Saclay, CEA Paris-Saclay, Bât 522, 91191 Gif-sur-Yvette, France
| | - Michel Mons
- CEA, CNRS, Université Paris-Saclay, CEA Paris-Saclay, Bât 522, 91191 Gif-sur-Yvette, France
| | - Kirsten Schwing
- TU Kaiserslautern & Research Center Optimas, Erwin-Schrödinger-Straße 52, D-67663 Kaiserslautern, Germany
| | - Markus Gerhards
- TU Kaiserslautern & Research Center Optimas, Erwin-Schrödinger-Straße 52, D-67663 Kaiserslautern, Germany
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6
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Reactivity of CORM [RuII(CO)3Cl2{N-(N1-methylbenzimidazole)}] with aminoacids. Synthesis, and analytical and structural study for the new binuclear cis-[RuI(CO)2(N-MBI)(μ2-O,O-BAL)]2 sawhorse complex at solid state and in solution. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.02.051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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7
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Miyazaki M, Naito A, Ikeda T, Klyne J, Sakota K, Sekiya H, Dopfer O, Fujii M. Real-time observation of the photoionization-induced water rearrangement dynamics in the 5-hydroxyindole-water cluster by time-resolved IR spectroscopy. Phys Chem Chem Phys 2018; 20:3079-3091. [PMID: 29143839 DOI: 10.1039/c7cp06127g] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Solvation plays an essential role in controlling the mechanism and dynamics of chemical reactions in solution. The present study reveals that changes in the local solute-solvent interaction have a great impact on the timescale of solvent rearrangement dynamics. Time-resolved IR spectroscopy has been applied to a hydration rearrangement reaction in the monohydrated 5-hydroxyindole-water cluster induced by photoionization of the solute molecule. The water molecule changes the stable hydration site from the indolic NH site to the substituent OH site, both of which provide a strongly attractive potential for hydration. The rearrangement time constant amounts to 8 ± 2 ns, and is further slowed down by a factor of more than five at lower excess energy. These rearrangement times are slower by about three orders of magnitude than those reported for related systems where the water molecule is repelled from a repulsive part of the interaction potential toward an attractive well. The excess energy dependence of the time constant is well reproduced by RRKM theory. Differences in the reaction mechanism are discussed on the basis of energy relaxation dynamics.
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Affiliation(s)
- Mitsuhiko Miyazaki
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan.
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8
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Klyne J, Schmies M, Miyazaki M, Fujii M, Dopfer O. Stepwise microhydration of aromatic amide cations: water solvation networks revealed by the infrared spectra of acetanilide +-(H 2O) n clusters (n ≤ 3). Phys Chem Chem Phys 2018; 20:3148-3164. [PMID: 28913535 DOI: 10.1039/c7cp04659f] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The structure and activity of peptides and proteins strongly rely on their charge state and the interaction with their hydration environment. Here, infrared photodissociation (IRPD) spectra of size-selected microhydrated clusters of cationic acetanilide (AA+, N-phenylacetamide), AA+-(H2O)n with n ≤ 3, are analysed by dispersion-corrected density functional theory calculations at the ωB97X-D/aug-cc-pVTZ level to determine the stepwise microhydration process of this aromatic peptide model. The IRPD spectra are recorded in the informative X-H stretch (νOH, νNH, νCH, amide A, 2800-3800 cm-1) and fingerprint (amide I-II, 1000-1900 cm-1) ranges to probe the preferred hydration motifs and the cluster growth. In the most stable AA+-(H2O)n structures, the H2O ligands solvate the acidic NH proton of the amide by forming a hydrogen-bonded solvent network, which strongly benefits from cooperative effects arising from the excess positive charge. Comparison with neutral AA-H2O reveals the strong impact of ionization on the acidity of the NH proton and the topology of the interaction potential. Comparison with related hydrated formanilide clusters demonstrates the influence of methylation of the amide group (H → CH3) on the shape of the intermolecular potential and the structure of the hydration shell.
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Affiliation(s)
- Johanna Klyne
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
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9
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The computational analysis and modelling of substitution effects on hydrolysis of formanilides in acidic aqueous solutions. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.08.069] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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10
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Yatsyna V, Bakker DJ, Feifel R, Rijs AM, Zhaunerchyk V. Far-infrared amide IV-VI spectroscopy of isolated 2- and 4-Methylacetanilide. J Chem Phys 2017; 145:104309. [PMID: 27634262 DOI: 10.1063/1.4962360] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Delocalized molecular vibrations in the far-infrared and THz ranges are highly sensitive to the molecular structure, as well as to intra- and inter-molecular interactions. Thus, spectroscopic studies of biomolecular structures can greatly benefit from an extension of the conventional mid-infrared to the far-infrared wavelength range. In this work, the conformer-specific gas-phase far-infrared spectra of two aromatic molecules containing the peptide -CO-NH- link, namely, 2- and 4-Methylacetanilide, are investigated. The planar conformations with trans configuration of the peptide link have only been observed in the supersonic-jet expansion. The corresponding far-infrared signatures associated with the vibrations of the peptide -CO-NH- moiety, the so-called amide IV-VI bands, have been assigned and compared with the results of density functional theory frequency calculations based on the anharmonic vibrational second-order perturbation theory approach. The analysis of the experimental and theoretical data shows that the amide IV-VI bands are highly diagnostic for the geometry of the peptide moiety and the molecular backbone. They are also strongly blue-shifted upon formation of the NH⋯O-C hydrogen bonding, which is, for example, responsible for the formation of secondary protein structures. Furthermore, the amide IV-VI bands are also diagnostic for the cis configuration of the peptide link, which can be present in cyclic peptides. The experimental gas-phase data presented in this work can assist the vibrational assignment of similar biologically important systems, either isolated or in natural environments.
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Affiliation(s)
- Vasyl Yatsyna
- Department of Physics, University of Gothenburg, 412 96 Gothenburg, Sweden
| | - Daniël J Bakker
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernoovield 7-c, 6525 ED Nijmegen, The Netherlands
| | - Raimund Feifel
- Department of Physics, University of Gothenburg, 412 96 Gothenburg, Sweden
| | - Anouk M Rijs
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernoovield 7-c, 6525 ED Nijmegen, The Netherlands
| | - Vitali Zhaunerchyk
- Department of Physics, University of Gothenburg, 412 96 Gothenburg, Sweden
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11
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Zhang D, Blodgett KN, Zhu X, Zwier TS. Single Conformation Spectroscopy of Suberoylanilide Hydroxamic Acid: A Molecule Bites Its Tail. J Phys Chem A 2017; 121:986-997. [PMID: 28071906 DOI: 10.1021/acs.jpca.6b12464] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Suberoylanilide hydroxamic acid (SAHA) is a histone deacetylase inhibitor that causes growth arrest and differentiation of many tumor types and is an approved drug for the treatment of cancer. The chemical structure of SAHA consists of formanilide "head" and a hydroxamic acid "tail" separated by an n-hexyl chain, C6H5NH(C═O)-(CH2)6-(C═O)NHOH. The alkyl chain's preference for extended structures is in competition with tail-to-head (T-H) or head-to-tail (H-T) hydrogen bonds between the amide and hydroxamic acid groups. Laser desorption was used to bring SAHA into the gas phase and cool it in a supersonic expansion before interrogation with mass-resolved resonant two-photon ionization spectroscopy. Single conformation UV spectra in the S0-S1 region and infrared spectra in the hydride stretch and mid-IR regions were recorded using IR-UV hole-burning and resonant ion-dip infrared spectroscopy, respectively. Three conformers of SAHA were distinguished and spectroscopically characterized. Comparison of the experimental IR spectra with the predictions of density functional theory calculations (DFT, B3LYP D3BJ/6-31+G(d)) leads to assignments for the three conformers, all of which possess tightly folded alkyl chains that enable formation of a T-H (conformer A) or H-T (conformers B and C) hydrogen bonds. A modified version of the generalized Amber force field was developed to more accurately describe the hydroxamic acid OH internal rotor potential, leading to predictions for the relative energies in reasonable agreement with experiment. This force field was used to generate a disconnectivity graph for the low-energy portion of the potential energy landscape of SAHA. This disconnectivity graph contains more than one hundred minima and maps out the lowest-energy pathways between them, which could then be characterized via DFT calculations. This combination of force field and DFT calculations provides insight into the potential energy landscape and how population was funneled into the three observed conformers.
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Affiliation(s)
| | - Karl N Blodgett
- Department of Chemistry, Purdue University , West Lafayette, Indiana 47907-2084, United States
| | - Xiao Zhu
- Department of Chemistry, Purdue University , West Lafayette, Indiana 47907-2084, United States.,Rosen Center for Advanced Computing (RCAC), Purdue University , West Lafayette, Indiana 47907-2084, United States
| | - Timothy S Zwier
- Department of Chemistry, Purdue University , West Lafayette, Indiana 47907-2084, United States
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12
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Min A, Ahn A, Moon CJ, Lee JH, Seong YG, Kim SK, Choi MY. Conformational structures of jet-cooled acetaminophen-water clusters: a gas phase spectroscopic and computational study. Phys Chem Chem Phys 2017; 19:4840-4848. [PMID: 28134364 DOI: 10.1039/c6cp06863d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Jet-cooled acetaminophen (AAP)-water clusters, AAP-(H2O)1, were investigated by mass-selected resonant two-photon ionization (R2PI), ultraviolet-ultraviolet hole-burning (UV-UV HB), infrared-dip (IR-dip), and infrared-ultraviolet hole-burning (IR-UV HB) spectroscopy. Each syn- and anti-AAP rotamer has three distinctive binding sites (-OH, >CO, and >NH) for a water molecule, thus 6 different AAP-(H2O)1 conformers are expected to exist in the molecular beam. The origin bands of the AAP(OH)-(H2O)1 and AAP(CO)-(H2O)1 conformers (including their syn- and anti-conformers) in the R2PI spectrum are shifted to red and blue compared to those of the AAP monomer, respectively. These frequency shifts upon complexation between a water molecule and a specific binding site of AAP are also predicted by theoretical calculations. The spectral assignments of the origin bands in the R2PI spectra and the IR vibrational bands in the IR-dip spectra of the four lowest-energy conformers of AAP-(H2O)1, [syn- and anti-AAP(OH)-(H2O)1 and syn- and anti-AAP(CO)-(H2O)1], are aided by ab initio and time-dependent density functional theory (TDDFT) calculations. Further investigation of the IR-dip spectra has revealed a hydrogen-bonded NH stretching mode, supporting the presence of the syn-AAP(NH)-(H2O)1 conformer. Moreover, by employing IR-UV HB spectroscopy, we have reconfirmed the existence of the syn-AAP(NH)-(H2O)1 conformer, which happened to be buried underneath the broad background contributed by the AAP(OH)-(H2O)1 conformers. These observations have led us to conclude that all of the possible conformers of AAP-(H2O)1 have been found in this study.
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Affiliation(s)
- Ahreum Min
- Department of Chemistry (BK21+) and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, Republic of Korea.
| | - Ahreum Ahn
- Department of Chemistry (BK21+) and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, Republic of Korea.
| | - Cheol Joo Moon
- Department of Chemistry (BK21+) and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, Republic of Korea.
| | - Ji Hoon Lee
- Department of Chemistry (BK21+) and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, Republic of Korea.
| | - Yeon Guk Seong
- Department of Chemistry (BK21+) and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, Republic of Korea.
| | - Seong Keun Kim
- Department of Chemistry, Seoul National University, Seoul 08826, Republic of Korea.
| | - Myong Yong Choi
- Department of Chemistry (BK21+) and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, Republic of Korea.
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13
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Miyazaki M, Fujii M. A structural study on the excimer state of an isolated benzene dimer using infrared spectroscopy in the skeletal vibration region. Phys Chem Chem Phys 2017; 19:22759-22776. [DOI: 10.1039/c7cp03480f] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
IR spectroscopy on an isolated benzene excimer reveals that both the electronic and vibrational excitations are in resonance.
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Affiliation(s)
- Mitsuhiko Miyazaki
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
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14
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Forsting T, Gottschalk HC, Hartwig B, Mons M, Suhm MA. Correcting the record: the dimers and trimers of trans-N-methylacetamide. Phys Chem Chem Phys 2017; 19:10727-10737. [DOI: 10.1039/c6cp07989j] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Raman jet spectroscopy reveals three N-methylacetamide molecules organizing into a ring structure, previously overlooked in computations.
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Affiliation(s)
- Thomas Forsting
- Institut für Physikalische Chemie
- Universität Göttingen
- 37077 Göttingen
- Germany
| | | | - Beppo Hartwig
- Institut für Physikalische Chemie
- Universität Göttingen
- 37077 Göttingen
- Germany
| | - Michel Mons
- LIDYL; CEA
- CNRS
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Martin A. Suhm
- Institut für Physikalische Chemie
- Universität Göttingen
- 37077 Göttingen
- Germany
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15
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Paul Reddy K, Jaiswal K, Satpati B, Selvaraju C, Murugadoss A. High yield synthesis of branched gold nanoparticles as excellent catalysts for the reduction of nitroarenes. NEW J CHEM 2017. [DOI: 10.1039/c7nj02056b] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Acetanilide was used for the synthesis of high quality branched gold NPs exhibiting outstanding catalytic activity toward nitroarenes' reduction.
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Affiliation(s)
- Kalvakunta Paul Reddy
- National Centre for Nanosceince and Nanotechnology
- Guindy Campus
- University of Madras
- Chennai – 600025
- India
| | - Kanishk Jaiswal
- National Centre for Nanosceince and Nanotechnology
- Guindy Campus
- University of Madras
- Chennai – 600025
- India
| | - Biwarup Satpati
- Surface Physics and Material Science Division
- Saha Institute of Nuclear Physics
- Kolkata – 700064
- India
| | - C. Selvaraju
- National Centre for Ultrafast Process
- Taramani Campus
- University of Madras
- Chennai – 600113
- India
| | - Arumugam Murugadoss
- National Centre for Nanosceince and Nanotechnology
- Guindy Campus
- University of Madras
- Chennai – 600025
- India
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16
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Saigusa H, Nakamura D, Urashima SH. Hydrogen-bonding interactions of uric acid complexes with water/melamine by mid-infrared spectroscopy. Phys Chem Chem Phys 2015; 17:23026-33. [PMID: 26271289 DOI: 10.1039/c5cp03494a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydrogen (H)-bonding interactions of uric acid (UA) with water have been investigated via IR-UV double resonance measurements in the mid-IR region. Comparison of the present results with those obtained previously in the near-IR region enables us to examine microscopic hydration effects that are specific to the H-bonding acceptor sites of UA. It is shown that hydration of the C8O site promotes the mode coupling of this stretch with the C2O stretch. The occurrence of this coupling is manifested in the IR intensity pattern, in which the transition associated with the in-phase contribution C8O + C2O is significantly suppressed, whereas the corresponding out-of-phase contribution gives rise to a strong peak. We also measured the mid-IR spectra of the 1 : 1 complex formed between UA and melamine (MEL) and carried out a structural analysis using the spectroscopic signature of the H-bonding derived from the result of the monohydrated cluster. It is shown that the complex possesses a triple H-bonding structure with the C2O acceptor site of UA H-bonded to MEL. Furthermore, the IR-depleted UV spectroscopy technique was employed in order to ascertain whether other structural isomers are present in the probe UV spectra.
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Affiliation(s)
- Hiroyuki Saigusa
- Graduate School for Bio- and Nanosystem Sciences, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama 236-0027, Japan.
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17
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Klyne J, Schmies M, Fujii M, Dopfer O. Stepwise Microhydration of Aromatic Amide Cations: Formation of Water Solvation Network Revealed by Infrared Spectra of Formanilide+–(H2O)n Clusters (n ≤ 5). J Phys Chem B 2015; 119:1388-406. [DOI: 10.1021/jp511421h] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Johanna Klyne
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Matthias Schmies
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Masaaki Fujii
- Chemical
Resources Laboratory, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Otto Dopfer
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
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18
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Ishizuki H, Taira T. Improvement of laser-beam distortion in large-aperture PPMgLN device by using X-axis Czochralski-grown crystal. OPTICS EXPRESS 2014; 22:19668-73. [PMID: 25321050 DOI: 10.1364/oe.22.019668] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Large-aperture periodically poled Mg-doped LiNbO3 device using X-axis Czochralski-grown MgLN crystal was proposed to avoid a laser-beam distortion problem. Availability of periodic poling in 5-mm-thick MgLN and compatibility of wavelength-conversion characteristics in QPM-OPO were evaluated by comparing with conventional arrangement using Z-axis-grown crystal.
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19
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Klyne J, Schmies M, Dopfer O. Microsolvation of the Formanilide Cation (FA+) in a Nonpolar Solvent: Infrared Spectra of FA+–Ln Clusters (L = Ar, N2; n ≤ 8). J Phys Chem B 2014; 118:3005-17. [DOI: 10.1021/jp5011988] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Johanna Klyne
- Institut für Optik
und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse
36, 10623 Berlin, Germany
| | - Matthias Schmies
- Institut für Optik
und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse
36, 10623 Berlin, Germany
| | - Otto Dopfer
- Institut für Optik
und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse
36, 10623 Berlin, Germany
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20
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Schmies M, Patzer A, Schütz M, Miyazaki M, Fujii M, Dopfer O. Microsolvation of the acetanilide cation (AA+) in a nonpolar solvent: IR spectra of AA+–Lnclusters (L = He, Ar, N2; n ≤ 10). Phys Chem Chem Phys 2014; 16:7980-95. [DOI: 10.1039/c4cp00401a] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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21
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Sakota K, Harada S, Sekiya H. Infrared spectroscopy of hydrated N-(2-phenylethyl)acetamide clusters: The electron-redistribution within the solute weakens local hydrogen bond. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.01.020] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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22
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Miyazaki M, Kawanishi A, Nielsen I, Alata I, Ishiuchi SI, Dedonder C, Jouvet C, Fujii M. Ground State Proton Transfer in Phenol–(NH3)n (n ≤ 11) Clusters Studied by Mid-IR Spectroscopy in 3–10 μm Range. J Phys Chem A 2013; 117:1522-30. [DOI: 10.1021/jp312074m] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Mitsuhiko Miyazaki
- Chemical Spectroscopy Division,
Chemical Resources Laboratory, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Ayako Kawanishi
- Chemical Spectroscopy Division,
Chemical Resources Laboratory, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Iben Nielsen
- Institut des Sciences Moléculaires
d’Orsay and Centre Laser de l’Université Paris
Sud, Université Paris-Sud 11, 91405
Orsay Cedex, France
| | - Ivan Alata
- Institut des Sciences Moléculaires
d’Orsay and Centre Laser de l’Université Paris
Sud, Université Paris-Sud 11, 91405
Orsay Cedex, France
| | - Shun-ichi Ishiuchi
- Chemical Spectroscopy Division,
Chemical Resources Laboratory, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Claude Dedonder
- Institut des Sciences Moléculaires
d’Orsay and Centre Laser de l’Université Paris
Sud, Université Paris-Sud 11, 91405
Orsay Cedex, France
- PIIM−UMR
CNRS 7345, Aix Marseille Université, Avenue Escadrille
Normandie-Niémen, 13397 Marseille Cedex 20, France
| | - Christophe Jouvet
- Institut des Sciences Moléculaires
d’Orsay and Centre Laser de l’Université Paris
Sud, Université Paris-Sud 11, 91405
Orsay Cedex, France
- PIIM−UMR
CNRS 7345, Aix Marseille Université, Avenue Escadrille
Normandie-Niémen, 13397 Marseille Cedex 20, France
| | - Masaaki Fujii
- Chemical Spectroscopy Division,
Chemical Resources Laboratory, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
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23
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Sohn WY, Ishiuchi SI, Miyazaki M, Kang J, Lee S, Min A, Choi MY, Kang H, Fujii M. Conformationally resolved spectra of acetaminophen by UV-UV hole burning and IR dip spectroscopy in the gas phase. Phys Chem Chem Phys 2013. [PMID: 23207427 DOI: 10.1039/c2cp43552g] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Electronic and vibrational spectra of acetaminophen were measured by using UV-UV hole burning (HB) and IR dip spectroscopy. HB spectra show the coexistence of 4 different species, which include two new ones. Low-frequency transitions in the spectra are reproduced by a one-dimensional periodic potential with a free-rotor basis set for the methyl group. From the analysis, we concluded that acetaminophen has two conformers and each conformer gives two independent transitions starting from the most stable 0a(1) and the hot 1e internal rotational levels. It is also found that the HB spectrum of the trans-conformer in the previous report is that from the 1e excited level, while the HB spectrum of the cis-conformer is contaminated by the transitions of the trans-conformer. Potential curves of the methyl rotational motion are determined both in S(0) and S(1).
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Affiliation(s)
- Woon Yong Sohn
- Chemical Resources Laboratory, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
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24
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Leiras S, Freire F, Seco JM, Quiñoá E, Riguera R. Controlled modulation of the helical sense and the elongation of poly(phenylacetylene)s by polar and donor effects. Chem Sci 2013. [DOI: 10.1039/c3sc50835h] [Citation(s) in RCA: 90] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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25
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Weiler M, Nakamura T, Sekiya H, Dopfer O, Miyazaki M, Fujii M. Ionization-Induced Solvent Migration in Acetanilide-Methanol Clusters Inferred from Isomer-Selective Infrared Spectroscopy. Chemphyschem 2012; 13:3875-81. [DOI: 10.1002/cphc.201200704] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2012] [Revised: 10/02/2012] [Indexed: 01/02/2023]
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26
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Marochkin II, Dorofeeva OV. Molecular structure and relative stability of trans and cis isomers of formanilide: gas-phase electron diffraction and quantum chemical studies. Struct Chem 2012. [DOI: 10.1007/s11224-012-0071-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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27
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Miyazaki M, Makara K, Ishiuchi SI, Fujii M. Gas-phase Infrared Spectroscopy of Monopeptides from 10 to 3 µm. CHEM LETT 2011. [DOI: 10.1246/cl.2011.1157] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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28
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Sakota K, Harada S, Shimazaki Y, Sekiya H. Photoionization-Induced Water Migration in the Amide Group of trans-Acetanilide-(H2O)1 in the Gas Phase. J Phys Chem A 2011; 115:626-30. [DOI: 10.1021/jp111737y] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kenji Sakota
- Department of Chemistry, Faculty of Sciences, and Department of Molecular Chemistry, Graduate School of Science, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
| | - Satoshi Harada
- Department of Chemistry, Faculty of Sciences, and Department of Molecular Chemistry, Graduate School of Science, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
| | - Yuiga Shimazaki
- Department of Chemistry, Faculty of Sciences, and Department of Molecular Chemistry, Graduate School of Science, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
| | - Hiroshi Sekiya
- Department of Chemistry, Faculty of Sciences, and Department of Molecular Chemistry, Graduate School of Science, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
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29
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Sakota K, Shimazaki Y, Sekiya H. Entropy-driven rearrangement of the water network at the hydrated amide group of the trans-formanilide–water cluster in the gas phase. Phys Chem Chem Phys 2011; 13:6411-5. [DOI: 10.1039/c0cp02836c] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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30
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Cockett MCR, Miyazaki M, Tanabe K, Fujii M. Isomer selective IR-UV depletion spectroscopy of 4-fluorotoluene-NH3: evidence for π-proton-acceptor and linear hydrogen-bonded complexes. Phys Chem Chem Phys 2011; 13:15633-8. [DOI: 10.1039/c1cp21545k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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