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Matsuoka R, Himori S, Yamaguchi G, Nabeshima T. Kinetic and Thermodynamic Behaviors of Pseudorotaxane Formation with C3v Macrocyclic BODIPY Trimers and the Remarkable Substituent Effect on Ring-Face Selectivity. Org Lett 2020; 22:8764-8768. [PMID: 32975422 DOI: 10.1021/acs.orglett.0c02840] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The thermodynamic and kinetic behaviors of the pseudorotaxane formation between the C3v macrocyclic BODIPY trimers and unsymmetrical secondary ammonium guests are investigated. We find a remarkable substituent effect of the BODIPY trimer on the ring-face selectivity during the threading. The difference in the small substituents (H or CH3) in the macrocyclic host molecules significantly modulated the thermodynamic and kinetic selectivity of the threading direction of the unsymmetrical ammonium ions.
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Affiliation(s)
- Ryota Matsuoka
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Sou Himori
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Gento Yamaguchi
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Tatsuya Nabeshima
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
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2
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Exploring and Exploiting the Symmetry-Breaking Effect of Cyclodextrins in Mechanomolecules. Symmetry (Basel) 2019. [DOI: 10.3390/sym11101249] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Cyclodextrins (CDs) are cone-shaped molecular rings that have been widely employed in supramolecular/host–guest chemistry because of their low cost, high biocompatibility, stability, wide availability in multiple sizes, and their promiscuity for binding a range of molecular guests in water. Consequently, CD-based host–guest complexes are often employed as templates for the synthesis of mechanically bonded molecules (mechanomolecules) such as catenanes, rotaxanes, and polyrotaxanes in particular. The conical shape and cyclodirectionality of the CD “bead” gives rise to a symmetry-breaking effect when it is threaded onto a molecular “string”; even symmetrical guests are rendered asymmetric by the presence of an encircling CD host. This review focuses on the stereochemical implications of this symmetry-breaking effect in mechanomolecules, including orientational isomerism, mechanically planar chirality, and topological chirality, as well as how they support applications in regioselective and stereoselective chemical synthesis, the design of molecular machine prototypes, and the development of advanced materials.
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Hashidzume A, Yamaguchi H, Harada A. Cyclodextrin-Based Rotaxanes: from Rotaxanes to Polyrotaxanes and Further to Functional Materials. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900090] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Akihito Hashidzume
- Graduate School of Science; Osaka Univerisy; 1-1 Machikaneyama-cho Toyonaka, Osaka 560-0043 Japan
| | - Hiroyasu Yamaguchi
- Graduate School of Science; Osaka Univerisy; 1-1 Machikaneyama-cho Toyonaka, Osaka 560-0043 Japan
| | - Akira Harada
- Graduate School of Science; Osaka Univerisy; 1-1 Machikaneyama-cho Toyonaka, Osaka 560-0043 Japan
- Current address: The Institute of Scientific and Industrial Research; Osaka University; 8-1 Mihogaoka Ibaraki, Osaka 567-0047 Japan
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Li KA, Wang Z, Xie CD, Chen T, Qiang H, Liu YA, Jia XS, Hu WB, Wen K. Unidirectional complexation of pillar[4]arene[1]benzoquinoneoxime with alkyl alcohols. Org Biomol Chem 2019; 17:4975-4978. [DOI: 10.1039/c9ob00665f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Unidirectional binding between a pillar[4]arene[1]benzoquinoneoxime host and n-alkyl alcoholic guests was realized with the hydroxy heads of the guests in direct contact with the oxime group of the macrocyclic host.
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Affiliation(s)
- Kun-Ang Li
- Department of Chemistry
- Shanghai University
- Shanghai 20044
- P.R. China
- Shanghai Advanced Research Institute
| | - Zhuo Wang
- School of Physical Science and Technology
- ShanghaiTech University
- Shanghai 201210
- China
- Shanghai Advanced Research Institute
| | - Chang-Dong Xie
- Shanghai Advanced Research Institute
- Chinese Academy of Science
- Shanghai 201210
- China
| | - Tao Chen
- Shanghai Advanced Research Institute
- Chinese Academy of Science
- Shanghai 201210
- China
- University of Chinese Academy of Sciences
| | - Hui Qiang
- Department of Chemistry
- Shanghai University
- Shanghai 20044
- P.R. China
- Shanghai Advanced Research Institute
| | - Yahu A. Liu
- Medicinal Chemistry
- ChemBridge Research Laboratories
- San Diego
- USA
| | - Xue-Shun Jia
- Department of Chemistry
- Shanghai University
- Shanghai 20044
- P.R. China
| | - Wei-Bo Hu
- Shanghai Advanced Research Institute
- Chinese Academy of Science
- Shanghai 201210
- China
| | - Ke Wen
- School of Physical Science and Technology
- ShanghaiTech University
- Shanghai 201210
- China
- Shanghai Advanced Research Institute
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Toward a translational molecular ratchet: face-selective translation coincident with deuteration in a pseudo-rotaxane. Sci Rep 2018; 8:8950. [PMID: 29895967 PMCID: PMC5997654 DOI: 10.1038/s41598-018-27226-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Accepted: 05/23/2018] [Indexed: 11/08/2022] Open
Abstract
In the molecular world, molecular ratchets can realize the unidirectional movement in molecular machines. However, construction of artificial molecular ratchets has been still a great challenge. In this study, we investigate the formation of pseudo-rotaxane of a newly designed two-station axis molecule with α-cyclodextrin (α-CD) and the deuteration of acidic protons in the axis in D2O by 1H NMR at varying temperatures. Using the NMR data, we roughly estimate apparent rate constants for association, dissociation, and translation of α-CD during the pseudo-rotaxane formation based on a simplified kinetic model. These rate constants are indicative of face-selective and ratchet-like translation of α-CD on the axis because of the 2-methylpyridinium residues in the axis. We also evaluate apparent first-order rate constants for the deuteration. Comparison of these rate constants indicates that the face-selective translation of α-CD somehow couples with the deuteration. On the basis of this study, it is concluded that a translational molecular ratchet can be constructed using a large energy gradient with appropriate energy barriers and an enthalpically-driven coupled reaction.
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6
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Directional Shuttling of a Stimuli-Responsive Cone-Like Macrocycle on a Single-State Symmetric Dumbbell Axle. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201803349] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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7
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Cui JS, Ba QK, Ke H, Valkonen A, Rissanen K, Jiang W. Directional Shuttling of a Stimuli-Responsive Cone-Like Macrocycle on a Single-State Symmetric Dumbbell Axle. Angew Chem Int Ed Engl 2018; 57:7809-7814. [DOI: 10.1002/anie.201803349] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 04/25/2018] [Indexed: 12/11/2022]
Affiliation(s)
- Jie-Shun Cui
- Department of Chemistry; Southern University of Science and Technology; Xueyuan Blvd 1088 Shenzhen 518055 China
- College of Chemistry; Nankai University; Weijin Road 94 Tianjin 300071 China
| | - Qian-Kai Ba
- Department of Chemistry; Southern University of Science and Technology; Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Hua Ke
- Department of Chemistry; Southern University of Science and Technology; Xueyuan Blvd 1088 Shenzhen 518055 China
| | - Arto Valkonen
- Department of Chemistry; University of Jyvaskyla, Nanoscience Center; P. O. Box 35 40014 Jyvaskyla Finland
| | - Kari Rissanen
- Department of Chemistry; University of Jyvaskyla, Nanoscience Center; P. O. Box 35 40014 Jyvaskyla Finland
| | - Wei Jiang
- Department of Chemistry; Southern University of Science and Technology; Xueyuan Blvd 1088 Shenzhen 518055 China
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Zanichelli V, Bazzoni M, Arduini A, Franchi P, Lucarini M, Ragazzon G, Secchi A, Silvi S. Redox-Switchable Calix[6]arene-Based Isomeric Rotaxanes. Chemistry 2018; 24:12370-12382. [DOI: 10.1002/chem.201800496] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Indexed: 11/10/2022]
Affiliation(s)
- Valeria Zanichelli
- Dipartimento di Scienze Chimiche, della Vita e della; Sostenibilità Ambientale; Università di Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Margherita Bazzoni
- Dipartimento di Scienze Chimiche, della Vita e della; Sostenibilità Ambientale; Università di Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Arturo Arduini
- Dipartimento di Scienze Chimiche, della Vita e della; Sostenibilità Ambientale; Università di Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Paola Franchi
- Dipartimento di Chimica “G. Ciamician”; Università di Bologna; Via Selmi 2 40126 Bologna Italy
| | - Marco Lucarini
- Dipartimento di Chimica “G. Ciamician”; Università di Bologna; Via Selmi 2 40126 Bologna Italy
| | - Giulio Ragazzon
- Dipartimento di Chimica “G. Ciamician”; Università di Bologna; Via Selmi 2 40126 Bologna Italy
- Dipartimento di Scienze Chimiche; Università di Padova; via Marzolo 1 35131 Padova Italy
| | - Andrea Secchi
- Dipartimento di Scienze Chimiche, della Vita e della; Sostenibilità Ambientale; Università di Parma; Parco Area delle Scienze 17/A 43124 Parma Italy
| | - Serena Silvi
- Dipartimento di Chimica “G. Ciamician”; Università di Bologna; Via Selmi 2 40126 Bologna Italy
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Han C, Dong S, Zhao D, Sun D. Mild Synthesis of Pillar[4]arene[1]cis
-diepoxy-p
-dione and Guest-Assisted Formation of a 2D Network in the Solid State. European J Org Chem 2017. [DOI: 10.1002/ejoc.201701374] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Chengyou Han
- Department of Chemistry; College of Science; China University of Petroleum (East China); No. 66, Changjiang West Road 266580 Qingdao Huangdao District P. R. China
| | - Shengyi Dong
- College of Chemistry and Chemical Engineering; Hunan University; 410082 Changsha Hunan P. R. China
| | - Dezhi Zhao
- Department of Chemistry; College of Science; China University of Petroleum (East China); No. 66, Changjiang West Road 266580 Qingdao Huangdao District P. R. China
| | - Daofeng Sun
- Department of Chemistry; College of Science; China University of Petroleum (East China); No. 66, Changjiang West Road 266580 Qingdao Huangdao District P. R. China
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Hashidzume A, Kuse A, Oshikiri T, Adachi S, Yamaguchi H, Harada A. A pseudo-rotaxane of α-cyclodextrin and a two-station axis molecule consisting of pyridinium and decamethylene moieties, and its deuteration in deuterium oxide. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.05.044] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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11
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Zhao T, Shao X, Cai W. Free-energy landscapes of the coupled conformational transition and inclusion processes of altro-cyclodextrins. MOLECULAR SIMULATION 2017. [DOI: 10.1080/08927022.2017.1297533] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Tanfeng Zhao
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin, P.R. China
| | - Xueguang Shao
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin, P.R. China
- Tianjin Key Laboratory of Molecular Recognition and Biosensing, Tianjin, P.R. China
- State Key Laboratory of Medicinal Chemical Biology, Tianjin, P.R. China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, P.R. China
| | - Wensheng Cai
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin, P.R. China
- Tianjin Key Laboratory of Molecular Recognition and Biosensing, Tianjin, P.R. China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, P.R. China
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12
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Unidirectional Threading into a Bowl-Shaped Macrocyclic Trimer of Boron-Dipyrrin Complexes through Multipoint Recognition. Angew Chem Int Ed Engl 2016; 55:9606-9. [DOI: 10.1002/anie.201603821] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Indexed: 11/07/2022]
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13
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Nakamura T, Yamaguchi G, Nabeshima T. Unidirectional Threading into a Bowl-Shaped Macrocyclic Trimer of Boron-Dipyrrin Complexes through Multipoint Recognition. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201603821] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Takashi Nakamura
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Interdisciplinary Materials Science (TIMS); University of Tsukuba; 1-1-1 Tennodai Tsukuba Ibaraki 305-8571 Japan
| | - Gento Yamaguchi
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Interdisciplinary Materials Science (TIMS); University of Tsukuba; 1-1-1 Tennodai Tsukuba Ibaraki 305-8571 Japan
| | - Tatsuya Nabeshima
- Graduate School of Pure and Applied Sciences and Tsukuba Research Center for Interdisciplinary Materials Science (TIMS); University of Tsukuba; 1-1-1 Tennodai Tsukuba Ibaraki 305-8571 Japan
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Wang HX, Meng Z, Xiang JF, Xia YX, Sun Y, Hu SZ, Chen H, Yao J, Chen CF. Guest-dependent directional complexation based on triptycene derived oxacalixarene: formation of oriented rotaxanes. Chem Sci 2015; 7:469-474. [PMID: 29899891 PMCID: PMC5964692 DOI: 10.1039/c5sc03511b] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2015] [Accepted: 10/07/2015] [Indexed: 12/27/2022] Open
Abstract
Structural changes in the guest cause inversion of the dominant threading direction in triptycene derived oxacalixarene with different semi-cavities.
The manipulation of supramolecular devices to carry out sophisticated and programmed tasks is bound up with the spatial allocation of their components, especially the threading direction of the guest, which controls the host–guest orientation in the device. However, insights are needed to probe more possibilities for steering the threading direction. We have developed a new system consisting of a three-dimensional nonsymmetric oxacalixarene (H) with a fixed comformation and (bi)pyridinium salts (G1–G3), in which we found that based on the intrinsic discrepancies between the two semi-cavities of H, the electron densities of the axles greatly affect the threading direction. This was unequivocally demonstrated by NMR spectra and single crystal structures. With elaborate design, unidirectional threading was achieved, resulting in an oriented rotaxane. Therefore, we describe a new approach in which the threading direction and final orientation may be finely controlled by adjustment of the structure of the guest.
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Affiliation(s)
- Han-Xiao Wang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China. .,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zheng Meng
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China. .,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun-Feng Xiang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Yu-Xiang Xia
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Yihua Sun
- CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Shu-Zhen Hu
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Hui Chen
- CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Jiannian Yao
- CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | - Chuan-Feng Chen
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
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Avellini T, Baroncini M, Ragazzon G, Silvi S, Venturi M, Credi A. Photochemically Controlled Molecular Machines with Sequential Logic Operation. Isr J Chem 2014. [DOI: 10.1002/ijch.201400039] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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16
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Credi A, Silvi S, Venturi M. Light-Operated Machines Based on Threaded Molecular Structures. MOLECULAR MACHINES AND MOTORS 2014; 354:1-34. [DOI: 10.1007/128_2013_509] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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17
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Hashidzume A, Yamaguchi H, Harada A. Cyclodextrin-based molecular machines. Top Curr Chem (Cham) 2014; 354:71-110. [PMID: 24789535 DOI: 10.1007/128_2014_547] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
This chapter overviews molecular machines based on cyclodextrins (CDs). The categories of CD-based molecular machines, external stimuli for CD-based molecular machines, and typical examples of CD-based molecular machines are briefly described.
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Affiliation(s)
- Akihito Hashidzume
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka, 560-0043, Japan
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18
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Solvent- and Light-Controlled Unidirectional Transit of a Nonsymmetric Molecular Axle Through a Nonsymmetric Molecular Wheel. Chemistry 2012; 18:16203-13. [DOI: 10.1002/chem.201201625] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Revised: 08/06/2012] [Indexed: 11/07/2022]
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19
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Kuzuya A, Ohnishi T, Yamazaki T, Komiyama M. Dethreading of deoxyribonucleotides through α-cyclodextrin. Chem Asian J 2011; 5:2177-80. [PMID: 20715189 DOI: 10.1002/asia.201000289] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Akinori Kuzuya
- Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan.
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