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Czakó G, Gruber B, Papp D, Tajti V, Tasi DA, Yin C. First-principles mode-specific reaction dynamics. Phys Chem Chem Phys 2024; 26:15818-15830. [PMID: 38639072 DOI: 10.1039/d4cp00417e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024]
Abstract
Controlling the outcome of chemical reactions by exciting specific vibrational and/or rotational modes of the reactants is one of the major goals of modern reaction dynamics studies. In the present Perspective, we focus on first-principles vibrational and rotational mode-specific dynamics computations on reactions of neutral and anionic systems beyond six atoms such as X + C2H6 [X = F, Cl, OH], HX + C2H5 [X = Br, I], OH- + CH3I, and F- + CH3CH2Cl. The dynamics simulations utilize high-level ab initio analytical potential energy surfaces and the quasi-classical trajectory method. Besides initial state specificity and the validity of the Polanyi rules, mode-specific vibrational-state assignment for polyatomic product species using normal-mode analysis and Gaussian binning is also discussed and compared with experiment.
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Affiliation(s)
- Gábor Czakó
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
| | - Balázs Gruber
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
| | - Dóra Papp
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
| | - Viktor Tajti
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
| | - Domonkos A Tasi
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
| | - Cangtao Yin
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
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Espinosa-Garcia J, Rangel C, Corchado JC. Role of the Vibrational and Translational Energies in the CN(v)+C 2H 6(ν 1, ν 2, ν 5 and ν 9) Reactions. A Theoretical QCT Study. Chemphyschem 2024; 25:e202300997. [PMID: 38421195 DOI: 10.1002/cphc.202300997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 02/27/2024] [Accepted: 02/28/2024] [Indexed: 03/02/2024]
Abstract
Quasi-classical trajectory (QCT) calculations were conducted on the newly developed full-dimensional potential energy surface, PES-2023, to analyse two critical aspects: the influence of vibrational versus translational energy in promoting reactivity, and the impact of vibrational excitation within similar vibrational modes. The former relates to Polanyi's rules, while the latter concerns mode selectivity. Initially, the investigation revealed that independent vibrational excitation by a single quantum of ethane's symmetric and asymmetric stretching modes (differing by only 15 cm-1) yielded comparable dynamics, reaction cross-sections, HCN(v) vibrational product distributions, and scattering distributions. This observation dismisses any significant mode selectivity. Moreover, an equivalent amount of energy provided as translational energy (at total energies of 9.6 and 20.0 kcal mol-1) gave rise to slightly lower reactivity compared to the same amount of energy provided as vibrational energy. This effect is more evident at low energies, presenting a counterintuitive scenario in an 'early transition state' reaction. These findings challenge the straightforward application of Polanyi's rules in polyatomic systems. Regarding CN(v) vibrational excitation, our calculations reveal that the reaction cross-section remains practically unaffected by this vibrational excitation, suggesting that the CN stretching mode is a spectator mode. The results were rationalized by considering several factors: the strong coupling between different vibrational modes, and between vibrational modes and the reaction coordinate; and a significant vibrational energy redistribution within the ethane reactant before collision. This redistribution creates an unphysical energy flow, resulting in loss of adiabaticity and vibrational memory before the reactants' collision. These theoretical findings require future confirmation through experimental or theoretical quantum mechanical studies, which are currently unavailable.
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Affiliation(s)
- Joaquin Espinosa-Garcia
- Área de Quimica Fisica and Instituto de Computación Científica Avanzada de Extremadura, Universidad de Extremadura, Badajoz, Spain
| | - Cipriano Rangel
- Área de Quimica Fisica and Instituto de Computación Científica Avanzada de Extremadura, Universidad de Extremadura, Badajoz, Spain
| | - Jose C Corchado
- Área de Quimica Fisica and Instituto de Computación Científica Avanzada de Extremadura, Universidad de Extremadura, Badajoz, Spain
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3
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Espinosa-Garcia J, Rangel C. The CN(X 2Σ+) + C2H6 reaction: Dynamics study based on an analytical full-dimensional potential energy surface. J Chem Phys 2023; 159:124307. [PMID: 38127394 DOI: 10.1063/5.0172489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Accepted: 09/14/2023] [Indexed: 12/23/2023] Open
Abstract
The hydrogen abstraction reaction of the cyano radical with molecules of ethane presents some interesting points in the chemistry from ultra-cold to combustion environments especially with regard to HCN(v) product vibrational distribution. In order to understand its dynamics, a new analytical full-dimensional potential energy surface was developed, named PES-2023. It uses a combination of valence bond and mechanic molecular terms as the functional form, fitted to high-level ab initio calculations at the explicitly correlated CCSD(T)-F12/aug-cc-pVTZ level on a reduced and selected number of points describing the reactive process. The new surface showed a continuous and smooth behavior, describing reasonably the topology of the reaction: high exothermicity, low barrier, and presence of intermediate complexes in the entrance and exit channels. Using quasi-classical trajectory calculations (QCT) on the new PES-2023, a dynamics study was performed at room temperature with special emphasis on the HCN(v1,v2,v3) product stretching and bending vibrational excitations, and the results were compared with the experimental evidence, which presented discrepancies in the bending excitation. The available energy was mostly deposited as HCN(v) vibrational energy with the vibrational population inverted in the CH stretching mode and not inverted in the CN stretching and bending modes, thus simulating the experimental evidence. Other dynamics properties at room temperature were also analyzed; cold rotational energy distribution was found, associated with a linear and soft transition state, and backward scattering distribution was found, associated with a rebound mechanism.
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Affiliation(s)
- Joaquin Espinosa-Garcia
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain
| | - Cipriano Rangel
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain
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Li J, Tu Z, Xiang H, Li Y, Song H. Theoretical studies on the kinetics and dynamics of the BeH + + H 2O reaction: comparison with the experiment. Phys Chem Chem Phys 2023; 25:20997-21005. [PMID: 37503894 DOI: 10.1039/d3cp02322b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
Abstract
The reaction of BeH+ with background gaseous H2O may play a role in qubit loss for quantum information processing with Be+ as trapped ions, and yet its reaction mechanism has not been well understood until now. In this work, a globally accurate, full-dimensional ground-state potential energy surface (PES) for the BeH+ + H2O reaction was constructed by fitting a total of 170 438 ab initio energy points at the level of RCCSD(T)-F12/aug-cc-pVTZ using the fundamental invariant-neural network method. The total root-mean-square error of the final PES was 0.178 kcal mol-1. For comparison, quasi-classical trajectory calculations were carried out on the PES at an experimental temperature of 150 K. The obtained thermal rate constant and product branching ratio of the BeD+ + H2O reaction agreed quite well with experimental results. In addition, the vibrational state distributions and energy disposals of the products were calculated and rationalized using the sudden vector projection model.
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Affiliation(s)
- Jiaqi Li
- College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China.
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
| | - Zhao Tu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
- School of Chemical and Environmental Engineering, Hubei Minzu University, Enshi 445000, China
| | - Haipan Xiang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
- School of Physics and Electronics, Hunan University, Changsha 410082, China
| | - Yong Li
- College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China.
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
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Espinosa-Garcia J, Rangel C. Analytical potential energy surface and dynamics for the OH + CH 3OH reaction. J Chem Phys 2023; 158:054302. [PMID: 36754788 DOI: 10.1063/5.0137372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Using as functional form a combination of valence bond and mechanic molecular terms a new full-dimensional potential energy surface was developed for the title reaction, named PES-2022, which was fitted to high-level ab initio calculations at the coupled-cluster singles, doubles, and perturbative triples-F12 explicitly correlated level on a representative number of points describing the reactive system. This surface simultaneously describes the two reaction channels, hydrogen abstraction from the methyl group [(R1) path] and from the alcohol group [(R2) path] of methanol to form water. PES-2022 is a smooth and continuous surface, which reasonably describes the topology of this reactive system from reactants to products, including the intermediate complexes present in the system. Based on PES-2022 an exhaustive dynamics study was performed using quasi-classical trajectory calculations under two different initial conditions: at a fixed room temperature, for direct comparison with the experimental evidence and at different collision energies, to analyze possible mechanisms of reaction. In the first case, the available energy was mostly deposited as water vibrational energy, with the vibrational population inverted in the stretching modes and not inverted in the bending modes, reproducing the experimental evidence. In the second case, the analysis of different dynamics magnitudes (excitation functions, product energy partitioning, and product scattering distributions), allows us to suggest different mechanisms for both (R1) and (R2) paths: a direct mechanism for the (R2) path vs an indirect one, related with "nearly trapped" trajectories in the intermediate complexes, for the (R1) path.
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Affiliation(s)
- J Espinosa-Garcia
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain
| | - C Rangel
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain
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Braunstein M, Bonnet L, Roncero O. Capturing quantum effects with quasi-classical trajectories in the D + H+3 → H 2D + + H reaction. Phys Chem Chem Phys 2022; 24:5489-5505. [PMID: 35171152 DOI: 10.1039/d1cp04244k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present quasi-classical trajectory (QCT) cross sections, rate constants, and product state distributions for the D + H+3 → H2D+ + H reaction. Using the same H+4 potential surface, the rate constants obtained from several QCT-based methods correcting for zero-point effects by Gaussian binning the product H2D+ are compared to ring polymer molecular dynamics (RPMD) rate constants [Bulut et al., J. Phys. Chem. A, 2019, 123, 8766] which include quantum effects and to recent experimentally derived rate constants [Bowen et al., J. Chem. Phys., 2021, 154, 084307]. QCT with standard binning predicts rate constants that increase slowly as the temperature decreases from 1500 to 100 K. In contrast, the RPMD rate constants decrease rapidly with decreasing temperature. By 100 K, the QCT standard binning rate constant is more than 3 orders of magnitude larger than the RPMD rate constant. We show that QCT with Gaussian binning and proper normalization captures the zero-point effects and reproduces the RPMD rate constants over a large temperature range. Furthermore, the simple technique of counting only reactive trajectories with vibrational energy above the product zero-point energy matches the RPMD results well down to ∼300 K. The present Gaussian binned rate constants are in fair agreement with new experimentally derived rate constants from 100 to 1500 K. However, because the Gaussian binned rate constants do not include tunneling, important at lower temperatures, and the RPMD and experimentally derived rate constants have significant differences, the roles of the competing effects of zero-point energy, internal excitation of the H+3, and quantum tunneling are not simple and require further study for a consistent picture of the dynamics. Since rate constants for complex forming reactions, such as the title reaction, are difficult to converge with RPMD, alternative QCT-based methods, which include quantum effects and in addition provide product state distributions as described here, are highly desirable.
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Affiliation(s)
- Matthew Braunstein
- Spectral Sciences Incorporated, 4 Fourth Avenue, Burlington, MA 01824, USA.
| | - Laurent Bonnet
- CNRS, Université de Bordeaux, ISM, UMR 5255, F-33400 Talence, France
| | - Octavio Roncero
- Instituto de Fisica Fundamental (IFF-CSIC), C.S.I.C., Serrano 123, 28006 Madrid, Spain
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Espinosa-Garcia J. Global potential energy surface and product pair-correlated distributions for the F( 2P) + SiH 4 reaction - comparison with experiments. Phys Chem Chem Phys 2022; 24:2887-2900. [PMID: 35060978 DOI: 10.1039/d1cp04561j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this paper we study the gas-phase hydrogen abstraction reaction between fluorine atoms and silane in a three-step process: potential energy surface, kinetics and dynamics. Firstly, we developed for the first time an analytical full-dimensional surface, named PES-2021, using high-level explicitly-correlated ab initio data as the input. PES-2021 represents a continuous and smooth potential with analytical gradients and includes intuitive concepts (stretching and bending nuclear motions). Based on the PES-2021 quasi-classical trajectory (QCT) calculations were performed to analyse the kinetics and dynamics. Secondly, in the kinetics study at room temperature we observed a very fast reaction with a rate constant of 3.90 × 10-10 cm3 molecule-1 s-1, reproducing the scarce experimental evidence. Finally, the third step is the dynamics study, which was performed under two different conditions, a temperature of 77 K and a collision energy of 2.5 kcal mol-1, for direct comparison with experiments. In the first case, we found the largest fraction, 44%, deposited as HF(v) vibration, where the most populated states were HF(v = 2, 3), both results reproducing the experimental evidence. The largest discrepancy with the experiment was found in the HF(j) rotational distribution, where hotter distributions were found, this discrepancy being associated with limitations of the QCT method. The second case, E = 2.5 kcal mol-1, was a state-to-state correlated study and, therefore, more difficult. The theory overestimates (again) and consequently underestimates, respectively, the rotational and vibrational fractions of the HF(v,j) product as compared with experiments. While experimentally the SiH3 product appears excited only in the umbrella mode, ν2 = 0-5, correlated with the HF(v) co-product vibrational excited in v = 3 and 4, theoretically a wider vibrational distribution is found in both products, and these distributions have, obviously, an influence on the product correlated speed distributions. However, the product correlated angular distribution is well reproduced. In general, these results allowed us to test the capacity of PES-2021 + QCT tools to simulate the experimental evidence, revealing that agreement is better when average properties are compared, making the comparison worse when state-to-state properties are compared. Different causes of the theory/experiment discrepancies were analysed, and it was found that they are due, mainly, to limitations of the QCT method.
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Affiliation(s)
- J Espinosa-Garcia
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain.
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Dissection of the Multichannel Reaction O( 3P) + C 2H 2: Differential Cross-Sections and Product Energy Distributions. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27030754. [PMID: 35164017 PMCID: PMC8838145 DOI: 10.3390/molecules27030754] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/25/2021] [Revised: 01/17/2022] [Accepted: 01/19/2022] [Indexed: 11/17/2022]
Abstract
The O(3P) + C2H2 reaction plays an important role in hydrocarbon combustion. It has two primary competing channels: H + HCCO (ketenyl) and CO + CH2 (triplet methylene). To further understand the microscopic dynamic mechanism of this reaction, we report here a detailed quasi-classical trajectory study of the O(3P) + C2H2 reaction on the recently developed full-dimensional potential energy surface (PES). The entrance barrier TS1 is the rate-limiting barrier in the reaction. The translation of reactants can greatly promote reactivity, due to strong coupling with the reaction coordinate at TS1. The O(3P) + C2H2 reaction progress through a complex-forming mechanism, in which the intermediate HCCHO lives at least through the duration of a rotational period. The energy redistribution takes place during the creation of the long-lived high vibrationally (and rotationally) excited HCCHO in the reaction. The product energy partitioning of the two channels and CO vibrational distributions agree with experimental data, and the vibrational state distributions of all modes of products present a Boltzmann-like distribution.
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Product Vibrational State Distributions of the F CH 3OH Reaction on a Full-Dimensional Accurate Potential Energy Surface. CHINESE J CHEM PHYS 2022. [DOI: 10.1063/1674-0068/cjcp2111252] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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Espinosa-Garcia J, Corchado JC. Theoretical study of the Cl( 2P) + SiH 4 reaction: global potential energy surface and product pair-correlated distributions. Comparison with experiment. Phys Chem Chem Phys 2021; 23:21065-21077. [PMID: 34523628 DOI: 10.1039/d1cp02563e] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
For the theoretical study of the title reaction, an analytical full-dimensional potential energy surface named PES-2021 was developed for the first time, by fitting high-level explicitly-correlated ab initio data. This reaction presented high exothermicity, (298 K) = -11.6 kcal mol-1, reproducing the experimental evidence; it is a barrierless reaction and no intermediate complexes were found. PES-2021 is a continuous and smooth potential energy surface, it includes intuitive concepts in its development and fitting, such as stretching and bending nuclear motions, and it presents analytical first energy derivatives. Based on PES-2021, kinetics and dynamics studies were carried out using quasi-classical trajectory calculations. In the kinetics study, over the temperature range 300-450 K, we observed that rate constants were practically independent of temperature, with an almost zero activation energy, as compared to 0.0 and -0.48 kcal mol-1 experimentally reported. In this kinetics study the role of the spin-orbit effect on reactivity was analysed. In the dynamics study, different product pair-correlated dynamics properties were compared with the only experimental evidence: product energy partition, product vibrational distribution, product angular distribution and product speed distribution. We observed two mechanisms of reaction, a stripping mechanism associated with large impact parameters and forward scattering, and an indirect mechanism associated with sideways-backward scattering related with "nearly-trapped" trajectories due to the product rotation. In general, theoretical results reasonably simulate the experimental measurements when they consider some rotational and vibrational constraints as well as binning techniques to mimic a quantum-mechanical behaviour. Although the agreement is not quantitative, the present results shed light on the mechanism of this difficult polyatomic reactive system.
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Affiliation(s)
- J Espinosa-Garcia
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain.
| | - J C Corchado
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain.
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Xin R, Xiang H, Tian L, Li Y, Song H. Kinetic and Dynamic Studies of the F( 2P) + ND 3 → DF + ND 2 Reaction. J Phys Chem A 2021; 125:8025-8032. [PMID: 34478289 DOI: 10.1021/acs.jpca.1c06515] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The fast F reaction with NH3 poses a big challenge to experimental studies because of secondary chemical and collisional reactions. The quasi-classical trajectory method is utilized to investigate the mode specificity, product energy disposal, and temperature dependence of the thermal rate coefficient of F + ND3 → DF + ND2 on a recently developed potential energy surface. The effect of isotopic substitution is explored by comparing the F + ND3 reaction with the F + NH3 reaction. The computed results permit a better understanding of the F + ammonia reaction. The DF vibrational state has a Λ-type distribution, in accordance with the experimental measurement by the fast flow reactor technique. The product ND2 is dominantly populated in the ground state, and a considerable amount of ND2 is produced in the fundamental states of the bending mode. The similar vibrational state distributions of HF and NH2 in the F + NH3 reaction indicate a weak isotopic substitution effect on the product energy disposal. Exciting the umbrella mode of ND3 suppresses the reaction at low energies below 5 kcal mol-1, in sharp contrast to the observation in the F + NH3 reaction. These dynamical behaviors can be partially explained by the sudden vector projection model. In addition, the thermal rate coefficient of F + ND3 shows no temperature dependence in the range between 150 and 2000 K. There exists an inverse kinetic isotope effect at temperatures from 150 to 1500 K.
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Affiliation(s)
- Rong Xin
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Haipan Xiang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Li Tian
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Yong Li
- College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
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Sharipov AS, Loukhovitski BI. Energy disposal into the vibrational degrees of freedom of bimolecular reaction products: Key factors and simple model. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2021.111098] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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13
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Tian L, Song H, Yang M. Effects of bending excitation on the reaction dynamics of fluorine atoms with ammonia. Phys Chem Chem Phys 2021; 23:2715-2722. [PMID: 33491710 DOI: 10.1039/d0cp05790h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Vibrational excitation has been established as an efficient way to control the chemical reaction outcome. Stretching vibration of polyatomic molecules is believed to be efficient to promote abstraction reactions since energy is placed directly into the breaking bond. In this work, we report on a counterexample showing that exciting the low-frequency umbrella bending mode of ammonia enhances its reaction with fluorine atoms much more than exciting the high-frequency symmetric or asymmetric stretching mode over a wide range of collision energy, validated using both quasiclassical trajectory simulations and full-dimensional quantum dynamics calculations under the centrifugal-sudden approximation. This interesting mode-specific reaction dynamic originates from the increased chance of capturing the fluorine atom by ammonia due to the enlarged attractive interaction between them and the enhancement of the direct stripping reaction mediated by two submerged barriers.
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Affiliation(s)
- Li Tian
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China. and College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
| | - Minghui Yang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
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Zhu Y, Tian L, Song H, Yang M. Final-State-Resolved Dynamics of the H 3+ + CO → H 2 +HCO +/HOC + Reaction: A Quasi-Classical Trajectory Study. J Phys Chem A 2020; 124:6794-6800. [PMID: 32786987 DOI: 10.1021/acs.jpca.0c05605] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The ion-molecule reaction H3+ + CO → H2 + HCO+/HOC+, which initiates the formation of crucial organic molecules, plays a key role in interstellar and circumstellar environments. In this work, the quasi-classical trajectory method is employed to study the reaction dynamics on a recently developed full-dimensional global potential energy surface (PES). The calculated product internal energy distributions and relative internal excited fractions agree reasonably well with the experimental measurements. For the two reaction channels, most of the available energy flows into the vibrational modes of HCO+ or HOC+ at low collision energies, followed by the translational mode and the rotational modes of HCO+ or HOC+. As the collision energy increases, the proportion of the product translational energy increases while the proportion of the product vibrational energy decreases. Furthermore, the CH and CO stretching modes and their combination bands are effectively excited for the product HCO+ while the bending mode is remarkably excited for the product HOC+.
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Affiliation(s)
- Yongfa Zhu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Li Tian
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Minghui Yang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
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Espinosa-Garcia J, García-Chamorro M, Corchado JC. Rethinking the description of water product in polyatomic OH/OD + XH (X ≡ D, Br, NH2 and GeH3) reactions: theory/experimental comparison. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2577-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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16
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Murillo-Sánchez ML, González-Vázquez J, Corrales ME, de Nalda R, Martínez-Núñez E, García-Vela A, Bañares L. Femtochemistry under scrutiny: Clocking state-resolved channels in the photodissociation of CH3I in the A-band. J Chem Phys 2020; 152:014304. [DOI: 10.1063/1.5134473] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Marta L. Murillo-Sánchez
- Departamento de Química Física, Facultad de Ciencias Químicas (Unidad Asociada de I+D+i al Consejo Superior de Investigaciones Científicas), Universidad Complutense de Madrid, 28040 Madrid, Spain
| | - Jesús González-Vázquez
- Departamento de Química and Institute for Advanced Research in Chemical Sciences (IAdChem), Módulo 13, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - María E. Corrales
- Departamento de Química Física, Facultad de Ciencias Químicas (Unidad Asociada de I+D+i al Consejo Superior de Investigaciones Científicas), Universidad Complutense de Madrid, 28040 Madrid, Spain
| | - Rebeca de Nalda
- Instituto de Química Física Rocasolano, CSIC, C/ Serrano 119, 28006 Madrid, Spain
| | - Emilio Martínez-Núñez
- Departamento de Química Física, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | | | - Luis Bañares
- Departamento de Química Física, Facultad de Ciencias Químicas (Unidad Asociada de I+D+i al Consejo Superior de Investigaciones Científicas), Universidad Complutense de Madrid, 28040 Madrid, Spain
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA-Nanoscience), Cantoblanco, 28049 Madrid, Spain
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17
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Espinosa-Garcia J, Corchado JC, Butkovskaya NI, Setser DW. Theoretical and experimental revision of the water bending excitation in the OH/OD + GeH4 reactions. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2506-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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18
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QCT study of the vibrational and translational role in the H + C2H6(ν1, ν2, ν5, ν7, ν9 and ν10) reactions. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2504-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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19
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Tian L, Zhu Y, Song H, Yang M. Theoretical study of the F( 2P) + NH 3→ HF + NH 2 reaction on an accurate potential energy surface: dynamics and kinetics. Phys Chem Chem Phys 2019; 21:11385-11394. [PMID: 31111138 DOI: 10.1039/c9cp02113b] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The highly exothermic hydrogen abstraction reaction of the F atom with NH3 is investigated using the quasi-classical trajectory method on a newly developed potential energy surface (PES) for the ground electronic state. The full-dimensional PES is constructed by fitting 41 282 ab initio energy points at the level of UCCSD(T)-F12/aug-cc-pVTZ. The flexible fundamental invariant-neural network method is applied in the fitting, resulting in a total root mean square error of 0.13 kcal mol-1. On one hand, the calculated differential cross sections agree reasonably well with the experimental results and indicate that the reaction is dominated by the direct abstraction and stripping mechanisms while a considerable amount of reaction takes place by the indirect "yo-yo" mechanism. The product energy partition also reproduces well the experimental result, which can be understood according to the geometry change along the minimum energy path. On the other hand, the obtained vibrational state distribution of the product HF follows PνHF=2≈PνHF=1 > PνHF=0 > PνHF=3, less consistent with the scattered experimental results. In addition, the calculated thermal rate coefficients have practically no temperature dependence within the statistical errors.
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Affiliation(s)
- Li Tian
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China. and College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Yongfa Zhu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China. and University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China.
| | - Minghui Yang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China.
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20
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Benitez Y, Lu D, Lunny KG, Li J, Guo H, Continetti RE. Photoelectron–Photofragment Coincidence Studies on the Dissociation Dynamics of the OH–CH4 Complex. J Phys Chem A 2019; 123:4825-4833. [DOI: 10.1021/acs.jpca.9b02441] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yanice Benitez
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States
| | - Dandan Lu
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Katharine G. Lunny
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States
| | - Jun Li
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
- Institut für Physikalische Chemie, Theoretische Chemie, Universität Göttingen, Göttingen 37077, Germany
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Robert E. Continetti
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States
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21
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Jiang B, Guo H. Dynamics in reactions on metal surfaces: A theoretical perspective. J Chem Phys 2019; 150:180901. [PMID: 31091904 DOI: 10.1063/1.5096869] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Recent advances in theoretical characterization of reaction dynamics on metal surfaces are reviewed. It is shown that the widely available density functional theory of metals and their interactions with molecules have enabled first principles theoretical models for treating surface reaction dynamics. The new theoretical tools include methods to construct high-dimensional adiabatic potential energy surfaces, to characterize nonadiabatic processes within the electronic friction models, and to describe dynamics both quantum mechanically and classically. Three prototypical surface reactions, namely, dissociative chemisorption, Eley-Rideal reactions, and recombinative desorption, are surveyed with a focus on some representative examples. While principles governing gas phase reaction dynamics may still be applicable, the presence of the surface introduces a higher level of complexity due to strong interaction between the molecular species and metal substrate. Furthermore, most of these reactive processes are impacted by energy exchange with surface phonons and/or electron-hole pair excitations. These theoretical studies help to interpret and rationalize experimental observations and, in some cases, guide experimental explorations. Knowledge acquired in these fundamental studies is expected to impact many practical problems in a wide range of interfacial processes.
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Affiliation(s)
- Bin Jiang
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei 230026, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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22
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Zhou L, Kandratsenka A, Campbell CT, Wodtke AM, Guo H. Origin of Thermal and Hyperthermal CO 2 from CO Oxidation on Pt Surfaces: The Role of Post-Transition-State Dynamics, Active Sites, and Chemisorbed CO 2. Angew Chem Int Ed Engl 2019; 58:6916-6920. [PMID: 30861588 DOI: 10.1002/anie.201900565] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Indexed: 11/08/2022]
Abstract
The post-transition-state dynamics in CO oxidation on Pt surfaces are investigated using DFT-based ab initio molecular dynamics simulations. While the initial CO2 formed on a terrace site on Pt(111) desorbs directly, it is temporarily trapped in a chemisorption well on a Pt(332) step site. These two reaction channels thus produce CO2 with hyperthermal and thermal velocities with drastically different angular distributions, in agreement with recent experiments (Nature, 2018, 558, 280-283). The chemisorbed CO2 is formed by electron transfer from the metal to the adsorbate, resulting in a bent geometry. While chemisorbed CO2 on Pt(111) is unstable, it is stable by 0.2 eV on a Pt(332) step site. This helps explain why newly formed CO2 produced at step sites desorbs with far lower translational energies than those formed at terraces. This work shows that steps and other defects could be potentially important in finding optimal conditions for the chemical activation and dissociation of CO2 .
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Affiliation(s)
- Linsen Zhou
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Alexander Kandratsenka
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, 37077, Göttingen, Germany
| | - Charles T Campbell
- Department of Chemistry, University of Washington, Seattle, WA, 98195-1700, USA
| | - Alec M Wodtke
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, 37077, Göttingen, Germany.,Institute for Physical Chemistry, University of Göttingen, 37077, Göttingen, Germany
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM, 87131, USA
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23
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Zhou L, Kandratsenka A, Campbell CT, Wodtke AM, Guo H. Origin of Thermal and Hyperthermal CO
2
from CO Oxidation on Pt Surfaces: The Role of Post‐Transition‐State Dynamics, Active Sites, and Chemisorbed CO
2. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201900565] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Linsen Zhou
- Department of Chemistry and Chemical BiologyUniversity of New Mexico Albuquerque NM 87131 USA
| | - Alexander Kandratsenka
- Department of Dynamics at SurfacesMax Planck Institute for Biophysical Chemistry 37077 Göttingen Germany
| | | | - Alec M. Wodtke
- Department of Dynamics at SurfacesMax Planck Institute for Biophysical Chemistry 37077 Göttingen Germany
- Institute for Physical ChemistryUniversity of Göttingen 37077 Göttingen Germany
| | - Hua Guo
- Department of Chemistry and Chemical BiologyUniversity of New Mexico Albuquerque NM 87131 USA
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24
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Olasz B, Czakó G. Uncovering the role of the stationary points in the dynamics of the F - + CH 3I reaction. Phys Chem Chem Phys 2019; 21:1578-1586. [PMID: 30620025 DOI: 10.1039/c8cp06207b] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We describe an analysis method which assigns geometries to stationary points along (quasi)classical trajectories. The method is applied to the F- + CH3I reaction, thereby uncovering the role of the minima and transition states in the dynamics of the SN2 inversion, SN2 retention via front-side attack and double inversion, induced inversion, and proton-transfer channels. Stationary-point probability distributions, stationary-point-specific trajectory orthogonal projections, root-mean-square distance distributions, transition probability matrices, and time evolutions of the stationary points reveal long-lived front-side (F-ICH3) and hydrogen-bonded (F-HCH2I) complexes in the entrance channel and significant post-reaction ion-dipole complex (FCH3I-) formation in the SN2 exit channel. Most of the proton-transfer stationary points (FHCH2I-) participate in all the reaction channels with larger distance deviations than the double-inversion transition state. Significant forward-backward transitions are observed between the minima and transition states indicating complex, indirect dynamics. The utility of distance and energy constraints is also investigated, thereby restricting the assignment into uniform configuration or energy ranges around the stationary points.
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Affiliation(s)
- Balázs Olasz
- Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
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25
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State-to-state dynamics of the Cl(2P) + C2H6(ν5, ν1 = 0, 1) → HCl(v′, j′) + C2H5 hydrogen abstraction reactions. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2416-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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26
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Simulation of experimental imaging results for four isotopic variants of the OH + CH4 reaction with a simple and relatively accurate theoretical approach. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.09.017] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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27
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Ping L, Tian L, Song H, Yang M. New Method To Extract Final-State Information of Polyatomic Reactions Based on Normal Mode Analysis. J Phys Chem A 2018; 122:6997-7005. [PMID: 30107119 DOI: 10.1021/acs.jpca.8b06662] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
State-to-state reaction dynamics provides a comprehensive insight into reaction mechanisms of chemical reactions at the atomic level. A new scheme to extract final-state information based on normal mode analysis is proposed in this work. Different from the traditional scheme extracting the coordinates and momenta from the last step of each trajectory, they are taken in the new scheme from a specific step of each reactive trajectory within the last vibrational period of the product molecule by demanding the corresponding geometry of the step to have the minimum potential energy. Test calculations on the collisions between the atom H and the molecules H2O, H2S, and NH3 show that the new scheme works much better than the traditional one. In addition, the new scheme is applied to calculate the vibrational state distribution of the product NH2 in the reaction H + NH3 → H2 + NH2.
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Affiliation(s)
- Leilei Ping
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics , Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071 , China.,College of Physical Science and Technology , Huazhong Normal University , Wuhan 430079 , China
| | - Li Tian
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics , Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071 , China.,College of Physical Science and Technology , Huazhong Normal University , Wuhan 430079 , China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics , Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071 , China
| | - Minghui Yang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics , Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071 , China
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28
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Zhu Y, Ping L, Bai M, Liu Y, Song H, Li J, Yang M. Tracking the energy flow in the hydrogen exchange reaction OH + H 2O → H 2O + OH. Phys Chem Chem Phys 2018; 20:12543-12556. [PMID: 29693667 DOI: 10.1039/c8cp00938d] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The prototypical hydrogen exchange reaction OH + H2O → H2O + OH has attracted considerable interest due to its importance in a wide range of chemically active environments. In this work, an accurate global potential energy surface (PES) for the ground electronic state was developed based on ∼44 000 ab initio points at the level of UCCSD(T)-F12a/aug-cc-pVTZ. The PES was fitted using the fundamental invariant-neural network method with a root mean squared error of 4.37 meV. The mode specific dynamics was then studied by the quasi-classical trajectory method on the PES. Furthermore, the normal mode analysis approach was employed to calculate the final vibrational state distribution of the product H2O, in which a new scheme to acquire the Cartesian coordinates and momenta of each atom in the product molecule from the trajectories was proposed. It was found that, on one hand, excitation of either the symmetric stretching mode or the asymmetric stretching mode of the reactant H2O promotes the reaction more than the translational energy, which can be rationalized by the sudden vector projection model. On the other hand, the relatively higher efficacy of exciting the symmetric stretching mode than that of the asymmetric stretching mode is caused by the prevalence of the indirect mechanism at low collision energies and the stripping mechanism at high collision energies. In addition, the initial collision energy turns ineffectively into the vibrational energy of the products H2O and OH while a fraction of the energy transforms into the rotational energy of the product H2O. Fundamental excitation of the stretching modes of H2O results in the product H2O having the highest population in the fundamental state of the asymmetric stretching mode, followed by the ground state and the fundamental state of the symmetric stretching mode.
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Affiliation(s)
- Yongfa Zhu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China.
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29
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Ping L, Zhu Y, Li A, Song H, Li Y, Yang M. Dynamics and kinetics of the reaction OH + H2S → H2O + SH on an accurate potential energy surface. Phys Chem Chem Phys 2018; 20:26315-26324. [DOI: 10.1039/c8cp05276j] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Mode specificity and product energy disposal are unveiled in the reaction OH + H2S → H2O + SH.
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Affiliation(s)
- Leilei Ping
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Sciences
- Wuhan 430071
- China
| | - Yongfa Zhu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Sciences
- Wuhan 430071
- China
| | - Anyang Li
- College of Chemistry and Materials Science
- Northwest University
- Xi’an
- China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Sciences
- Wuhan 430071
- China
| | - Yong Li
- College of Physical Science and Technology
- Huazhong Normal University
- Wuhan 430079
- China
| | - Minghui Yang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Sciences
- Wuhan 430071
- China
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30
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Is Photolytic Production a Viable Source of HCN and HNC in Astrophysical Environments? A Laboratory-based Feasibility Study of Methyl Cyanoformate. ACTA ACUST UNITED AC 2017. [DOI: 10.3847/1538-4357/aa8ea7] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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31
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Vibrational distribution and dynamics study of the HCN(v
1, v
2, v
3) product in the CN + CH4 hydrogen abstraction reaction. Theor Chem Acc 2017. [DOI: 10.1007/s00214-017-2155-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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32
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Espinosa-Garcia J, Bonnet L, Corchado JC. Theoretical Study of the Pair-Correlated F + CHD3(v = 0,ν1 = 1) Reaction: Effect of CH Stretching Vibrational Excitation. J Phys Chem A 2017; 121:4076-4092. [DOI: 10.1021/acs.jpca.7b02665] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Joaquin Espinosa-Garcia
- Departamento
de Química Física and Instituto de Computatión
Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain
| | - Laurent Bonnet
- CNRS, Institut
des Sciences Moleculaires, UMR 5255, 33405 Talence, and Université
de Bordeaux, Institut des Sciences Moleculaires, UMR 5255, 33405 Talence, France
| | - Jose C. Corchado
- Departamento
de Química Física and Instituto de Computatión
Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain
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33
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Espinosa-Garcia J, Corchado JC. QCT dynamics study of OH/OD + GeH4 reactions. The problem of water bending excitation. Phys Chem Chem Phys 2017; 19:1580-1589. [DOI: 10.1039/c6cp08118e] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The difficulties in the description of the water bending population could be related to the zero-point violation problem in QCT calculations.
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Affiliation(s)
- J. Espinosa-Garcia
- Departamento de Quimica Fisica and Instituto de Computación Científica Avanzada (ICCAEx)
- Universidad de Extremadura
- 06071 Badajoz
- Spain
| | - J. C. Corchado
- Departamento de Quimica Fisica and Instituto de Computación Científica Avanzada (ICCAEx)
- Universidad de Extremadura
- 06071 Badajoz
- Spain
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34
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Xie C, Jiang B, Yang M, Guo H. State-to-State Mode Specificity in F + CHD3 → HF/DF + CD3/CHD2 Reaction. J Phys Chem A 2016; 120:6521-8. [DOI: 10.1021/acs.jpca.6b06450] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Changjian Xie
- Department of Chemistry
and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Bin Jiang
- Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Minghui Yang
- Key Laboratory of Magnetic Resonance in
Biological Systems, Wuhan Center for Magnetic Resonance, State Key
Laboratory of Magnetic Resonance and Atomic and Molecular Physics,
Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Hua Guo
- Department of Chemistry
and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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35
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Bonnet L, Corchado JC, Espinosa-Garcia J. Pair-correlated speed distributions for the OH+CH4/CD4 reactions: Further remarks on their classical trajectory calculations in a quantum spirit. CR CHIM 2016. [DOI: 10.1016/j.crci.2016.03.010] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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36
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Qu C, Bowman JM. Revisiting Adiabatic Switching for Initial Conditions in Quasi-Classical Trajectory Calculations: Application to CH4. J Phys Chem A 2016; 120:4988-93. [DOI: 10.1021/acs.jpca.5b12701] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Chen Qu
- Department of Chemistry and
Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Joel M. Bowman
- Department of Chemistry and
Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
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37
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Espinosa-Garcia J, Corchado JC. Product Translational and Vibrational Distributions for the OH/OD + CH4/CD4 Reactions from Quasiclassical Trajectory Calculations. Comparison with Experiment. J Phys Chem B 2015; 120:1446-53. [DOI: 10.1021/acs.jpcb.5b04290] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Joaquin Espinosa-Garcia
- Departamento de Química
Física, Universidad de Extremadura, Avenida de Elvas S/N, 06071 Badajoz, Spain
| | - Jose C. Corchado
- Departamento de Química
Física, Universidad de Extremadura, Avenida de Elvas S/N, 06071 Badajoz, Spain
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38
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Li J, Jiang B, Song H, Ma J, Zhao B, Dawes R, Guo H. From ab Initio Potential Energy Surfaces to State-Resolved Reactivities: X + H2O ↔ HX + OH [X = F, Cl, and O(3P)] Reactions. J Phys Chem A 2015; 119:4667-87. [DOI: 10.1021/acs.jpca.5b02510] [Citation(s) in RCA: 85] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jun Li
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
- School of Chemistry
and Chemical Engineering, Chongqing University, Chongqing 400044, China
| | - Bin Jiang
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Hongwei Song
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Jianyi Ma
- Institute of Atomic
and Molecular Physics, Sichuan University, Chengdu, Sichuan 610065, China
| | - Bin Zhao
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Richard Dawes
- Department
of Chemistry, Missouri University of Science and Technology, Rolla, Missouri 65409, United States
| | - Hua Guo
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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39
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Li J, Corchado JC, Espinosa-Garcia J, Guo H. Final state-resolved mode specificity in HX + OH → X + H2O (X = F and Cl) reactions: A quasi-classical trajectory study. J Chem Phys 2015; 142:084314. [DOI: 10.1063/1.4913522] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jun Li
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400030, China
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Jose C. Corchado
- Departamento de Quimica Fisica, Universidad de Extremadura, Badajoz 06071, Spain
| | | | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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40
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Espinosa-Garcia J, Corchado J, Bonnet L. Quasi-classical trajectory study of the water vibrational distribution for the polyatomic OH/OD+NH3 reactions: Comparison with experiment. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2014.12.028] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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41
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Vázquez SA, Martínez-Núñez E. HCN elimination from vinyl cyanide: product energy partitioning, the role of hydrogen–deuterium exchange reactions and a new pathway. Phys Chem Chem Phys 2015; 17:6948-55. [DOI: 10.1039/c4cp05626d] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A schematic diagram of HCN elimination channels from vinyl cyanide including a new CCdiss pathway.
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Affiliation(s)
- Saulo A. Vázquez
- Departamento de Química Física and Centro Singular de Investigación en Química Biológica y Materiales Moleculares
- Campus Vida
- Universidade de Santiago de Compostela
- Santiago de Compostela
- Spain
| | - Emilio Martínez-Núñez
- Departamento de Química Física and Centro Singular de Investigación en Química Biológica y Materiales Moleculares
- Campus Vida
- Universidade de Santiago de Compostela
- Santiago de Compostela
- Spain
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42
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Xu X, Zheng J, Yang KR, Truhlar DG. Photodissociation Dynamics of Phenol: Multistate Trajectory Simulations including Tunneling. J Am Chem Soc 2014; 136:16378-86. [DOI: 10.1021/ja509016a] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xuefei Xu
- Department of Chemistry,
Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Jingjing Zheng
- Department of Chemistry,
Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Ke R. Yang
- Department of Chemistry,
Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Donald G. Truhlar
- Department of Chemistry,
Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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43
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Espinosa-Garcia J. Quasi-Classical Trajectory Study of the Vibrational and Translational Effects on the O(3P) + CD4 Reaction. J Phys Chem A 2014; 118:3572-9. [DOI: 10.1021/jp502414e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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44
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Czakó G, Bowman JM. Reaction Dynamics of Methane with F, O, Cl, and Br on ab Initio Potential Energy Surfaces. J Phys Chem A 2014; 118:2839-64. [DOI: 10.1021/jp500085h] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Gábor Czakó
- Laboratory of Molecular Structure and Dynamics,
Institute of Chemistry, Eötvös University, H-1518 Budapest 112, P.O. Box 32, Hungary
| | - Joel M. Bowman
- Cherry
L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
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45
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Conte R, Fu B, Kamarchik E, Bowman JM. A novel Gaussian Binning (1GB) analysis of vibrational state distributions in highly excited H2O from reactive quenching of OH* by H2. J Chem Phys 2013; 139:044104. [DOI: 10.1063/1.4816277] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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46
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Czakó G, Liu R, Yang M, Bowman JM, Guo H. Quasiclassical Trajectory Studies of the O(3P) + CX4(vk = 0, 1) → OX(v) + CX3(n1n2n3n4) [X = H and D] Reactions on an Ab Initio Potential Energy Surface. J Phys Chem A 2013; 117:6409-20. [DOI: 10.1021/jp4038107] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gábor Czakó
- Laboratory of Molecular Structure
and Dynamics, Institute of Chemistry, Eötvös University, H-1518, Budapest 112, P.O. Box 32, Hungary
| | - Rui Liu
- Key Laboratory of Magnetic Resonance
in Biological Systems, State Key Laboratory of Magnetic Resonance
and Atomic and Molecular Physics, Wuhan Centre for Magnetic Resonance,
Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, People’s Republic
of China
| | - Minghui Yang
- Key Laboratory of Magnetic Resonance
in Biological Systems, State Key Laboratory of Magnetic Resonance
and Atomic and Molecular Physics, Wuhan Centre for Magnetic Resonance,
Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, People’s Republic
of China
| | - Joel M. Bowman
- Cherry L. Emerson
Center for Scientific
Computation and Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Hua Guo
- Department of Chemistry and
Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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47
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Monge-Palacios M, Espinosa-Garcia J. Role of Vibrational and Translational Energy in the OH + NH3 Reaction: A Quasi-Classical Trajectory Study. J Phys Chem A 2013; 117:5042-51. [DOI: 10.1021/jp403571y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- M. Monge-Palacios
- Departamento de Química
Física, Universidad de Extremadura, 06071 Badajoz, Spain
| | - J. Espinosa-Garcia
- Departamento de Química
Física, Universidad de Extremadura, 06071 Badajoz, Spain
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48
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Monge-Palacios M, Espinosa-Garcia J. Bond and mode selectivity in the OH + NH2D reaction: a quasi-classical trajectory calculation. Phys Chem Chem Phys 2013; 15:19180-90. [DOI: 10.1039/c3cp52809j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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50
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Corchado JC, Espinosa-Garcia J, Li J, Guo H. CO2 Vibrational State Distributions From Quasi-Classical Trajectory Studies of the HO + CO → H + CO2 Reaction and H + CO2 Inelastic Collision. J Phys Chem A 2012; 117:11648-54. [DOI: 10.1021/jp310503d] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jose C. Corchado
- Departamento de Quimica
Fisica, Universidad de Extremadura, Spain
| | | | - Jun Li
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131,
United States
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131,
United States
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