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Monaco G, Scott ELT, Zanasi R. Reversal of Clar's Aromatic-Sextet Rule in Ultrashort Single-End-Capped [5,5] Carbon Nanotubes. ChemistryOpen 2020; 9:616-622. [PMID: 32489766 PMCID: PMC7253069 DOI: 10.1002/open.202000091] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 05/06/2020] [Indexed: 12/18/2022] Open
Abstract
The three-fold HOMO-LUMO gap oscillation, typical of finite length armchair carbon nanotubes (CNT), has a major effect on the magnetic response of ultrashort, single-end-capped [5,5] carbon nanotubes to a perturbing magnetic field parallel to the main symmetry axis. For the CNT's containing 40, 70, and 100 carbon atoms, for which 100 % of the C=C double bonds can be grouped into aromatic-sextets, i. e., fully or complete Clar networks, large paratropic (antiaromatic) global circulations around the cylindrical axis are predicted at the DFT level of calculation. Local and semi-global diatropic (aromatic) currents of strengths not larger than that of the benzene molecule are determined for a perpendicular perturbing magnetic field. CNTs of intermediate lengths do not display this enhanced antiaromatic response. The paratropic current flow clearly shows that these complete Clar networks can be viewed as stacked cycloparaphenylene belts, each providing a double 4 n annulene circuit as a consequence of the quinoidal resonance structure that results from their closure. Paradoxically, the fully aromatic Clar structure itself is responsible for the enhanced global antiaromaticity.
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Affiliation(s)
- Guglielmo Monaco
- Dipartimento di Chimica e Biologia “A. Zambelli”Università degli studi di Salernovia Giovanni Paolo II 132Fisciano84084SAItaly
| | | | - Riccardo Zanasi
- Dipartimento di Chimica e Biologia “A. Zambelli”Università degli studi di Salernovia Giovanni Paolo II 132Fisciano84084SAItaly
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2
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Hemachandran K, Anbusrinivasan P, Ramalingam S, Aarthi R, Nithya C. Structural activity analysis, spectroscopic investigation, biological and chemical properties interpretation on Beta Carboline using quantum computational methods. Heliyon 2019; 5:e02788. [PMID: 31844720 PMCID: PMC6895699 DOI: 10.1016/j.heliyon.2019.e02788] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Revised: 09/07/2019] [Accepted: 11/01/2019] [Indexed: 12/31/2022] Open
Abstract
In this methodological work, the structural activity analysis have been carried out on β-Carboline to study the anti cancer activity and the way of improving the biological activity. The molecular spectroscopic tools were used to evaluate all the experimental data like spectral results and data were validated by the computational, HyperChem and Osiris tools. The structural, biological and physico-chemical related analyses have been performed to interpret the properties. The GPCR ligand calculated to be 0.11 for generating pharmacokinetic process, Specified drug information for the compound, was congregated from all types of structural activity which was drawn by spectral and HyperChem data. The σ and π interaction band gap (6.18 eV) ensured the drug consistency. The Mulliken charge process distribution was mapped, the charge orientation assignment was checked; the acquired negative charge potential consignment for the cause of antibiotic impact was verified. The molecular orbital interaction study was carried out to identify the origination of degeneracy of interaction causing drug mechanism. Using NMR spectral pattern, the chemical reaction path was recognized and the nodal region dislocation was distinguished on chemical shift. The Electronegativity (χ) and Electrophilicity charge transfer found to be 3.83 and 0.215, confirmed charge complex transfer for activating drug process in the compound. The molecular nonbonding section was thoroughly observed in order to find the occupancy energy, was the key process to initiate drug activity. The bathochromic electronic shift was observed and the existence of CT complex was discussed. The hindering of toxicity was inspected on inevitable chirality of the compound by specifying VCD spectrum.
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Affiliation(s)
- K. Hemachandran
- Department of Chemistry, A.V.C. College, Mayiladuthurai, Tamilnadu, India
| | - P. Anbusrinivasan
- Department of Chemistry, A.V.C. College, Mayiladuthurai, Tamilnadu, India
| | - S. Ramalingam
- Department of Physics, A.V.C. College, Mayiladuthurai, Tamilnadu, India
| | - R. Aarthi
- Department of Physics, ST. Theresas College of Arts and Science, Tharangambadi, Tamilnadu, India
| | - C.K. Nithya
- Department of Physics, ST. Theresas College of Arts and Science, Tharangambadi, Tamilnadu, India
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3
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Yu AY. Stability and Aromaticity of Some Superatomic Compounds Al3
-X (X=F, LiF2
, BeF3
, BF4
). ChemistrySelect 2018. [DOI: 10.1002/slct.201702995] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Ang-yang Yu
- Jilin Univ; Inst Theoret Chem, State Key Lab Theoret & Computat Chem; Changchun 130023, Peoples R China
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4
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Aguiar EC, Longo RL, da Silva JBP. Modeling zigzag CNT: dependence of structural and electronic properties on length, and application to encapsulation of HCN and C 2H 2. J Mol Model 2017; 23:144. [PMID: 28364309 DOI: 10.1007/s00894-017-3319-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2016] [Accepted: 03/13/2017] [Indexed: 11/24/2022]
Abstract
Density functional theory (B3LYP, B3LYP-D2 and wB97XD functionals) was used in finite models of zigzag carbon nanotubes (CNT), (n,0)×k with n = 6-9 and k = 2-4, to systematically investigate the effects of size on their structural and electronic properties. We found that the ratio between the length (L t) and the diameter (d t) of the pristine CNT has to be larger than 2, i.e., L t/d t > 2, in order to provide the observed experimental trends of C=C bond distances, as well as to maintain the atomic charges nearly constant and zero around the center of the tube. Therefore, the concepts of useful length and volume were developed and tested for the encapsulation process of HCN and C2H2 into CNTs. The energies involved in these processes, as well as the changes in molecular structure and electronic properties of the dopants and the CNTs are discussed and rationalized by the amount of charge transferred between dopant and CNT. Graphical Abstract Illustration of zigzag CNT length and diameter ratio in order to represent C=C bond experimental trend.
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Affiliation(s)
- Eduardo C Aguiar
- Unidade Acadêmica de Serra Talhada, Universidade Federal Rural de Pernambuco (UFRPE), 56909-535, Serra Talhada, PE, Brazil.
| | - Ricardo L Longo
- Departamento de Química Fundamental, Universidade Federal de Pernambuco (UFPE), 50740-540, Recife, PE, Brazil
| | - João Bosco P da Silva
- Departamento de Química Fundamental, Universidade Federal de Pernambuco (UFPE), 50740-540, Recife, PE, Brazil
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5
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Kupka T, Stachów M, Stobiński L, Kaminský J. DFT study of zigzag (n, 0) single-walled carbon nanotubes: 13C NMR chemical shifts. J Mol Graph Model 2016; 67:14-9. [DOI: 10.1016/j.jmgm.2016.04.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Revised: 04/14/2016] [Accepted: 04/19/2016] [Indexed: 10/21/2022]
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6
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Sun X, Li B, Su D. The Unexpected Reactivity of the Carbon Sites on the Nanostructured Carbon Catalysts towards the C−H Bond Activation from the Analysis of the Aromaticity. Chem Asian J 2016; 11:1668-71. [DOI: 10.1002/asia.201600222] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Indexed: 11/05/2022]
Affiliation(s)
- XiaoYing Sun
- Institute of Catalysis for Energy and Environment; ShenYang Normal University; ShenYang 110034 China
| | - Bo Li
- ShenYang National Laboratory for Materials Science; Institute of Metal Research; Chinese Academy of Sciences; WenHua Road 72 ShenYang 110016 China
| | - DangSheng Su
- ShenYang National Laboratory for Materials Science; Institute of Metal Research; Chinese Academy of Sciences; WenHua Road 72 ShenYang 110016 China
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7
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Segawa Y, Yagi A, Ito H, Itami K. A Theoretical Study on the Strain Energy of Carbon Nanobelts. Org Lett 2016; 18:1430-3. [PMID: 26953497 DOI: 10.1021/acs.orglett.6b00365] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A theoretical study on the strain energy of carbon nanobelts, i.e. the belt-shaped molecules representing the sidewall structures of carbon nanotubes, is reported. The strain energy of carbon nanobelts with chiral indices (n,n), (n,0), and (n,m) was determined without considering hypothetical homodesmotic reactions. The calculated difference between the strain energy of carbon nanobelts and their possible precursors is expected to be of great utility for future synthetic purposes.
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Affiliation(s)
- Yasutomo Segawa
- JST, ERATO, Itami Molecular Nanocarbon Project, Chikusa, Nagoya 464-8602, Japan.,Graduate School of Science, Nagoya University , Chikusa, Nagoya 464-8602, Japan
| | - Akiko Yagi
- Graduate School of Science, Nagoya University , Chikusa, Nagoya 464-8602, Japan
| | - Hideto Ito
- Graduate School of Science, Nagoya University , Chikusa, Nagoya 464-8602, Japan
| | - Kenichiro Itami
- JST, ERATO, Itami Molecular Nanocarbon Project, Chikusa, Nagoya 464-8602, Japan.,Graduate School of Science, Nagoya University , Chikusa, Nagoya 464-8602, Japan.,Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University , Chikusa, Nagoya 464-8602, Japan
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8
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Esrafili MD, Nurazar R. A theoretical study on surface reactivity of fluorinated (n,0) and (n,n) carbon nanotubes (n = 3–6). CAN J CHEM 2014. [DOI: 10.1139/cjc-2013-0553] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Density functional theory calculations are performed to investigate the surface reactivity of pristine as well as fluorine-terminated zigzag (n,0) and armchair (n,n) carbon nanotubes (n = 3–6). The properties determined include the electrostatic potential V(r) and average local ionization energy Ī(r) on the surfaces of the investigated tubes. A general feature of all of the systems studied is that stronger potentials are associated with regions of higher curvature. The results indicate that both V(r) and Ī(r) detect the effects of fluorine-terminated regions in which significant effects are observed for those atoms in the vicinity of the fluorine-terminated regions. Comparison with the Ī(r) of the pristine nanotube indicates correctly that in the fluorine-terminated models, the fluorine atoms tend to deactivate the surface toward electrophilic/radical attack.
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Affiliation(s)
- Mehdi D. Esrafili
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
| | - Roghaye Nurazar
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
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9
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Lin Z, Zhang H, Huang J, Xi Z, Liu L, Lin B. Biodistribution of single-walled carbon nanotubes in rats. Toxicol Res (Camb) 2013. [DOI: 10.1039/c3tx50059d] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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10
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Sánchez-Sanz G, Trujillo C, Rozas I, Elguero J. A theoretical study on the aromaticity of benzene and related derivatives incorporating a C–C C–C fragment. Tetrahedron 2013. [DOI: 10.1016/j.tet.2013.06.072] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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Kupka T, Stachów M, Chełmecka E, Pasterny K, Stobińska M, Stobiński L, Kaminský J. Efficient Modeling of NMR Parameters in Carbon Nanosystems. J Chem Theory Comput 2013; 9:4275-86. [DOI: 10.1021/ct4002812] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Teobald Kupka
- University of Opole, Faculty of Chemistry,
48, Oleska Street, 45-052 Opole, Poland
| | - Michał Stachów
- University of Opole, Faculty of Chemistry,
48, Oleska Street, 45-052 Opole, Poland
| | - Elżbieta Chełmecka
- Division of Statistics, Department
of Instrumental Analysis, Medical University of Silesia, 30 Ostrogórska Street, 41-200 Sosnowiec, Poland
| | - Karol Pasterny
- A. Chełkowski Institute of
Physics, University of Silesia, 4 Uniwersytecka
Street, 40-007 Katowice, Poland
| | - Magdalena Stobińska
- Institute of Theoretical Physics and Astrophysics, University of Gdańsk, 57 Wita Stwosza Street, 80-952 Gdańsk,
Poland
- Institute of Physics, Polish Academy of Sciences, 32/46, al. Lotników,
02-668 Warsaw, Poland
| | - Leszek Stobiński
- Institute
of Physical Chemistry, Polish Academy of Sciences, 44/52 Kasprzaka Street, 01-224 Warsaw, Poland
| | - Jakub Kaminský
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo Nam. 2., 166
10 Prague, Czech Republic
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12
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Kumari A, Dorai K. Using the 19F NMR chemical shift anisotropy tensor to differentiate between the zigzag and chiral forms of fluorinated single-walled carbon nanotubes. J Phys Chem A 2011; 115:6543-50. [PMID: 21598917 DOI: 10.1021/jp2033388] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The structural characterization of different kinds of zigzag and chiral single-walled carbon nanotubes (SWNTs) has been investigated theoretically using (19)F NMR spectroscopy. The chemical shift anisotropy (CSA) tensor is computed at different levels of theory for the (19)F nuclei in different forms of functionalized fluorinated carbon nanotubes (CNT). A set of fluorine CSA parameters comprising the span, skew, and isotropic chemical shift is computed for each form of the fluoronanotubes and multidimensional CSA parameter correlation maps are constructed. We show that these correlations are able to clearly distinguish between the chiral and zigzag forms of fluorinated carbon nanotubes (F-SWNTs). Implications for solid-state and liquid-state NMR experiments are discussed.
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Affiliation(s)
- Amrita Kumari
- Department of Physics, Indian Institute of Science Education & Research, Mohali, Chandigarh 160019, India
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