1
|
Orrillo AG, Furlan RLE. Sulfur in Dynamic Covalent Chemistry. Angew Chem Int Ed Engl 2022; 61:e202201168. [PMID: 35447003 DOI: 10.1002/anie.202201168] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Indexed: 12/21/2022]
Abstract
Sulfur has been important in dynamic covalent chemistry (DCC) since the beginning of the field. Mainly as part of disulfides and thioesters, dynamic sulfur-based bonds (DSBs) have a leading role in several remarkable reactions. Part of this success is due to the almost ideal properties of DSBs for the preparation of dynamic covalent systems, including high reactivity and good reversibility under mild aqueous conditions, the possibility of exploiting supramolecular interactions, access to isolable structures, and easy experimental control to turn the reaction on/off. DCC is currently witnessing an increase in the importance of DSBs. The chemical flexibility offered by DSBs opens the door to multiple applications. This Review presents an overview of all the DSBs used in DCC, their applications, and remarks on the interesting properties that they confer on dynamic chemical systems, especially those containing several DSBs.
Collapse
Affiliation(s)
- A Gastón Orrillo
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, CONICET, Suipacha 531, Rosario, S2002LRK, Argentina
| | - Ricardo L E Furlan
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, CONICET, Suipacha 531, Rosario, S2002LRK, Argentina
| |
Collapse
|
2
|
Orrillo AG, Furlan RLE. Sulfur in Dynamic Covalent Chemistry. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202201168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Alfredo Gastón Orrillo
- Universidad Nacional de Rosario Facultad de Ciencias Bioquimicas y Farmaceuticas Organic Chemistry Suipacha 530 2000 Rosario ARGENTINA
| | - Ricardo L. E. Furlan
- Universidad Nacional de Rosario Facultad de Ciencias Bioquimicas y Farmaceuticas Organic Chemistry Suipacha 530 2000 Rosario ARGENTINA
| |
Collapse
|
3
|
Mouchbahani-Constance S, Sharif-Naeini R. Proteomic and Transcriptomic Techniques to Decipher the Molecular Evolution of Venoms. Toxins (Basel) 2021; 13:154. [PMID: 33669432 PMCID: PMC7920473 DOI: 10.3390/toxins13020154] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2021] [Revised: 02/06/2021] [Accepted: 02/10/2021] [Indexed: 12/24/2022] Open
Abstract
Nature's library of venoms is a vast and untapped resource that has the potential of becoming the source of a wide variety of new drugs and therapeutics. The discovery of these valuable molecules, hidden in diverse collections of different venoms, requires highly specific genetic and proteomic sequencing techniques. These have been used to sequence a variety of venom glands from species ranging from snakes to scorpions, and some marine species. In addition to identifying toxin sequences, these techniques have paved the way for identifying various novel evolutionary links between species that were previously thought to be unrelated. Furthermore, proteomics-based techniques have allowed researchers to discover how specific toxins have evolved within related species, and in the context of environmental pressures. These techniques allow groups to discover novel proteins, identify mutations of interest, and discover new ways to modify toxins for biomimetic purposes and for the development of new therapeutics.
Collapse
Affiliation(s)
| | - Reza Sharif-Naeini
- Department of Physiology and Cell Information Systems Group, Alan Edwards Center for Research on Pain, McGill University, Montreal, QC H3A 0G4, Canada;
| |
Collapse
|
4
|
Dumartin M, Septavaux J, Donnier-Maréchal M, Jeamet E, Dumont E, Perret F, Vial L, Leclaire J. The dark side of disulfide-based dynamic combinatorial chemistry. Chem Sci 2020; 11:8151-8156. [PMID: 34094174 PMCID: PMC8163284 DOI: 10.1039/d0sc02399j] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
Abstract
During the last two decades, disulfide-based dynamic combinatorial chemistry has been extensively used in the field of molecular recognition to deliver artificial receptors for molecules of biological interest. Commonly, the nature of library members and their relative amounts are provided from HPLC-MS analysis of the libraries, allowing the identification of potential binders for a target (bio)molecule. By re-investigating dynamic combinatorial libraries generated from a simple 2,5-dicarboxy-1,4-dithiophenol building block in water, we herein demonstrated that multiple analytical tools were actually necessary in order to comprehensively describe the libraries in terms of size, stereochemistry, affinity, selectivity, and finally to get a true grasp on the different phenomena at work within dynamic combinatorial systems. We show that multiple analytical tools are necessary in order to describe the different phenomena within disulfide-based dynamic combinatorial libraries in terms of size, stereochemistry, affinity and selectivity.![]()
Collapse
Affiliation(s)
- Mélissa Dumartin
- Univ. Lyon, Univ. Lyon 1, CNRS, INSA, CPE, ICBMS F-69622 Lyon France
| | - Jean Septavaux
- Univ. Lyon, Univ. Lyon 1, CNRS, INSA, CPE, ICBMS F-69622 Lyon France .,Secoya Technologies, Louvain-La-Neuve 1348 Belgium
| | | | - Emeric Jeamet
- Univ. Lyon, Univ. Lyon 1, CNRS, INSA, CPE, ICBMS F-69622 Lyon France
| | - Elise Dumont
- ENS Lyon, Univ. Lyon 1, CNRS, Laboratoire de Chimie F-69364 France.,Institut Universitaire de France 5 rue Descartes 75005 Paris France
| | - Florent Perret
- Univ. Lyon, Univ. Lyon 1, CNRS, INSA, CPE, ICBMS F-69622 Lyon France
| | - Laurent Vial
- Univ. Lyon, Univ. Lyon 1, CNRS, INSA, CPE, ICBMS F-69622 Lyon France
| | - Julien Leclaire
- Univ. Lyon, Univ. Lyon 1, CNRS, INSA, CPE, ICBMS F-69622 Lyon France
| |
Collapse
|
5
|
Jia C, Qi D, Zhang Y, Rissanen K, Li J. Strategies for Exploring Functions from Dynamic Combinatorial Libraries. CHEMSYSTEMSCHEM 2020. [DOI: 10.1002/syst.202000019] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Chunman Jia
- Hainan Provincial Key Lab of Fine ChemKey laboratory of Advanced Materials of Tropical Island Resources of Ministry of EducationHainan University Haikou 570228 China
| | - Dawei Qi
- MediCity Research LaboratoryUniversity of Turku Tykistökatu 6 20520 Turku Finland
| | - Yucang Zhang
- Hainan Provincial Key Lab of Fine ChemKey laboratory of Advanced Materials of Tropical Island Resources of Ministry of EducationHainan University Haikou 570228 China
| | - Kari Rissanen
- Department of ChemistryUniversity of Jyväskylä P.O. Box 35 40014 Jyväskylä Finland
| | - Jianwei Li
- Hainan Provincial Key Lab of Fine ChemKey laboratory of Advanced Materials of Tropical Island Resources of Ministry of EducationHainan University Haikou 570228 China
- MediCity Research LaboratoryUniversity of Turku Tykistökatu 6 20520 Turku Finland
| |
Collapse
|
6
|
Belal K, Stoffelbach F, Lyskawa J, Fumagalli M, Hourdet D, Marcellan A, Smet LD, de la Rosa VR, Cooke G, Hoogenboom R, Woisel P. Recognition-Mediated Hydrogel Swelling Controlled by Interaction with a Negative Thermoresponsive LCST Polymer. Angew Chem Int Ed Engl 2016; 55:13974-13978. [PMID: 27730718 PMCID: PMC5113761 DOI: 10.1002/anie.201605630] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2016] [Revised: 07/23/2016] [Indexed: 01/16/2023]
Abstract
Most polymeric thermoresponsive hydrogels contract upon heating beyond the lower critical solution temperature (LCST) of the polymers used. Herein, we report a supramolecular hydrogel system that shows the opposite temperature dependence. When the non-thermosesponsive hydrogel NaphtGel, containing dialkoxynaphthalene guest molecules, becomes complexed with the tetra cationic macrocyclic host CBPQT4+ , swelling occurred as a result of host-guest complex formation leading to charge repulsion between the host units, as well as an osmotic contribution of chloride counter-ions embedded in the network. The immersion of NaphtGel in a solution of poly(N-isopropylacrylamide) with tetrathiafulvalene (TTF) end groups complexed with CBPQT4+ induced positive thermoresponsive behaviour. The LCST-induced dethreading of the polymer-based pseudorotaxane upon heating led to transfer of the CBPQT4+ host and a concomitant swelling of NaphtGel. Subsequent cooling led to reformation of the TTF-based host-guest complexes in solution and contraction of the hydrogel.
Collapse
Affiliation(s)
- Khaled Belal
- Unité des Matériaux et Transformations, UMR CNRS 8207, ENSCL, Equipe Ingénierie des Systèmes Polymères (ISP), 59655, Villeneuve O'Ascq Cedex, France
| | - François Stoffelbach
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, Institut Parisien de Chimie Moléculaire, UMR 8232, Equipe: chimie des polymères F-, 75252, Paris Cedex 05, France
| | - Joël Lyskawa
- Unité des Matériaux et Transformations, UMR CNRS 8207, ENSCL, Equipe Ingénierie des Systèmes Polymères (ISP), 59655, Villeneuve O'Ascq Cedex, France
| | - Matthieu Fumagalli
- ESPCI ParisTech (PSL Research University) and UPMC Univ. Paris 06 (Sorbonne Universités), Sciences et Ingénierie de la Matière Molle (CNRS UMR 7615), 10 Rue Vauquelin, 75005, Paris, France
| | - Dominique Hourdet
- ESPCI ParisTech (PSL Research University) and UPMC Univ. Paris 06 (Sorbonne Universités), Sciences et Ingénierie de la Matière Molle (CNRS UMR 7615), 10 Rue Vauquelin, 75005, Paris, France
| | - Alba Marcellan
- ESPCI ParisTech (PSL Research University) and UPMC Univ. Paris 06 (Sorbonne Universités), Sciences et Ingénierie de la Matière Molle (CNRS UMR 7615), 10 Rue Vauquelin, 75005, Paris, France
| | - Lieselot De Smet
- Unité des Matériaux et Transformations, UMR CNRS 8207, ENSCL, Equipe Ingénierie des Systèmes Polymères (ISP), 59655, Villeneuve O'Ascq Cedex, France
- Supramolecular Chemistry Group, Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281 S4-bis, 9000, Ghent, Belgium
| | - Victor R de la Rosa
- Supramolecular Chemistry Group, Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281 S4-bis, 9000, Ghent, Belgium
| | - Graeme Cooke
- WestCHEM, School of Chemistry, University of Glasgow, Glasgow, G12 8QQ, UK.
| | - Richard Hoogenboom
- Supramolecular Chemistry Group, Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281 S4-bis, 9000, Ghent, Belgium.
| | - Patrice Woisel
- Unité des Matériaux et Transformations, UMR CNRS 8207, ENSCL, Equipe Ingénierie des Systèmes Polymères (ISP), 59655, Villeneuve O'Ascq Cedex, France.
| |
Collapse
|
7
|
Belal K, Stoffelbach F, Lyskawa J, Fumagalli M, Hourdet D, Marcellan A, Smet LD, de la Rosa VR, Cooke G, Hoogenboom R, Woisel P. Recognition-Mediated Hydrogel Swelling Controlled by Interaction with a Negative Thermoresponsive LCST Polymer. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201605630] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Khaled Belal
- Unité des Matériaux et Transformations, UMR CNRS 8207, ENSCL; Equipe Ingénierie des Systèmes Polymères (ISP); 59655 Villeneuve O'Ascq Cedex France
| | - François Stoffelbach
- Sorbonne Universités, UPMC Univ Paris 06, CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232, Equipe: chimie des polymères F-; 75252 Paris Cedex 05 France
| | - Joël Lyskawa
- Unité des Matériaux et Transformations, UMR CNRS 8207, ENSCL; Equipe Ingénierie des Systèmes Polymères (ISP); 59655 Villeneuve O'Ascq Cedex France
| | - Matthieu Fumagalli
- ESPCI ParisTech (PSL Research University) and UPMC Univ. Paris 06 (Sorbonne Universités); Sciences et Ingénierie de la Matière Molle (CNRS UMR 7615); 10 Rue Vauquelin 75005 Paris France
| | - Dominique Hourdet
- ESPCI ParisTech (PSL Research University) and UPMC Univ. Paris 06 (Sorbonne Universités); Sciences et Ingénierie de la Matière Molle (CNRS UMR 7615); 10 Rue Vauquelin 75005 Paris France
| | - Alba Marcellan
- ESPCI ParisTech (PSL Research University) and UPMC Univ. Paris 06 (Sorbonne Universités); Sciences et Ingénierie de la Matière Molle (CNRS UMR 7615); 10 Rue Vauquelin 75005 Paris France
| | - Lieselot De Smet
- Unité des Matériaux et Transformations, UMR CNRS 8207, ENSCL; Equipe Ingénierie des Systèmes Polymères (ISP); 59655 Villeneuve O'Ascq Cedex France
- Supramolecular Chemistry Group; Department of Organic and Macromolecular Chemistry; Ghent University; Krijgslaan 281 S4-bis 9000 Ghent Belgium
| | - Victor R. de la Rosa
- Supramolecular Chemistry Group; Department of Organic and Macromolecular Chemistry; Ghent University; Krijgslaan 281 S4-bis 9000 Ghent Belgium
| | - Graeme Cooke
- WestCHEM, School of Chemistry; University of Glasgow; Glasgow G12 8QQ UK
| | - Richard Hoogenboom
- Supramolecular Chemistry Group; Department of Organic and Macromolecular Chemistry; Ghent University; Krijgslaan 281 S4-bis 9000 Ghent Belgium
| | - Patrice Woisel
- Unité des Matériaux et Transformations, UMR CNRS 8207, ENSCL; Equipe Ingénierie des Systèmes Polymères (ISP); 59655 Villeneuve O'Ascq Cedex France
| |
Collapse
|
8
|
Kosikova T, Mackenzie H, Philp D. Probing the Limits of Selectivity in a Recognition-Mediated Reaction Network Embedded within a Dynamic Covalent Library. Chemistry 2015; 22:1831-9. [DOI: 10.1002/chem.201503740] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2015] [Revised: 11/30/2015] [Indexed: 12/15/2022]
Affiliation(s)
- Tamara Kosikova
- School of Chemistry and EaStCHEM; University of St. Andrews, North Haugh; St. Andrews KY16 9ST UK
| | - Harry Mackenzie
- School of Chemistry and EaStCHEM; University of St. Andrews, North Haugh; St. Andrews KY16 9ST UK
- UCB; 216 Bath Road Slough Berks SL1 3WE UK
| | - Douglas Philp
- School of Chemistry and EaStCHEM; University of St. Andrews, North Haugh; St. Andrews KY16 9ST UK
| |
Collapse
|
9
|
Harnessing dynamic combinatorial chemistry in the search for new ligands for protein targets. Future Med Chem 2015; 7:2095-8. [DOI: 10.4155/fmc.15.146] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
|
10
|
Paolantoni D, Cantel S, Dumy P, Ulrich S. A dynamic combinatorial approach for identifying side groups that stabilize DNA-templated supramolecular self-assemblies. Int J Mol Sci 2015; 16:3609-25. [PMID: 25667976 PMCID: PMC4346916 DOI: 10.3390/ijms16023609] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Revised: 01/16/2015] [Accepted: 01/23/2015] [Indexed: 12/16/2022] Open
Abstract
DNA-templated self-assembly is an emerging strategy for generating functional supramolecular systems, which requires the identification of potent multi-point binding ligands. In this line, we recently showed that bis-functionalized guanidinium compounds can interact with ssDNA and generate a supramolecular complex through the recognition of the phosphodiester backbone of DNA. In order to probe the importance of secondary interactions and to identify side groups that stabilize these DNA-templated self-assemblies, we report herein the implementation of a dynamic combinatorial approach. We used an in situ fragment assembly process based on reductive amination and tested various side groups, including amino acids. The results reveal that aromatic and cationic side groups participate in secondary supramolecular interactions that stabilize the complexes formed with ssDNA.
Collapse
Affiliation(s)
- Delphine Paolantoni
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS-Université de Montpellier, ENSCM, Ecole Nationale Supérieure de Chimie de Montpellier, 8 Rue de l'Ecole Normale, Montpellier Cedex 5 34296, France.
| | - Sonia Cantel
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS-Université de Montpellier, ENSCM, Ecole Nationale Supérieure de Chimie de Montpellier, 8 Rue de l'Ecole Normale, Montpellier Cedex 5 34296, France.
| | - Pascal Dumy
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS-Université de Montpellier, ENSCM, Ecole Nationale Supérieure de Chimie de Montpellier, 8 Rue de l'Ecole Normale, Montpellier Cedex 5 34296, France.
| | - Sébastien Ulrich
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS-Université de Montpellier, ENSCM, Ecole Nationale Supérieure de Chimie de Montpellier, 8 Rue de l'Ecole Normale, Montpellier Cedex 5 34296, France.
| |
Collapse
|
11
|
Herrmann A. Dynamic combinatorial/covalent chemistry: a tool to read, generate and modulate the bioactivity of compounds and compound mixtures. Chem Soc Rev 2014; 43:1899-933. [PMID: 24296754 DOI: 10.1039/c3cs60336a] [Citation(s) in RCA: 281] [Impact Index Per Article: 28.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Reversible covalent bond formation under thermodynamic control adds reactivity to self-assembled supramolecular systems, and is therefore an ideal tool to assess complexity of chemical and biological systems. Dynamic combinatorial/covalent chemistry (DCC) has been used to read structural information by selectively assembling receptors with the optimum molecular fit around a given template from a mixture of reversibly reacting building blocks. This technique allows access to efficient sensing devices and the generation of new biomolecules, such as small molecule receptor binders for drug discovery, but also larger biomimetic polymers and macromolecules with particular three-dimensional structural architectures. Adding a kinetic factor to a thermodynamically controlled equilibrium results in dynamic resolution and in self-sorting and self-replicating systems, all of which are of major importance in biological systems. Furthermore, the temporary modification of bioactive compounds by reversible combinatorial/covalent derivatisation allows control of their release and facilitates their transport across amphiphilic self-assembled systems such as artificial membranes or cell walls. The goal of this review is to give a conceptual overview of how the impact of DCC on supramolecular assemblies at different levels can allow us to understand, predict and modulate the complexity of biological systems.
Collapse
Affiliation(s)
- Andreas Herrmann
- Firmenich SA, Division Recherche et Développement, Route des Jeunes 1, B. P. 239, CH-1211 Genève 8, Switzerland.
| |
Collapse
|
12
|
Matache M, Bogdan E, Hădade ND. Selective Host Molecules Obtained by Dynamic Adaptive Chemistry. Chemistry 2014; 20:2106-31. [DOI: 10.1002/chem.201303504] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
|
13
|
Misuraca MC, Moulin E, Ruff Y, Giuseppone N. Experimental and theoretical methods for the analyses of dynamic combinatorial libraries. NEW J CHEM 2014. [DOI: 10.1039/c4nj00304g] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Progresses in spatial and temporal analytical tools open new avenues for the study and control of increasingly complex chemical systems.
Collapse
Affiliation(s)
- Maria Cristina Misuraca
- SAMS research group – University of Strasbourg – Institut Charles Sadron
- CNRS
- 67034 Strasbourg Cedex 2, France
| | - Emilie Moulin
- SAMS research group – University of Strasbourg – Institut Charles Sadron
- CNRS
- 67034 Strasbourg Cedex 2, France
| | - Yves Ruff
- SAMS research group – University of Strasbourg – Institut Charles Sadron
- CNRS
- 67034 Strasbourg Cedex 2, France
| | - Nicolas Giuseppone
- SAMS research group – University of Strasbourg – Institut Charles Sadron
- CNRS
- 67034 Strasbourg Cedex 2, France
| |
Collapse
|
14
|
Ulrich S, Dumy P. Probing secondary interactions in biomolecular recognition by dynamic combinatorial chemistry. Chem Commun (Camb) 2014; 50:5810-25. [DOI: 10.1039/c4cc00263f] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
|
15
|
Li J, Nowak P, Otto S. Dynamic Combinatorial Libraries: From Exploring Molecular Recognition to Systems Chemistry. J Am Chem Soc 2013; 135:9222-39. [DOI: 10.1021/ja402586c] [Citation(s) in RCA: 353] [Impact Index Per Article: 32.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Jianwei Li
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen, Nijenborgh 4, 9747
AG Groningen, The Netherlands
| | - Piotr Nowak
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen, Nijenborgh 4, 9747
AG Groningen, The Netherlands
| | - Sijbren Otto
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen, Nijenborgh 4, 9747
AG Groningen, The Netherlands
| |
Collapse
|
16
|
Ruggi A, Cacciapaglia R, Di Stefano S, Bodo E, Ugozzoli F. Naphthalenophane formaldehyde acetals as candidate structures for the generation of dynamic libraries via transacetalation processes. Tetrahedron 2013. [DOI: 10.1016/j.tet.2013.01.080] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
17
|
Zhang Y, Hu L, Ramström O. Double parallel dynamic resolution through lipase-catalyzed asymmetric transformation. Chem Commun (Camb) 2013; 49:1805-7. [DOI: 10.1039/c3cc38203f] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
18
|
Gasparini G, Rastrelli F, Prins LJ. Dynamic covalent capture of hydrazides by a phosphonate-target immobilized on resin. Org Biomol Chem 2013; 11:6580-7. [DOI: 10.1039/c3ob41301b] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
19
|
Phillips HIA, Chernikov AV, Fletcher NC, Ashcroft AE, Ault JR, Filby MH, Wilson AJ. The use of electrospray mass spectrometry to determine speciation in a dynamic combinatorial library for anion recognition. Chemistry 2012; 18:13733-42. [PMID: 22996943 PMCID: PMC3569615 DOI: 10.1002/chem.201201302] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2012] [Revised: 07/26/2012] [Indexed: 01/10/2023]
Abstract
The composition of a dynamic mixture of similar 2,2'-bipyridine complexes of iron(II) bearing either an amide (5-benzylamido-2,2'-bipyridine and 5-(2-methoxyethane)amido-2,2'-bipyridine) or an ester (2,2'-bipyridine-5-carboxylic acid benzylester and 2,2'-bipyridine-5-carboxylic acid 2-methoxyethane ester) side chain have been evaluated by electrospray mass spectroscopy in acetonitrile. The time taken for the complexes to come to equilibrium appears to be dependent on the counteranion, with chloride causing a rapid redistribution of two preformed heteroleptic complexes (of the order of 1 hour), whereas the time it takes in the presence of tetrafluoroborate salts is in excess of 24 h. Similarly the final distribution of products is dependent on the anion present, with the presence of chloride, and to a lesser extent bromide, preferring three amide-functionalized ligands, and a slight preference for an appended benzyl over a methoxyethyl group. Furthermore, for the first time, this study shows that the distribution of a dynamic library of metal complexes monitored by ESI-MS can adapt following the introduction of a different anion, in this case tetrabutylammonium chloride to give the most favoured heteroleptic complex despite the increasing ionic strength of the solution.
Collapse
Affiliation(s)
- Hazel I A Phillips
- School of Chemistry and Chemical Engineering, Queen's University BelfastStranmillis Road, Belfast BT9 5AG (UK)
| | - Aleksey V Chernikov
- School of Chemistry and Chemical Engineering, Queen's University BelfastStranmillis Road, Belfast BT9 5AG (UK)
| | - Nicholas C Fletcher
- School of Chemistry and Chemical Engineering, Queen's University BelfastStranmillis Road, Belfast BT9 5AG (UK)
| | - Alison E Ashcroft
- Astbury Centre for Structural Molecular Biology, University of Leeds InstitutionWoodhouse Lane, Leeds LS2 9JT (UK)
| | - James R Ault
- Astbury Centre for Structural Molecular Biology, University of Leeds InstitutionWoodhouse Lane, Leeds LS2 9JT (UK)
| | - Maria H Filby
- School of Chemistry, University of Leeds InstitutionWoodhouse Lane, Leeds LS2 9JT (UK)
| | - Andrew J Wilson
- Astbury Centre for Structural Molecular Biology, University of Leeds InstitutionWoodhouse Lane, Leeds LS2 9JT (UK)
- School of Chemistry, University of Leeds InstitutionWoodhouse Lane, Leeds LS2 9JT (UK)
| |
Collapse
|
20
|
Sakulsombat M, Zhang Y, Ramström O. Dynamic Asymmetric Hemithioacetal Transformation by Lipase-Catalyzed γ-Lactonization: In Situ Tandem Formation of 1,3-Oxathiolan-5-one Derivatives. Chemistry 2012; 18:6129-32. [DOI: 10.1002/chem.201102139] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2011] [Revised: 10/27/2011] [Indexed: 11/06/2022]
|
21
|
Gromova AV, Ciszewski JM, Miller BL. Ternary resin-bound Dynamic Combinatorial Chemistry. Chem Commun (Camb) 2012; 48:2131-3. [PMID: 22240966 DOI: 10.1039/c2cc17192a] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The ability to carry out simultaneous orthogonal exchange chemistries has opened new opportunities for increasing the numerical and structural diversity accessible to Dynamic Combinatorial Chemistry. We present proof-of-concept experiments demonstrating this concept is transferrable to resin-bound DCC, facilitating the generation and analysis of libraries with greater structural diversity.
Collapse
Affiliation(s)
- Anna V Gromova
- Department of Dermatology, University of Rochester Medical Center, Rochester, New York, USA
| | | | | |
Collapse
|
22
|
Berrocal JA, Cacciapaglia R, Stefano SD, Mandolini L. Target-induced amplification in a dynamic library of macrocycles. A quantitative study. NEW J CHEM 2012. [DOI: 10.1039/c1nj20801b] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
|
23
|
Roy L, Case MA. Recursively Enriched Dynamic Combinatorial Libraries for the Self-Selection of Optimally Stable Proteins. J Phys Chem B 2011; 115:2454-64. [DOI: 10.1021/jp111652n] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Liton Roy
- Department of Chemistry, The University of Vermont, Burlington, Vermont 05405,
United States
| | - Martin A. Case
- Department of Chemistry, The University of Vermont, Burlington, Vermont 05405,
United States
| |
Collapse
|
24
|
Sakulsombat M, Vongvilai P, Ramström O. In situ evaluation of lipase performances through dynamic asymmetric cyanohydrin resolution. Org Biomol Chem 2011; 9:1112-7. [PMID: 21170452 DOI: 10.1039/c0ob00759e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
A dynamic resolution process based on multiple reversible cyanohydrin formation coupled to lipase-mediated transesterification is demonstrated. The resulting process resulted in the efficient evaluation of complex lipase performances in asymmetric cyanohydrin acylate synthesis. Dynamic systems were generated and resolved in situ, and the effects of the reaction conditions could be directly monitored for the overall system. By this concept, the enzyme activity, chemo- and stereoselectivity for all involved substrates could be simultaneously evaluated.
Collapse
Affiliation(s)
- Morakot Sakulsombat
- Department of Chemistry, KTH-Royal Institute of Technology, Teknikringen 30, S-10044, Stockholm, Sweden
| | | | | |
Collapse
|
25
|
Hunt RAR, Otto S. Dynamic combinatorial libraries: new opportunities in systems chemistry. Chem Commun (Camb) 2011; 47:847-58. [PMID: 21116521 DOI: 10.1039/c0cc03759a] [Citation(s) in RCA: 174] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Rosemary A R Hunt
- University of Cambridge, Department of Chemistry, Lensfield Road, Cambridge, CB2 1EW, UK
| | | |
Collapse
|
26
|
Berrocal JA, Cacciapaglia R, Stefano SD. A well-behaved dynamic library of cyclophane formaldehyde acetals incorporating diphenylmethane units. Org Biomol Chem 2011; 9:8190-4. [DOI: 10.1039/c1ob06323e] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
|
27
|
Reversible covalent chemistries compatible with the principles of constitutional dynamic chemistry: new reactions to create more diversity. Top Curr Chem (Cham) 2011; 322:291-314. [PMID: 22025070 DOI: 10.1007/128_2011_277] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
An approach to make chemical diversity space more manageable is to search for smaller molecules, or fragments, and then combine or elaborate these fragments. Dynamic Combinatorial Chemistry (DCC) is a powerful approach whereby a number of molecular elements each with binding potential can be reversibly combined via covalent or noncovalent linkages to generate a dynamic library of products under thermodynamic equilibrium. Once a target molecule has been added, the distribution of products can be shifted to favor products that bind to the target. Thus the approach can be employed to identify products that selectively recognize the target. Although the size of the repertoire of reversible covalent reactions suitable for DCC has increased significantly over the past 5-10 years, the discovery of new reactions that satisfy all the criteria of reversibility and biocompatibility remains an exciting challenge for chemists. Increasing the number of chemical reactions will enable the engineering of larger and more diverse DCLs, which remains a key step toward a broader use of DCC. In this review, we aim to provide a nonexhaustive list of reversible covalent reactions that are compatible with the concept of DCC, focusing mainly on the most recent examples that were reported in the literature in the past 5 years.
Collapse
|
28
|
Buchs née Levrand B, Godin G, Trachsel A, de Saint Laumer JY, Lehn JM, Herrmann A. Reversible Aminal Formation: Controlling the Evaporation of Bioactive Volatiles by Dynamic Combinatorial/Covalent Chemistry. European J Org Chem 2010. [DOI: 10.1002/ejoc.201001433] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|