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Raczyńska ED, Gal JF, Maria PC. Strong Bases and beyond: The Prominent Contribution of Neutral Push-Pull Organic Molecules towards Superbases in the Gas Phase. Int J Mol Sci 2024; 25:5591. [PMID: 38891779 PMCID: PMC11172071 DOI: 10.3390/ijms25115591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 05/14/2024] [Accepted: 05/16/2024] [Indexed: 06/21/2024] Open
Abstract
In this review, the principles of gas-phase proton basicity measurements and theoretical calculations are recalled as a reminder of how the basicity PA/GB scale, based on Brønsted-Lowry theory, was constructed in the gas-phase (PA-proton affinity and/or GB-gas-phase basicity in the enthalpy and Gibbs energy scale, respectively). The origins of exceptionally strong gas-phase basicity of some organic nitrogen bases containing N-sp3 (amines), N-sp2 (imines, amidines, guanidines, polyguanides, phosphazenes), and N-sp (nitriles) are rationalized. In particular, the role of push-pull nitrogen bases in the development of the gas-phase basicity in the superbasicity region is emphasized. Some reasons for the difficulties in measurements for poly-functional nitrogen bases are highlighted. Various structural phenomena being in relation with gas-phase acid-base equilibria that should be considered in quantum-chemical calculations of PA/GB parameters are discussed. The preparation methods for strong organic push-pull bases containing a N-sp2 site of protonation are briefly reviewed. Finally, recent trends in research on neutral organic superbases, leaning toward catalytic and other remarkable applications, are underlined.
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Affiliation(s)
- Ewa Daniela Raczyńska
- Department of Chemistry, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska 159c, 02-776 Warsaw, Poland
| | - Jean-François Gal
- Institut de Chimie de Nice, UMR 7272, Université Côte d’Azur, Parc Valrose, 06108 Nice, France;
| | - Pierre-Charles Maria
- Institut de Chimie de Nice, UMR 7272, Université Côte d’Azur, Parc Valrose, 06108 Nice, France;
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2
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Kolupaeva EV, Dzhangiryan NA, Pozharskii AF, Demidov OP, Ozeryanskii VA. Substitution reactions in the acenaphthene analog of quino[7,8- h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination. Beilstein J Org Chem 2024; 20:243-253. [PMID: 38352068 PMCID: PMC10862132 DOI: 10.3762/bjoc.20.24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 01/22/2024] [Indexed: 02/16/2024] Open
Abstract
The possibility of functionalization of dipyrido[3,2-e:2',3'-h]acenaphthene containing a quino[7,8-h]quinoline fragment and being a highly basic diazine analog of 1,8-bis(dimethylamino)naphthalene ("proton sponge") has been studied for the first time. In addition to the pronounced tendency of the title compound to form associates with an intramolecular hydrogen bond of the NHN type (new examples with the participation of pyridine rings, including self-associates are shown) and its inertness to amination reactions of the pyridine rings, the naphthalene core at positions 5(8) and the CH2CH2 bridge (dehydrogenation) undergo chemical modifications under mild conditions, giving the corresponding acenaphthylenes. The latter can also be obtained in an unusual way by tele-elimination from 5,8-dibromodipyridoacenaphthene by reaction with neutral or anionic bases.
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Affiliation(s)
- Ekaterina V Kolupaeva
- Department of Organic Chemistry, Southern Federal University, Zorge str. 7, 344090 Rostov-on-Don, Russian Federation
| | - Narek A Dzhangiryan
- Department of Organic Chemistry, Southern Federal University, Zorge str. 7, 344090 Rostov-on-Don, Russian Federation
| | - Alexander F Pozharskii
- Department of Organic Chemistry, Southern Federal University, Zorge str. 7, 344090 Rostov-on-Don, Russian Federation
| | - Oleg P Demidov
- Department of Chemistry and Pharmacy, North Caucasus Federal University, Pushkin str. 1a, 355017 Stavropol, Russian Federation
| | - Valery A Ozeryanskii
- Department of Organic Chemistry, Southern Federal University, Zorge str. 7, 344090 Rostov-on-Don, Russian Federation
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Saeidian H, Barfinejad E, Vessally E. Effect of aromaticity and ring strain on proton affinity of aziridine and amidine skeletons: a DFT study. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2020. [DOI: 10.1007/s13738-020-01899-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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4
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Ayoubi-Chianeh M, Kassaee MZ. Novel silicon super bases at DFT level of theory: effects of fused benzene rings on the basicity of 2,4,6-cycloheptatrienesilylene. RESEARCH ON CHEMICAL INTERMEDIATES 2019. [DOI: 10.1007/s11164-019-03856-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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5
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Biswas AK, Si MK, Ganguly B. The effect of σ/π, σ and π donors on the basicity of silylene superbases: a density functional theory study. NEW J CHEM 2018. [DOI: 10.1039/c8nj00263k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this study, we examined computationally that the combination of π-and σ-donor substituents results in higher basicity of silylene compounds compared to the usage of π-donor substituents alone.
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Affiliation(s)
- Abul Kalam Biswas
- Analytical Discipline and Centralized Instrument Facility
- Academy of Scientific and Innovative Research
- CSIR–Central Salt & Marine Chemicals Research Institute
- Bhavnagar
- India
| | - Mrinal Kanti Si
- Analytical Discipline and Centralized Instrument Facility
- Academy of Scientific and Innovative Research
- CSIR–Central Salt & Marine Chemicals Research Institute
- Bhavnagar
- India
| | - Bishwajit Ganguly
- Analytical Discipline and Centralized Instrument Facility
- Academy of Scientific and Innovative Research
- CSIR–Central Salt & Marine Chemicals Research Institute
- Bhavnagar
- India
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Biswas AK, Ganguly B. Revealing Germylene Compounds to Attain Superbasicity with Sigma Donor Substituents: A Density Functional Theory Study. Chemistry 2017; 23:2700-2705. [DOI: 10.1002/chem.201605209] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Abul Kalam Biswas
- Analytical Discipline and Centralized Instrument Facility; Academy of Scientific and Innovative Research; CSIR-Central Salt and Marine Chemicals Research Institute; Bhavnagar- 364002 India
| | - Bishwajit Ganguly
- Analytical Discipline and Centralized Instrument Facility; Academy of Scientific and Innovative Research; CSIR-Central Salt and Marine Chemicals Research Institute; Bhavnagar- 364002 India
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7
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Raczyńska ED, Gal JF, Maria PC. Enhanced Basicity of Push-Pull Nitrogen Bases in the Gas Phase. Chem Rev 2016; 116:13454-13511. [PMID: 27739663 DOI: 10.1021/acs.chemrev.6b00224] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Nitrogen bases containing one or more pushing amino-group(s) directly linked to a pulling cyano, imino, or phosphoimino group, as well as those in which the pushing and pulling moieties are separated by a conjugated spacer (C═X)n, where X is CH or N, display an exceptionally strong basicity. The n-π conjugation between the pushing and pulling groups in such systems lowers the basicity of the pushing amino-group(s) and increases the basicity of the pulling cyano, imino, or phosphoimino group. In the gas phase, most of the so-called push-pull nitrogen bases exhibit a very high basicity. This paper presents an analysis of the exceptional gas-phase basicity, mostly in terms of experimental data, in relation with structure and conjugation of various subfamilies of push-pull nitrogen bases: nitriles, azoles, azines, amidines, guanidines, vinamidines, biguanides, and phosphazenes. The strong basicity of biomolecules containing a push-pull nitrogen substructure, such as bioamines, amino acids, and peptides containing push-pull side chains, nucleobases, and their nucleosides and nucleotides, is also analyzed. Progress and perspectives of experimental determinations of GBs and PAs of highly basic compounds, termed as "superbases", are presented and benchmarked on the basis of theoretical calculations on existing or hypothetical molecules.
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Affiliation(s)
- Ewa D Raczyńska
- Department of Chemistry, Warsaw University of Life Sciences (SGGW) , ul. Nowoursynowska 159c, 02-776 Warszawa, Poland
| | - Jean-François Gal
- Institut de Chimie de Nice (ICN) - UMR CNRS 7272, University Nice Sophia Antipolis , Parc Valrose, 06108 Nice Cedex 2, France
| | - Pierre-Charles Maria
- Institut de Chimie de Nice (ICN) - UMR CNRS 7272, University Nice Sophia Antipolis , Parc Valrose, 06108 Nice Cedex 2, France
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Kaljurand I, Saame J, Rodima T, Koppel I, Koppel IA, Kögel JF, Sundermeyer J, Köhn U, Coles MP, Leito I. Experimental Basicities of Phosphazene, Guanidinophosphazene, and Proton Sponge Superbases in the Gas Phase and Solution. J Phys Chem A 2016; 120:2591-604. [DOI: 10.1021/acs.jpca.6b01552] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ivari Kaljurand
- Institute
of Chemistry, University of Tartu, Ravila 14a Str, 50411 Tartu, Estonia
| | - Jaan Saame
- Institute
of Chemistry, University of Tartu, Ravila 14a Str, 50411 Tartu, Estonia
| | - Toomas Rodima
- Institute
of Chemistry, University of Tartu, Ravila 14a Str, 50411 Tartu, Estonia
| | - Ivar Koppel
- Institute
of Computer Sciences, University of Tartu, J. Liivi 2 Str, 50409 Tartu, Estonia
| | - Ilmar A. Koppel
- Institute
of Chemistry, University of Tartu, Ravila 14a Str, 50411 Tartu, Estonia
| | - Julius F. Kögel
- Fachbereich
Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße, 35032 Marburg, Germany
| | - Jörg Sundermeyer
- Fachbereich
Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße, 35032 Marburg, Germany
| | - Uwe Köhn
- Institut
für Organische Chemie und Makromolekulare Chemie, Friedrich-Schiller-Universität Jena, Humboldtstraße 10, 07743 Jena, Germany
| | - Martyn P. Coles
- School
of Chemical and Physical Sciences, Victoria University of Wellington, P.O. Box 600, Wellington, New Zealand
| | - Ivo Leito
- Institute
of Chemistry, University of Tartu, Ravila 14a Str, 50411 Tartu, Estonia
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Biswas AK, Lo R, Si MK, Ganguly B. Superbasicity of silylene derivatives achieved via non-covalent intramolecular cation⋯π interactions and exploited as molecular containers for CO2. Phys Chem Chem Phys 2014; 16:12567-75. [DOI: 10.1039/c4cp01394h] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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Biswas AK, Lo R, Ganguly B. First Principles Studies toward the Design of Silylene Superbases: A Density Functional Theory Study. J Phys Chem A 2013; 117:3109-17. [DOI: 10.1021/jp401076j] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Abul Kalam Biswas
- Analytical Discipline and Centralized Instrument Facility, Central Salt & Marine Chemicals Research Institute (Council of Scientific and Industrial Research), Bhavnagar, Gujarat, India 364 002
| | - Rabindranath Lo
- Analytical Discipline and Centralized Instrument Facility, Central Salt & Marine Chemicals Research Institute (Council of Scientific and Industrial Research), Bhavnagar, Gujarat, India 364 002
| | - Bishwajit Ganguly
- Analytical Discipline and Centralized Instrument Facility, Central Salt & Marine Chemicals Research Institute (Council of Scientific and Industrial Research), Bhavnagar, Gujarat, India 364 002
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Mó O, Yáñez M, Alkorta I, Elguero J. Enhancing and modulating the intrinsic acidity of imidazole and pyrazole through beryllium bonds. J Mol Model 2013; 19:4139-45. [PMID: 23292320 DOI: 10.1007/s00894-012-1682-y] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2012] [Accepted: 11/06/2012] [Indexed: 11/30/2022]
Abstract
The structure and electronic properties of the complexes formed by the interaction of imidazole and pyrazole with different BeXH(BeX2) (X = H, Me, F, Cl) derivatives have been investigated via B3LYP/6-311+G(3df,2p)//B3LYP/6-31+G(d,p) calculations. The formation of these azole:BeXH(BeX2) complexes is accompanied by a dramatic enhancement of the intrinsic acidity of the azole, as the deprotonated azole is much more stable after the aforementioned interaction. Most importantly, the increase in acidity is so large that the azole:BeXH or azole:BeX2 complexes behave as NH acids, which are stronger than typical oxyacids such as phosphoric acid and oxalic acid. Interestingly, the increase in acidity can be tuned through appropriate selection of the substituents attached to the Be atom, permitting us to modulate the electron-accepting ability of the BeXH or BeX2 molecule.
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Affiliation(s)
- Otilia Mó
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, Cantoblanco, 28049, Madrid, Spain
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Radić N, Maksić ZB. Basicity of neutral organic superbases with vinamidine structure in gas phase and acetonitrile: a density functional theory study. J PHYS ORG CHEM 2013. [DOI: 10.1002/poc.2980] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Nena Radić
- Quantum Organic Chemistry Group, Division of Organic Chemistry and Biochemistry; Ruđer Bošković Institute; Zagreb; Croatia
| | - Zvonimir B. Maksić
- Quantum Organic Chemistry Group, Division of Organic Chemistry and Biochemistry; Ruđer Bošković Institute; Zagreb; Croatia
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13
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Maksić ZB, Kovačević B, Vianello R. Advances in Determining the Absolute Proton Affinities of Neutral Organic Molecules in the Gas Phase and Their Interpretation: A Theoretical Account. Chem Rev 2012; 112:5240-70. [DOI: 10.1021/cr100458v] [Citation(s) in RCA: 154] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Zvonimir B. Maksić
- Quantum Organic
Chemistry Group, Department of Organic
Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia
| | - Borislav Kovačević
- Quantum Organic
Chemistry Group, Department of Organic
Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia
| | - Robert Vianello
- Quantum Organic
Chemistry Group, Department of Organic
Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia
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Kunetskiy RA, Polyakova SM, Vavřík J, Císařová I, Saame J, Nerut ER, Koppel I, Koppel IA, Kütt A, Leito I, Lyapkalo IM. A New Class of Organosuperbases, N-Alkyl- and N-Aryl-1,3-dialkyl-4,5-dimethylimidazol-2-ylidene Amines: Synthesis, Structure, pKBH+ Measurements, and Properties. Chemistry 2012; 18:3621-30. [DOI: 10.1002/chem.201102249] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2011] [Revised: 12/10/2011] [Indexed: 11/08/2022]
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Lo R, Singh A, Kesharwani MK, Ganguly B. Rational design of a new class of polycyclic organic bases bearing two superbasic sites and their applications in the CO2 capture and activation process. Chem Commun (Camb) 2012; 48:5865-7. [DOI: 10.1039/c2cc18083a] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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16
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Lo R, Ganguly B. First principle studies toward the design of a new class of carbene superbases involving intramolecular H⋯π interactions. Chem Commun (Camb) 2011; 47:7395-7. [DOI: 10.1039/c1cc11366f] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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17
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Lo R, Ganguly B. Exploiting propane-1,3-diimines as building blocks for superbases: a DFT study. NEW J CHEM 2011. [DOI: 10.1039/c1nj20426b] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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