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Nandi SK, Mondal S, Mondal S, Gumtya M, Haldar D. Structure–mechanical property relationship of a pentapeptide crystal. CrystEngComm 2021. [DOI: 10.1039/d1ce00738f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A peptide having miniature (P)310/α-helix conformation, forms intermolecular H-bonded supramolecular helical bundle structure which further self-assembled to interdigited supramolecular sheet-like structure that eventually from the brittle crystal.
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Affiliation(s)
- Sujay Kumar Nandi
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
| | - Saikat Mondal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
- Centre for Advanced Functional Materials (CAFM), Indian Institute of Science Education and Research, Kolkata, Mohanpur-741246, West Bengal, India
| | - Sahabaj Mondal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
| | - Milan Gumtya
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
| | - Debasish Haldar
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
- Centre for Advanced Functional Materials (CAFM), Indian Institute of Science Education and Research, Kolkata, Mohanpur-741246, West Bengal, India
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2
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Chowdhury S, Nandi SK, Podder D, Haldar D. Conformational Heterogeneity and Self-Assembly of α,β,γ-Hybrid Peptides Containing Fenamic Acid: Multistimuli-Responsive Phase-Selective Gelation. ACS OMEGA 2020; 5:2287-2294. [PMID: 32064390 PMCID: PMC7017408 DOI: 10.1021/acsomega.9b03532] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 01/17/2020] [Indexed: 06/10/2023]
Abstract
The effect of fenamic acid-α-aminoisobutyric acid corner motif in α,β,γ-hybrid peptides has been reported. From X-ray single-crystal diffraction studies, it is observed that Phe-containing peptide 1 has an "S"-shaped conformation that is stabilized by two consecutive intramolecular N-H···N hydrogen bonds. However, the tyrosine analogue peptide 2 has an "S"-shaped conformation, which is stabilized by consecutive intramolecular six-member N-H···N and seven-member N-H···O hydrogen bonds. The asymmetric unit of peptide 3 containing m-aminobenzoic acid has two molecules which are stabilized by multiple intermolecular hydrogen-bonding interactions. There are also π-π stacking interactions between the aromatic rings of fenamic acid. The peptides 1 and 2 have a polydisperse microsphere morphology, but peptide 3 has an entangled fiber-like morphology. Peptides 1-3 do not form organogels. However, in the presence of water, the peptide 3 forms a phase-selective instant gel in xylene. The gel exhibits high stability and thermal reversibility. The phase-selective gel of peptide 3 is highly responsive to H2SO4.
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3
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Safiullina AS, Ziganshina SA, Lyadov NM, Klimovitskii AE, Ziganshin MA, Gorbatchuk VV. Role of water in the formation of unusual organogels with cyclo(leucyl-leucyl). SOFT MATTER 2019; 15:3595-3606. [PMID: 30964502 DOI: 10.1039/c9sm00465c] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The key role of water in the formation of cyclo(leucyl-leucyl) organogels was demonstrated. The conditions required for preparation of previously unknown gels with aliphatic hydrocarbons at room temperature were determined. Cyclo(leucyl-leucyl) self-assembles to form different structures depending on the medium used. The molecular organization of gels was studied by the methods of microscopy, spectroscopy and X-ray powder diffractometry. The organogel of cyclo(leucyl-leucyl) can reversibly change volume during the heating/cooling cycle. We showed the possibility of practical application of cyclo(leucyl-leucyl) for water purification. The results obtained give a new insight into the mechanism of gelation with cyclo(dipeptide)-based low-molecular-weight gelators and may be useful for the preparation of new physical gels.
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Affiliation(s)
- Aisylu S Safiullina
- A.M. Butlerov Institute of Chemistry, Kazan Federal University, Kremlevskaya ul. 18, Kazan, 420008, Russia.
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4
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Podder D, Chowdhury SR, Nandi SK, Haldar D. Tripeptide based super-organogelators: structure and function. NEW J CHEM 2019. [DOI: 10.1039/c8nj05578e] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The peptide based super-gelators are highly soluble in non-toxic organic solvent ethanol, the solution is easy to handle and just by spraying the ethanol solution over an oil–water mixture it is able to form an organogel at room temperature.
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Affiliation(s)
- Debasish Podder
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur – 741246
- India
| | - Srayoshi Roy Chowdhury
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur – 741246
- India
| | - Sujay Kumar Nandi
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur – 741246
- India
| | - Debasish Haldar
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur – 741246
- India
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5
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Debnath M, Das T, Podder D, Haldar D. α,ε-Hybrid Peptide Foldamers: Self-Assembly of Peptide with Trans Carbon-Carbon Double Bonds in the Backbone and Its Saturated Analogue. ACS OMEGA 2018; 3:8760-8768. [PMID: 31459008 PMCID: PMC6644893 DOI: 10.1021/acsomega.8b00832] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Accepted: 07/24/2018] [Indexed: 05/02/2023]
Abstract
The effect of geometrically rigid trans α,β-unsaturated ε-amino acids on the structure, folding, and assembly of α,ε-hybrid peptide foldamers has been reported. From single-crystal diffraction analysis, the unsaturated tetrapeptide 1 has stapler-pin-like structure but without intramolecular hydrogen bond. The asymmetric unit has two molecules that are stabilized by multiple intermolecular hydrogen bonding interactions as well as π-π stacking interactions between the aromatic rings of 3-aminocinnamic acid. Peptide 1 does not form organogel. But on hydrogenation, peptide 1 provides the saturated α,ε-hybrid peptide foldamer 2, which forms instant gel in most of the aromatic solvents. The gel exhibits high stability. The unsaturated peptide 1 has porous microsphere morphology, but saturated analogue 2 has ribbonlike morphology. The gel has been used efficiently for removal of cationic organic pollutants from waste water.
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6
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Pramanik A, Paikar A, Maji K, Haldar D. Photo-responsive modulation of hybrid peptide assembly, charge transfer complex formation and gelation. RSC Adv 2016. [DOI: 10.1039/c6ra13026g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
Light has been used as trigger for modulation of supramolecular assembly of hybrid peptides followed by charge transfer complex formation and organogelation.
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Affiliation(s)
- Apurba Pramanik
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur
- India
| | - Arpita Paikar
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur
- India
| | - Krishnendu Maji
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur
- India
| | - Debasish Haldar
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur
- India
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7
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Pramanik A, Paikar A, Haldar D. Sonication-induced instant fibrillation and fluorescent labeling of tripeptide fibers. RSC Adv 2015. [DOI: 10.1039/c5ra07864d] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A sonication-induced instant fibril formation technique has been used for the co-assembly and fluorescent labeling of peptide nanofibers with organic dyes.
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Affiliation(s)
- Apurba Pramanik
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur
- India
| | - Arpita Paikar
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur
- India
| | - Debasish Haldar
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- Mohanpur
- India
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8
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Paikar A, Pramanik A, Haldar D. Influence of side-chain interactions on the self-assembly of discotic tricarboxyamides: a crystallographic insight. RSC Adv 2015. [DOI: 10.1039/c5ra03864b] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Side chains interactions promote the self-assembly of discotic tricarboxyamides to form an entangled fiber network and thermo responsive gel.
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Affiliation(s)
- Arpita Paikar
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- India
| | - Apurba Pramanik
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- India
| | - Debasish Haldar
- Department of Chemical Sciences
- Indian Institute of Science Education and Research Kolkata
- India
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Goel R, Gopal S, Gupta A. Self-assembly of β-alanine homotetramer: formation of nanovesicles for drug delivery. J Mater Chem B 2015; 3:5849-5857. [DOI: 10.1039/c5tb00652j] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The present paper describes the fabrication of nanovesicles using the stirring induced self-assembly of a β-alanine homotetramer (H2N–βAla–βAla–βAla–βAla–CONH2) in an aqueous medium.
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Affiliation(s)
- Rahul Goel
- Department of Chemistry
- Dyal Singh College
- University of Delhi
- New Delhi 110003
- India
| | - Swarita Gopal
- Department of Chemistry
- Dyal Singh College
- University of Delhi
- New Delhi 110003
- India
| | - Alka Gupta
- Department of Chemistry
- Dyal Singh College
- University of Delhi
- New Delhi 110003
- India
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Busseron E, Ruff Y, Moulin E, Giuseppone N. Supramolecular self-assemblies as functional nanomaterials. NANOSCALE 2013; 5:7098-140. [PMID: 23832165 DOI: 10.1039/c3nr02176a] [Citation(s) in RCA: 496] [Impact Index Per Article: 45.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
In this review, we survey the diversity of structures and functions which are encountered in advanced self-assembled nanomaterials. We highlight their flourishing implementations in three active domains of applications: biomedical sciences, information technologies, and environmental sciences. Our main objective is to provide the reader with a concise and straightforward entry to this broad field by selecting the most recent and important research articles, supported by some more comprehensive reviews to introduce each topic. Overall, this compilation illustrates how, based on the rules of supramolecular chemistry, the bottom-up approach to design functional objects at the nanoscale is currently producing highly sophisticated materials oriented towards a growing number of applications with high societal impact.
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Affiliation(s)
- Eric Busseron
- SAMS Research Group, University of Strasbourg, Institut Charles Sadron, CNRS, 23 rue du Loess, BP 84087, 67034 Strasbourg Cedex 2, France
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Jastrzabek K, Bednarek P, Kolesinska B, Kaminski ZJ. Bis(4,6-dimethoxy-1,3,5-triazin-2-yl) ether as coupling reagent for peptide synthesis. Chem Biodivers 2013; 10:952-61. [PMID: 23681736 DOI: 10.1002/cbdv.201200369] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2012] [Indexed: 02/01/2023]
Abstract
Bis(4,6-dimethoxy-1,3,5-triazin-2-yl) ether (4) was prepared by treatment of 2-hydroxy-4,6-dimethoxy-1,3,5-triazine with 2-chloro-4,6-dimethoxy-1,3,5-triazine in 61% yield. Ether 4, isoelectronic with pyrocarbonates, was found capable to activate carboxylic acids in the presence of 1,4-diazabicyclo[2.2.2]octane (DABCO) to yield, under mild reaction conditions, superactive triazine esters. Versatility of this new coupling reagent was confirmed by condensation of lipophilic and sterically hindered carboxylic acids with amines in 71-98% yield, and by synthesis of peptides, including those containing Aib-Aib sequence, in solution with high yield and high enantiomeric purity.
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Affiliation(s)
- Konrad Jastrzabek
- Institute of Organic Chemistry, Technical University of Lodz, Zeromskiego 116, PL-90-924 Lodz
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Tomasini C, Castellucci N. Peptides and peptidomimetics that behave as low molecular weight gelators. Chem Soc Rev 2013; 42:156-72. [DOI: 10.1039/c2cs35284b] [Citation(s) in RCA: 235] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Maity SK, Maity S, Jana P, Haldar D. Luminescent nanoparticles from tripeptide–CdS conjugate. CrystEngComm 2012. [DOI: 10.1039/c2ce05786g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Maity SK, Maity S, Jana P, Haldar D. CdS quantum dots doped with a peptide matrix: structural and photoelectrochemical properties. CrystEngComm 2012. [DOI: 10.1039/c2ce06355g] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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