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Rhodes BJ, Schaaf LL, Zick ME, Pugh SM, Hilliard JS, Sharma S, Wade CR, Milner PJ, Csányi G, Forse AC. 17O NMR Spectroscopy Reveals CO 2 Speciation and Dynamics in Hydroxide-based Carbon Capture Materials. Chemphyschem 2024:e202400941. [PMID: 39565330 DOI: 10.1002/cphc.202400941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2024] [Revised: 11/19/2024] [Accepted: 11/19/2024] [Indexed: 11/21/2024]
Abstract
Carbon dioxide capture technologies are set to play a vital role in mitigating the current climate crisis. Solid-state 17O NMR spectroscopy can provide key mechanistic insights that are crucial to effective sorbent development. In this work, we present the fundamental aspects and complexities for the study of hydroxide-based CO2 capture systems by 17O NMR. We perform static density functional theory (DFT) NMR calculations to assign peaks for general hydroxide CO2 capture products, finding that 17O NMR can readily distinguish bicarbonate, carbonate and water species. However, in application to CO2 binding in two test case hydroxide-functionalised metal-organic frameworks (MOFs) - MFU-4l and KHCO3-cyclodextrin-MOF, we find that a dynamic treatment is necessary to obtain agreement between computational and experimental spectra. We therefore introduce a workflow that leverages machine-learning force fields to capture dynamics across multiple chemical exchange regimes, providing a significant improvement on static DFT predictions. In MFU-4l, we parameterise a two-component dynamic motion of the bicarbonate motif involving a rapid carbonyl seesaw motion and intermediate hydroxyl proton hopping. For KHCO3-CD-MOF, we combined experimental and modelling approaches to propose a new mixed carbonate-bicarbonate binding mechanism and thus, we open new avenues for the study and modelling of hydroxide-based CO2 capture materials by 17O NMR.
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Affiliation(s)
- Benjamin J Rhodes
- University of Cambridge, Yusuf Hamied Department of Chemistry, Cambridge, CB2 1EW, UK
| | - Lars L Schaaf
- University of Cambridge, Engineering Laboratory, Cambridge, CB2 1PZ, UK
| | - Mary E Zick
- Cornell University, Chemistry and Chemical Biology, Ithaca, NY 14850, USA
| | - Suzi M Pugh
- University of Cambridge, Yusuf Hamied Department of Chemistry, Cambridge, CB2 1EW, UK
| | - Jordon S Hilliard
- The Ohio State University, Department of Chemistry and Biochemistry, Columbus, OH 43210, USA
| | - Shivani Sharma
- University of Cambridge, Yusuf Hamied Department of Chemistry, Cambridge, CB2 1EW, UK
- University of California Berkeley, Department of Chemical and Biomolecular Engineering and Department of Chemistry, Berkeley, CA 94720, USA
| | - Casey R Wade
- The Ohio State University, Department of Chemistry and Biochemistry, Columbus, OH 43210, USA
| | - Phillip J Milner
- Cornell University, Chemistry and Chemical Biology, Ithaca, NY 14850, USA
| | - Gábor Csányi
- University of Cambridge, Engineering Laboratory, Cambridge, CB2 1PZ, UK
| | - Alexander C Forse
- University of Cambridge, Yusuf Hamied Department of Chemistry, Cambridge, CB2 1EW, UK
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Hartman JD, Capistran D. Predicting 51V nuclear magnetic resonance observables in molecular crystals. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2024; 62:416-428. [PMID: 38114304 DOI: 10.1002/mrc.5420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Revised: 11/26/2023] [Accepted: 11/28/2023] [Indexed: 12/21/2023]
Abstract
Solid-state nuclear magnetic resonance (NMR) spectroscopy and quantum chemical density functional theory (DFT) calculations are widely used to characterize vanadium centers in biological and pharmaceutically relevant compounds. Several techniques have been recently developed to improve the accuracy of predicted NMR parameters obtained from DFT. Fragment-based and planewave-corrected methods employing hybrid density functionals are particularly effective tools for solid-state applications. A recent benchmark study involving molecular crystal compounds found that fragment-based NMR calculations using hybrid density functionals improve the accuracy of predicted 51V chemical shieldings by 20% relative to traditional planewave methods. This work extends the previous study, including a careful analysis of 51V chemical shift anisotropy, electric field gradient calculations, and a more extensive test set. The accuracy of planewave-corrected techniques and recently developed fragment-based methods using electrostatic embedding based on the polarized continuum model (PCM) are found to be highly competitive with previous methods. Planewave-corrected methods achieve a 34% improvement in the errors of predicted 51V chemical shieldings relative to planewave. Additionally, planewave-corrected and fragment-based calculations were performed using PCM embedding, improving the accuracy of predicted 51V chemical shielding (CS) tensor principal values by 30% andC q values by 15% relative to traditional planewave methods. The performance of these methods is further examined using a redox-active oxovandium complex and a common 51V NMR reference compound.
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Affiliation(s)
- Joshua D Hartman
- Department of Chemistry, University of California, Riverside, Riverside, California, USA
| | - Daniel Capistran
- Department of Chemistry, University of California, Riverside, Riverside, California, USA
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Rahnamaye Aliabad HA, Iqbal MA, Amiri-Shookoh F, Anwar N, Bakhsh S, Arellano-Ramírez ID. Effects of the Hubbard potential on the NMR shielding and optoelectronic properties of BiMnVO 5 compound. Sci Rep 2023; 13:5816. [PMID: 37037976 PMCID: PMC10086031 DOI: 10.1038/s41598-023-33034-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 04/06/2023] [Indexed: 04/12/2023] Open
Abstract
This study explores the nuclear magnetic shielding, chemical shifts, and the optoelectronic properties of the BiMnVO5 compound using the full-potential linearized augmented plane wave method within the generalized gradient approximation by employing the Hubbard model (GGA + U). The 209Bi and 51V chemical shifts and bandgap values of the BiMnVO5 compound in a triclinic crystal structure are found to be directly related to Hubbard potential. The relationship between the isotropic nuclear magnetic shielding σiso and chemical shift δiso is obtained with a slope of 1.0231 and - 0.00188 for 209Bi and 51V atoms, respectively. It is also observed that the bandgap, isotropic nuclear magnetic shielding, and chemical shifts increase with the change in Hubbard potentials (U) of 3, 4, 5, 6, and 7.
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Affiliation(s)
| | - Muhammad Aamir Iqbal
- School of Materials Science and Engineering, Zhejiang University, Hangzhou, 310027, China.
| | - F Amiri-Shookoh
- Faculty of Physics and Nuclear Engineering, Shahrood University of Technology, P. O. Box 3619995161, Shahrood, Iran
| | - Nadia Anwar
- School of Materials Science and Engineering, Tsinghua University, Shaw Technical Science Building, Haidian District, Beijing, 100084, China
| | - Sunila Bakhsh
- Department of Physics, Balochistan University of Information Technology, Engineering and Management Sciences, Quetta, 87300, Pakistan
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Mathews A, Hartman JD. Accurate fragment-based 51-V chemical shift predictions in molecular crystals. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2021; 114:101733. [PMID: 34082261 DOI: 10.1016/j.ssnmr.2021.101733] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2021] [Revised: 04/28/2021] [Accepted: 04/28/2021] [Indexed: 06/12/2023]
Abstract
Nuclear magnetic resonance (NMR) spectroscopy plays a crucial role in determining molecular structure for complex biological and pharmaceutical compounds. NMR investigations are increasingly reliant on computation for mapping spectral features to chemical structures. Here we benchmark the accuracy of fragment-based 51V chemical shielding tensor calculations using a training set comprised of 10 biologically and pharmaceutically relevant oxovanadium complexes. Using our self-consistent reproduction of the Madelung potential (SCRMP) electrostatic embedding model, we demonstrate comparable performance between fragment methods and computationally demanding cluster-based techniques. Specifically, fragment methods employing hybrid density functionals are capable of reproducing the experimental 51V isotropic chemical shifts with a training set rms error of ~9 ppm, representing a 20% improvement over traditional plane wave techniques. We provide training set-derived linear regression models for mapping the absolute shieldings obtained from computation to the experimentally determined chemical shifts using four common density functionals; PBE0, B3LYP, PBE, and BLYP. Finally, we establish the utility of fragment methods and the reported regression parameters examining four oxovanadium structures excluded from the training set including the tetracoordinate oxovanadium silicate [Formula: see text] , VO15NGlySalbz which contains redox-active ligands, and the solid-state form of the common 51V NMR reference compound VOCl3.
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Affiliation(s)
- Amanda Mathews
- Department of Chemistry, Mt. San Jacinto College, Menifee, CA, USA
| | - Joshua D Hartman
- Department of Chemistry, Mt. San Jacinto College, Menifee, CA, USA.
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Jeantelot G, Ould-Chikh S, Sofack-Kreutzer J, Abou-Hamad E, Anjum DH, Lopatin S, Harb M, Cavallo L, Basset JM. Morphology control of anatase TiO2 for well-defined surface chemistry. Phys Chem Chem Phys 2018; 20:14362-14373. [DOI: 10.1039/c8cp01983e] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Surface hydroxyls of titanium dioxide (anatase) are studied by infrared spectroscopy, density functional theory and nuclear magnetic resonance. They are found to be dependent on morphology and fluoride content.
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Affiliation(s)
- Gabriel Jeantelot
- Kaust Catalysis Center (KCC)
- Physical Science and Engineering Division (PSE)
- King Abdullah University of Science and Technology (KAUST)
- Thuwal 23955-6900
- Saudi Arabia
| | - Samy Ould-Chikh
- Kaust Catalysis Center (KCC)
- Physical Science and Engineering Division (PSE)
- King Abdullah University of Science and Technology (KAUST)
- Thuwal 23955-6900
- Saudi Arabia
| | - Julien Sofack-Kreutzer
- Kaust Catalysis Center (KCC)
- Physical Science and Engineering Division (PSE)
- King Abdullah University of Science and Technology (KAUST)
- Thuwal 23955-6900
- Saudi Arabia
| | - Edy Abou-Hamad
- Kaust Catalysis Center (KCC)
- Physical Science and Engineering Division (PSE)
- King Abdullah University of Science and Technology (KAUST)
- Thuwal 23955-6900
- Saudi Arabia
| | - Dalaver H. Anjum
- Imaging and Characterization Lab
- King Abdullah University of Science and Technology
- Thuwal 23955-6900
- Saudi Arabia
| | - Sergei Lopatin
- Imaging and Characterization Lab
- King Abdullah University of Science and Technology
- Thuwal 23955-6900
- Saudi Arabia
| | - Moussab Harb
- Kaust Catalysis Center (KCC)
- Physical Science and Engineering Division (PSE)
- King Abdullah University of Science and Technology (KAUST)
- Thuwal 23955-6900
- Saudi Arabia
| | - Luigi Cavallo
- Kaust Catalysis Center (KCC)
- Physical Science and Engineering Division (PSE)
- King Abdullah University of Science and Technology (KAUST)
- Thuwal 23955-6900
- Saudi Arabia
| | - Jean-Marie Basset
- Kaust Catalysis Center (KCC)
- Physical Science and Engineering Division (PSE)
- King Abdullah University of Science and Technology (KAUST)
- Thuwal 23955-6900
- Saudi Arabia
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Özcan N, Mareš J, Sundholm D, Vaara J. Solvation chemical shifts of perylenic antenna molecules from molecular dynamics simulations. Phys Chem Chem Phys 2014; 16:22309-20. [PMID: 25222796 DOI: 10.1039/c4cp02894e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Solvation-induced shifts in molecular properties can be realistically simulated by employing a dynamic model with explicit solvent molecules. In this work, (13)C NMR chemical shifts of various candidate antenna molecules for dye-sensitised solar cells have been studied by using density-functional theory calculations both in vacuo and by employing a dynamic solvation model. The solvent effects were investigated using instantaneous molecular dynamics snapshots containing the antenna molecule and surrounding acetonitrile solvent molecules. Such calculations take into account the main mechanisms of solvation-induced chemical shifts. We have analysed the contributions to the solvent shift due to the solvent susceptibility anisotropy, changes in the density of the virtual orbital space and the accessibility of the excited states to the pronouncedly local magnetic hyperfine operator. We present Lorentzian-broadened chemical shift stick spectra in which a comparison of the in vacuo and dynamic-solvation model results is graphically illustrated. The results show that the solvent-accessible atoms at the perimeter of the solute are influenced by the virtual states of the solvent molecules, which are visible to the hyperfine operators of the perimeter nuclei. This enables efficient coupling of the ground state of the solute to the magnetically allowed excited states, resulting in a positive chemical shift contribution of the perimeter nuclei. As a result of solvation, the chemical shift signals of perimeter nuclei are found to be displaced towards larger chemical shift values, whereas the nuclei of the inner region of the solute molecules show the opposite trend. The solvent susceptibility anisotropy is found to cause a small and practically constant contribution.
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Affiliation(s)
- Nergiz Özcan
- Department of Chemistry, FIN-00014 University of Helsinki, P.O. Box 50, Finland.
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Schmidt TC, Paasche A, Grebner C, Ansorg K, Becker J, Lee W, Engels B. QM/MM investigations of organic chemistry oriented questions. Top Curr Chem (Cham) 2014; 351:25-101. [PMID: 22392477 DOI: 10.1007/128_2011_309] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
About 35 years after its first suggestion, QM/MM became the standard theoretical approach to investigate enzymatic structures and processes. The success is due to the ability of QM/MM to provide an accurate atomistic picture of enzymes and related processes. This picture can even be turned into a movie if nuclei-dynamics is taken into account to describe enzymatic processes. In the field of organic chemistry, QM/MM methods are used to a much lesser extent although almost all relevant processes happen in condensed matter or are influenced by complicated interactions between substrate and catalyst. There is less importance for theoretical organic chemistry since the influence of nonpolar solvents is rather weak and the effect of polar solvents can often be accurately described by continuum approaches. Catalytic processes (homogeneous and heterogeneous) can often be reduced to truncated model systems, which are so small that pure quantum-mechanical approaches can be employed. However, since QM/MM becomes more and more efficient due to the success in software and hardware developments, it is more and more used in theoretical organic chemistry to study effects which result from the molecular nature of the environment. It is shown by many examples discussed in this review that the influence can be tremendous, even for nonpolar reactions. The importance of environmental effects in theoretical spectroscopy was already known. Due to its benefits, QM/MM can be expected to experience ongoing growth for the next decade.In the present chapter we give an overview of QM/MM developments and their importance in theoretical organic chemistry, and review applications which give impressions of the possibilities and the importance of the relevant effects. Since there is already a bunch of excellent reviews dealing with QM/MM, we will discuss fundamental ingredients and developments of QM/MM very briefly with a focus on very recent progress. For the applications we follow a similar strategy.
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Affiliation(s)
- Thomas C Schmidt
- Institut für Phys. und Theor. Chemie, Emil-Fischer-Strasse 42, Campus Hubland Nord, 97074, Würzburg, Germany
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Dračínský M, Hodgkinson P. A molecular dynamics study of the effects of fast molecular motions on solid-state NMR parameters. CrystEngComm 2013. [DOI: 10.1039/c3ce40612a] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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Bonhomme C, Gervais C, Babonneau F, Coelho C, Pourpoint F, Azaïs T, Ashbrook SE, Griffin JM, Yates JR, Mauri F, Pickard CJ. First-principles calculation of NMR parameters using the gauge including projector augmented wave method: a chemist's point of view. Chem Rev 2012; 112:5733-79. [PMID: 23113537 DOI: 10.1021/cr300108a] [Citation(s) in RCA: 326] [Impact Index Per Article: 25.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Christian Bonhomme
- Laboratoire de Chimie de la Matière Condensée de Paris, Université Pierre et Marie Curie, CNRS UMR, Collège de France, France.
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Amado AM, Fiuza SM, Batista de Carvalho LAE, Ribeiro-Claro PJA. On the Effects of Changing Gaussian Program Version and SCRF Defining Parameters: Isopropylamine as a Case Study. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2012. [DOI: 10.1246/bcsj.20120016] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Ana M. Amado
- Química-Física Molecular, Departamento de Química, FCTUC, Universidade de Coimbra
| | - Sónia M. Fiuza
- Química-Física Molecular, Departamento de Química, FCTUC, Universidade de Coimbra
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Bjornsson R, Bühl M. Modeling Molecular Crystals by QM/MM: Self-Consistent Electrostatic Embedding for Geometry Optimizations and Molecular Property Calculations in the Solid. J Chem Theory Comput 2012; 8:498-508. [DOI: 10.1021/ct200824r] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Ragnar Bjornsson
- School of Chemistry, North Haugh, University of St. Andrews, St. Andrews, Fife, UK KY16 9ST, United Kingdom
| | - Michael Bühl
- School of Chemistry, North Haugh, University of St. Andrews, St. Andrews, Fife, UK KY16 9ST, United Kingdom
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Bühl M, van Mourik T. NMR spectroscopy: quantum-chemical calculations. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2011. [DOI: 10.1002/wcms.63] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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