1
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The interaction of steroids with phospholipid bilayers and membranes. Biophys Rev 2021; 14:163-179. [DOI: 10.1007/s12551-021-00918-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Accepted: 11/18/2021] [Indexed: 12/13/2022] Open
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2
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Morales-Amador A, Molina-Miras A, López-Rosales L, Sánchez-Mirón A, García-Camacho F, Souto ML, Fernández JJ. Isolation and Structural Elucidation of New Amphidinol Analogues from Amphidinium carterae Cultivated in a Pilot-Scale Photobioreactor. Mar Drugs 2021; 19:432. [PMID: 34436271 PMCID: PMC8399002 DOI: 10.3390/md19080432] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 07/19/2021] [Accepted: 07/26/2021] [Indexed: 12/12/2022] Open
Abstract
The demand for valuable products from dinoflagellate biotechnology has increased remarkably in recent years due to their many prospective applications. However, there remain many challenges that need to be addressed in order to make dinoflagellate bioactives a commercial reality. In this article, we describe the technical feasibility of producing and recovering amphidinol analogues (AMs) excreted into a culture broth of Amphidinium carterae ACRN03, successfully cultured in an LED-illuminated pilot-scale (80 L) bubble column photobioreactor operated in fed-batch mode with a pulse feeding strategy. We report on the isolation of new structurally related AMs, amphidinol 24 (1, AM24), amphidinol 25 (2, AM25) and amphidinol 26 (3, AM26), from a singular fraction resulting from the downstream processing. Their planar structures were elucidated by extensive NMR and HRMS analysis, whereas the relative configuration of the C-32→C-47 bis-tetrahydropyran core was confirmed to be antipodal in accord with the recently revised configuration of AM3. The hemolytic activities of the new metabolites and other related derivatives were evaluated, and structure-activity conclusions were established. Their isolation was based on a straightforward and high-performance bioprocess that could be suitable for the commercial development of AMs or other high-value compounds from shear sensitive dinoflagellates.
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Affiliation(s)
- Adrián Morales-Amador
- Instituto Universitario de Bio-Orgánica Antonio González (IUBO AG), Universidad de La Laguna (ULL), Avda. Astrofísico F. Sánchez 2, 38206 La Laguna, Spain;
- Departamento de Química Orgánica, Universidad de La Laguna (ULL), Avda. Astrofísico F. Sánchez 2, 38206 La Laguna, Spain
| | - Alejandro Molina-Miras
- Chemical Engineering Department, University of Almería, 04120 Almería, Spain; (A.M.-M.); (L.L.-R.); (A.S.-M.); (F.G.-C.)
- Research Center CIAIMBITAL, University of Almería, 04120 Almería, Spain
| | - Lorenzo López-Rosales
- Chemical Engineering Department, University of Almería, 04120 Almería, Spain; (A.M.-M.); (L.L.-R.); (A.S.-M.); (F.G.-C.)
- Research Center CIAIMBITAL, University of Almería, 04120 Almería, Spain
| | - Asterio Sánchez-Mirón
- Chemical Engineering Department, University of Almería, 04120 Almería, Spain; (A.M.-M.); (L.L.-R.); (A.S.-M.); (F.G.-C.)
- Research Center CIAIMBITAL, University of Almería, 04120 Almería, Spain
| | - Francisco García-Camacho
- Chemical Engineering Department, University of Almería, 04120 Almería, Spain; (A.M.-M.); (L.L.-R.); (A.S.-M.); (F.G.-C.)
- Research Center CIAIMBITAL, University of Almería, 04120 Almería, Spain
| | - María L. Souto
- Instituto Universitario de Bio-Orgánica Antonio González (IUBO AG), Universidad de La Laguna (ULL), Avda. Astrofísico F. Sánchez 2, 38206 La Laguna, Spain;
- Departamento de Química Orgánica, Universidad de La Laguna (ULL), Avda. Astrofísico F. Sánchez 2, 38206 La Laguna, Spain
| | - José J. Fernández
- Instituto Universitario de Bio-Orgánica Antonio González (IUBO AG), Universidad de La Laguna (ULL), Avda. Astrofísico F. Sánchez 2, 38206 La Laguna, Spain;
- Departamento de Química Orgánica, Universidad de La Laguna (ULL), Avda. Astrofísico F. Sánchez 2, 38206 La Laguna, Spain
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3
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Martinotti C, Ruiz-Perez L, Deplazes E, Mancera RL. Molecular Dynamics Simulation of Small Molecules Interacting with Biological Membranes. Chemphyschem 2020; 21:1486-1514. [PMID: 32452115 DOI: 10.1002/cphc.202000219] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 05/22/2020] [Indexed: 12/12/2022]
Abstract
Cell membranes protect and compartmentalise cells and their organelles. The semi-permeable nature of these membranes controls the exchange of solutes across their structure. Characterising the interaction of small molecules with biological membranes is critical to understanding of physiological processes, drug action and permeation, and many biotechnological applications. This review provides an overview of how molecular simulations are used to study the interaction of small molecules with biological membranes, with a particular focus on the interactions of water, organic compounds, drugs and short peptides with models of plasma cell membrane and stratum corneum lipid bilayers. This review will not delve on other types of membranes which might have different composition and arrangement, such as thylakoid or mitochondrial membranes. The application of unbiased molecular dynamics simulations and enhanced sampling methods such as umbrella sampling, metadynamics and replica exchange are described using key examples. This review demonstrates how state-of-the-art molecular simulations have been used successfully to describe the mechanism of binding and permeation of small molecules with biological membranes, as well as associated changes to the structure and dynamics of these membranes. The review concludes with an outlook on future directions in this field.
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Affiliation(s)
- Carlo Martinotti
- School of Pharmacy and Biomedical Sciences, Curtin Health Innovation Research Institute and, Curtin Institute for Computation, Curtin University, Perth, WA 6845, Australia
| | - Lanie Ruiz-Perez
- School of Pharmacy and Biomedical Sciences, Curtin Health Innovation Research Institute and, Curtin Institute for Computation, Curtin University, Perth, WA 6845, Australia
| | - Evelyne Deplazes
- School of Life Sciences, University of Technology Sydney, Sydney, NSW 2007, Australia
| | - Ricardo L Mancera
- School of Pharmacy and Biomedical Sciences, Curtin Health Innovation Research Institute and, Curtin Institute for Computation, Curtin University, Perth, WA 6845, Australia
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4
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Ribić R, Manček-Keber M, Chain F, Sinnaeve D, Martins JC, Jerala R, Tomić S, Fehér K. Targeted Delivery of Adamantylated Peptidoglycan Immunomodulators in Lipid Nanocarriers: NMR Shows That Cargo Fragments Are Available on the Surface. J Phys Chem B 2020; 124:4132-4145. [PMID: 32283934 DOI: 10.1021/acs.jpcb.0c00029] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
We present an in-depth investigation of the membrane interactions of peptidoglycan (PGN)-based immune adjuvants designed for lipid-based delivery systems using NMR spectroscopy. The derivatives contain a cargo peptidoglycan (PGN) dipeptide fragment and an adamantyl group, which serves as an anchor to the lipid bilayer. Furthermore, derivatives with a mannose group that can actively target cell surface receptors on immune cells are also studied. We showed that the targeting mannose group and the cargo PGN fragment are both available on the lipid bilayer surface, thereby enabling interactions with cognate receptors. We found that the nonmannosylated compounds are incorporated stronger into the lipid assemblies than the mannosylated ones, but the latter compounds penetrate deeper in the bilayer. This might be explained by stronger electrostatic interactions available for zwitterionic nonmannosylated derivatives as opposed to the compounds in which the charged N-terminus is capped by mannose groups. The higher incorporation efficiency of the nonmannosylated compounds correlated with a larger relative enhancement in immune stimulation activities upon lipid incorporation compared to that of the derivatives with the mannose group. The chirality of the adamantyl group also influenced the incorporation efficiency, which in turn correlated with membrane-associated conformations that affect possible intermolecular interactions with lipid molecules. These findings will help in improving the development of PGN-based immune adjuvants suitable for delivery in lipid nanoparticles.
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Affiliation(s)
- Rosana Ribić
- University Center Varaždin, University North, Jurja Križanića 31b, HR-42 000 Varaždin, Croatia.,Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany
| | - Mateja Manček-Keber
- Department of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, P.O. Box 660, SI-1001 Ljubljana, Slovenia.,Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany
| | - Fernando Chain
- Department of Organic and Macromolecular Chemistry, Ghent University, Campus Sterre S4, Krijgslaan 281, 9000 Ghent, Belgium
| | - Davy Sinnaeve
- Department of Organic and Macromolecular Chemistry, Ghent University, Campus Sterre S4, Krijgslaan 281, 9000 Ghent, Belgium.,Univ. Lille, Inserm, Institut Pasteur de Lille, CHU Lille, U1167 - Labex DISTALZ - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000 Lille, France.,CNRS, ERL9002 - Integrative Structural Biology, F-59000 Lille, France
| | - José C Martins
- Department of Organic and Macromolecular Chemistry, Ghent University, Campus Sterre S4, Krijgslaan 281, 9000 Ghent, Belgium
| | - Roman Jerala
- Department of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, P.O. Box 660, SI-1001 Ljubljana, Slovenia
| | - Srđanka Tomić
- Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102A, HR-10 000 Zagreb, Croatia
| | - Krisztina Fehér
- Department of Organic and Macromolecular Chemistry, Ghent University, Campus Sterre S4, Krijgslaan 281, 9000 Ghent, Belgium.,Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany.,Molecular Recognition and Interaction Research Group, Hungarian Academy of Sciences, Egyetem tér 1, H-4032 Debrecen, Hungary
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5
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Theonellamide A, a marine-sponge-derived bicyclic peptide, binds to cholesterol in aqueous DMSO: Solution NMR-based analysis of peptide-sterol interactions using hydroxylated sterol. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2019; 1861:228-235. [DOI: 10.1016/j.bbamem.2018.07.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Revised: 07/06/2018] [Accepted: 07/23/2018] [Indexed: 11/21/2022]
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6
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Altering the edge chemistry of bicelles with peptoids. Chem Phys Lipids 2018; 217:43-50. [PMID: 30391486 DOI: 10.1016/j.chemphyslip.2018.10.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 09/10/2018] [Accepted: 10/23/2018] [Indexed: 01/23/2023]
Abstract
Cell function is tied to the interactions that occur within and across the cell membrane. Therefore, understanding membrane-affiliated interactions is important to many biomedical applications. Advancing the body of knowledge about these interactions will lead to discoveries in biomarker detection and therapeutic targets for disease detection and treatment. Model membrane systems are an effective way to study membrane proteins for such discoveries, allowing for stable protein structure and maintaining native activity. Bicelles, disc-shaped lipid bilayers created by combining long- and short-chain phospholipids, are the model membrane system of focus in this study. Bicelles are accessible from both sides and have a wide size range, which makes them attractive for studying membrane interactions without affecting function. In this work, bicelles were functionalized with peptoids to alter the edge chemistry. Peptoids are suitable for this application because of the large diversity of available side chain chemistries that can be easily incorporated in a sequence-specific manner. The peptoid sequence consists of three functional regions to promote insertion into the edge of bicelles. The insertion sequence at the C-terminus contains two alkyl chains and two hydrophobic, chiral aromatic groups that anchor into the bicelle edge. The facially amphipathic helix contains chiral aromatic groups on one side that interact with the lipid tails and positively charged groups on the other side, which interact with the lipid head groups. Thiol groups are included at the N-terminus to allow for visualization of peptoid location in the bicelle. Bicelle morphology and size were assessed by transmission electron microscopy (TEM) and dynamic light scattering (DLS). Peptoid location in the bicelle was determined by attachment of gold nanoparticles, which confirmed preferential incorporation of the peptoid into the bicelle edge with 82% specificity. Additionally, the peptoid-functionalized bicelles are of similar size and morphology to non-functionalized bicelles. Results from this study show that peptoid-functionalized bicelles are a promising model membrane system with potential applications in biosensors or bioseparations.
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7
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Kornmueller K, Lehofer B, Leitinger G, Amenitsch H, Prassl R. Peptide self-assembly into lamellar phases and the formation of lipid-peptide nanostructures. NANO RESEARCH 2018; 11:913-928. [PMID: 29372005 PMCID: PMC5777605 DOI: 10.1007/s12274-017-1702-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Lipids exhibit an extraordinary polymorphism in self-assembled mesophases, with lamellar phases as biologically most relevant representative. To mimic lipid lamellar phases with amphiphilic designer peptides, seven systematically varied short peptides were engineered. Indeed, four peptide candidates (V4D, V4WD, V4WD2, I4WD2) readily self-assembled into lamellae in aqueous solution: small-angle X-ray scattering patterns (SAXS) revealed ordered lamellar structures with a repeat distance of ~4-5 nm. Transmission electron microscopy (TEM) images confirmed the presence of stacked sheets. Two derivatives (V3D and V4D2) remained as loose aggregates dispersed in solution; one peptide (L4WD2) formed twisted tapes with internal lamellae and an antiparallel β-type monomer alignment. To understand the interaction of peptides with lipids they were mixed with phosphatidylcholines. Low peptide concentrations (1.1 mM) induced the formation of a heterogeneous mixture of vesicular structures: large multilamellar vesicles (d-spacing ~6.3 nm) coexisted with oligo- or unilamellar vesicles (~50 nm in diameter) and bicelle-like structures (~45 nm length, ~18 nm width). High peptide concentrations (11 mM) led to unilamellar vesicles (ULV, diameter ~260-280 nm) with a homogeneous mixing of lipids and peptides. SAXS revealed the temperature-dependent fine structure of these ULVs: at 25 °C the bilayer is in a fully interdigitated state (headgroup-to-headgroup distance dhh ~2.9 nm), whereas at 50 °C this interdigitation opens up (dhh ~3.6 nm). Our results highlight the versatility of self-assembled peptide superstructures: subtle changes in the amino acid composition are key design elements in creating peptide- or lipid-peptide nanostructures with the same richness in morphology as known from the lipid-world.
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Affiliation(s)
- Karin Kornmueller
- Institute of Biophysics, Medical University of Graz,
BioTechMed-Graz, Graz 8010, Austria
| | - Bernhard Lehofer
- Institute of Biophysics, Medical University of Graz,
BioTechMed-Graz, Graz 8010, Austria
| | - Gerd Leitinger
- Institute of Cell Biology, Histology and Embryology, Research Unit
Electron Microscopic Techniques, Medical University of Graz, Graz 8010,
Austria
| | - Heinz Amenitsch
- Institute of Inorganic Chemistry, Graz University of Technology,
Graz 8010, Austria
| | - Ruth Prassl
- Institute of Biophysics, Medical University of Graz,
BioTechMed-Graz, Graz 8010, Austria
- Address correspondence to Ruth Prassl,
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8
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Affiliation(s)
- M. J. Greenall
- Institute of Mathematics,
Physics and Computer Science, Physical Sciences Building, Aberystwyth University, Aberystwyth SY23 3BZ, United Kingdom
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9
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Waters AL, Oh J, Place AR, Hamann MT. Stereochemical Studies of the Karlotoxin Class Using NMR Spectroscopy and DP4 Chemical‐Shift Analysis: Insights into their Mechanism of Action. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201507418] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Amanda L. Waters
- Department of Pharmacognosy, Pharmacology, School of Pharmacy, and Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677 (USA)
| | - Joonseok Oh
- Department of Pharmacognosy, Pharmacology, School of Pharmacy, and Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677 (USA)
| | - Allen R. Place
- Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Sciences, Suite 236 Columbus Center, Baltimore, MD 21202 (USA)
| | - Mark T. Hamann
- Department of Pharmacognosy, Pharmacology, School of Pharmacy, and Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677 (USA)
- Department of Drug Discovery and Biomedical Sciences, Medical University of South Carolina, Charleston, SC 29425 (USA)
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10
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Waters AL, Oh J, Place AR, Hamann MT. Stereochemical Studies of the Karlotoxin Class Using NMR Spectroscopy and DP4 Chemical-Shift Analysis: Insights into their Mechanism of Action. Angew Chem Int Ed Engl 2015; 54:15705-10. [PMID: 26568046 DOI: 10.1002/anie.201507418] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2015] [Revised: 09/22/2015] [Indexed: 12/13/2022]
Abstract
After publication of karlotoxin 2 (KmTx2; 1), the harmful algal bloom dinoflagellate Karlodinium sp. was collected and scrutinized to identify additional biologically active complex polyketides. The structure of 1 was validated and revised at C49 using computational NMR tools including J-based configurational analysis and chemical-shift calculations. The characterization of two new compounds [KmTx8 (2) and KmTx9 (3)] was achieved through overlaid 2D HSQC NMR techniques, while the relative configurations were determined by comparison to 1 and computational chemical-shift calculations. The detailed evaluation of 2 using the NCI-60 cell lines, NMR binding studies, and an assessment of the literature supports a mode of action (MoA) for targeting cancer-cell membranes, especially of cytostatic tumors. This MoA is uniquely different from that of current agents employed in the control of cancers for which 2 shows sensitivity.
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Affiliation(s)
- Amanda L Waters
- Department of Pharmacognosy, Pharmacology, School of Pharmacy, and Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677 (USA)
| | - Joonseok Oh
- Department of Pharmacognosy, Pharmacology, School of Pharmacy, and Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677 (USA)
| | - Allen R Place
- Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Sciences, Suite 236 Columbus Center, Baltimore, MD 21202 (USA)
| | - Mark T Hamann
- Department of Pharmacognosy, Pharmacology, School of Pharmacy, and Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677 (USA). , .,Department of Drug Discovery and Biomedical Sciences, Medical University of South Carolina, Charleston, SC 29425 (USA). ,
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11
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Murata M, Sugiyama S, Matsuoka S, Matsumori N. Bioactive Structure of Membrane Lipids and Natural Products Elucidated by a Chemistry-Based Approach. CHEM REC 2015; 15:675-90. [DOI: 10.1002/tcr.201402097] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Indexed: 12/13/2022]
Affiliation(s)
- Michio Murata
- JST ERATO; Lipid Active Structure Project; Machikaneyama, Toyonaka Osaka 560-0043 Japan
- Department of Chemistry, Graduate School of Science; Osaka University; Machikaneyama, Toyonaka Osaka 563-0043 Japan
| | - Shigeru Sugiyama
- JST ERATO; Lipid Active Structure Project; Machikaneyama, Toyonaka Osaka 560-0043 Japan
- Department of Chemistry, Graduate School of Science; Osaka University; Machikaneyama, Toyonaka Osaka 563-0043 Japan
| | - Shigeru Matsuoka
- JST ERATO; Lipid Active Structure Project; Machikaneyama, Toyonaka Osaka 560-0043 Japan
- Department of Chemistry, Graduate School of Science; Osaka University; Machikaneyama, Toyonaka Osaka 563-0043 Japan
| | - Nobuaki Matsumori
- Department of Chemistry, Graduate School of Science; Osaka University; Machikaneyama, Toyonaka Osaka 563-0043 Japan
- Department of Chemistry, Faculty and Graduate School of Sciences; Kyushu University; 744 Motooka, Nishi-ku Fukuoka 819-0395 Japan
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12
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Deeds JR, Hoesch RE, Place AR, Kao JPY. The cytotoxic mechanism of karlotoxin 2 (KmTx 2) from Karlodinium veneficum (Dinophyceae). AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2015; 159:148-55. [PMID: 25546005 PMCID: PMC4343303 DOI: 10.1016/j.aquatox.2014.11.028] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2014] [Revised: 11/26/2014] [Accepted: 11/29/2014] [Indexed: 05/09/2023]
Abstract
This study demonstrates that the polyketide toxin karlotoxin 2 (KmTx 2) produced by Karlodinium veneficum, a dinoflagellate associated with fish kills in temperate estuaries world-wide, alters vertebrate cell membrane permeability. Microfluorimetric and electrophysiological measurements were used to determine that vertebrate cellular toxicity occurs through non-selective permeabilization of plasma membranes, leading to osmotic cell lysis. Previous studies showed that KmTx 2 is lethal to fish at naturally-occurring concentrations measured during fish kills, while sub-lethal doses severely damage gill epithelia. This study provides a mechanistic explanation for the association between K. veneficum blooms and fish kills that has long been observed in temperate estuaries worldwide.
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Affiliation(s)
- Jonathan R Deeds
- University of Maryland Center for Environmental Science, Institute of Marine and Environmental Technology, 701 East Pratt Street, Suite 236, Baltimore, MD 21202, USA.
| | - Robert E Hoesch
- University of Maryland, Baltimore, Center for Biomedical Engineering and Technology and Department of Physiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA
| | - Allen R Place
- University of Maryland Center for Environmental Science, Institute of Marine and Environmental Technology, 701 East Pratt Street, Suite 236, Baltimore, MD 21202, USA.
| | - Joseph P Y Kao
- University of Maryland, Baltimore, Center for Biomedical Engineering and Technology and Department of Physiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA
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13
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Matsumori N. Structure and Interaction in Lipid Bilayers Analyzed Using Bicelles. J SYN ORG CHEM JPN 2014. [DOI: 10.5059/yukigoseikyokaishi.72.596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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14
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Dürr UH, Soong R, Ramamoorthy A. When detergent meets bilayer: birth and coming of age of lipid bicelles. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2013; 69:1-22. [PMID: 23465641 PMCID: PMC3741677 DOI: 10.1016/j.pnmrs.2013.01.001] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2012] [Accepted: 08/30/2012] [Indexed: 05/12/2023]
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15
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Abstract
Antimicrobial peptides (AMPs) provide a primordial source of immunity, conferring upon eukaryotic cells resistance against bacteria, protozoa, and viruses. Despite a few examples of anionic peptides, AMPs are usually relatively short positively charged polypeptides, consisting of a dozen to about a hundred amino acids, and exhibiting amphipathic character. Despite significant differences in their primary and secondary structures, all AMPs discovered to date share the ability to interact with cellular membranes, thereby affecting bilayer stability, disrupting membrane organization, and/or forming well-defined pores. AMPs selectively target infectious agents without being susceptible to any of the common pathways by which these acquire resistance, thereby making AMPs prime candidates to provide therapeutic alternatives to conventional drugs. However, the mechanisms of AMP actions are still a matter of intense debate. The structure-function paradigm suggests that a better understanding of how AMPs elicit their biological functions could result from atomic resolution studies of peptide-lipid interactions. In contrast, more strict thermodynamic views preclude any roles for three-dimensional structures. Indeed, the design of selective AMPs based solely on structural parameters has been challenging. In this chapter, we will focus on selected AMPs for which studies on the corresponding AMP-lipid interactions have helped reach an understanding of how AMP effects are mediated. We will emphasize the roles of both liquid- and solid-state NMR spectroscopy for elucidating the mechanisms of action of AMPs.
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16
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Yamaguchi T, Uno T, Uekusa Y, Yagi-Utsumi M, Kato K. Ganglioside-embedding small bicelles for probing membrane-landing processes of intrinsically disordered proteins. Chem Commun (Camb) 2013; 49:1235-7. [DOI: 10.1039/c2cc38016a] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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17
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Haferkamp I, Linka N. Functional expression and characterisation of membrane transport proteins. PLANT BIOLOGY (STUTTGART, GERMANY) 2012; 14:675-90. [PMID: 22639981 DOI: 10.1111/j.1438-8677.2012.00591.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Membrane transporters set the framework organising the complexity of plant metabolism in cells, tissues and organisms. Their substrate specificity and controlled activity in different cells is a crucial part for plant metabolism to run pathways in concert. Transport proteins catalyse the uptake and exchange of ions, substrates, intermediates, products and cofactors across membranes. Given the large number of metabolites, a wide spectrum of transporters is required. The vast majority of in silico annotated membrane transporters in plant genomes, however, has not yet been functionally characterised. Hence, to understand the metabolic network as a whole, it is important to understand how transporters connect and control the metabolic pathways of plant cells. Heterologous expression and in vitro activity studies of recombinant transport proteins have highly improved their functional analysis in the last two decades. This review provides a comprehensive overview of the recent advances in membrane protein expression and functional characterisation using various host systems and transport assays.
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Affiliation(s)
- I Haferkamp
- Plant Physiology, Technical University of Kaiserslautern, Kaiserslautern, Germany Plant Biochemistry, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - N Linka
- Plant Physiology, Technical University of Kaiserslautern, Kaiserslautern, Germany Plant Biochemistry, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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18
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Scholtysek P, Achilles A, Hoffmann CV, Lechner BD, Meister A, Tschierske C, Saalwächter K, Edwards K, Blume A. A T-Shaped Amphiphilic Molecule Forms Closed Vesicles in Water and Bicelles in Mixtures with a Membrane Lipid. J Phys Chem B 2012; 116:4871-8. [DOI: 10.1021/jp207996r] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Peggy Scholtysek
- Institute of Chemistry - Physical
Chemistry, Martin-Luther-University Halle-Wittenberg, D-06120, Halle/Saale, Germany
| | - Anja Achilles
- Institute of Physics - NMR, Martin-Luther-University Halle-Wittenberg, D-06120,
Halle/Saale, Germany
| | - Claudia-Viktoria Hoffmann
- Institute of Chemistry - Physical
Chemistry, Martin-Luther-University Halle-Wittenberg, D-06120, Halle/Saale, Germany
| | - Bob-Dan Lechner
- Institute of Chemistry - Physical
Chemistry, Martin-Luther-University Halle-Wittenberg, D-06120, Halle/Saale, Germany
| | - Annette Meister
- ZIK
HALOmem, Martin-Luther-University Halle-Wittenberg, D-06120, Halle/Saale, Germany
| | - Carsten Tschierske
- Institute of Chemistry - Organic
Chemistry, Martin-Luther-University Halle-Wittenberg, D-06120, Halle/Saale, Germany
| | - Kay Saalwächter
- Institute of Physics - NMR, Martin-Luther-University Halle-Wittenberg, D-06120,
Halle/Saale, Germany
| | - Katarina Edwards
- Institute for Physical and Analytical
Chemistry, Uppsala University, 75123 Uppsala,
Sweden
| | - Alfred Blume
- Institute of Chemistry - Physical
Chemistry, Martin-Luther-University Halle-Wittenberg, D-06120, Halle/Saale, Germany
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19
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Agah S, Faham S. Crystallization of membrane proteins in bicelles. METHODS IN MOLECULAR BIOLOGY (CLIFTON, N.J.) 2012; 914:3-16. [PMID: 22976019 DOI: 10.1007/978-1-62703-023-6_1] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The structural biology of membrane proteins remains a challenging field, partly due to the difficulty in obtaining high-quality crystals. We developed the bicelle method as a tool to aid with the production of membrane protein crystals. Bicelles are bilayer discs that are formed by a mixture of a detergent and a lipid. They combine the ease of use of detergents with the benefits of a lipidic medium. Bicelles maintain membrane proteins in a bilayer milieu, which is more similar to their native environment than detergent micelles. At the same time, bicelles are liquid at certain temperatures and they can be integrated into standard crystallization techniques without the need for specialized equipment.
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Affiliation(s)
- Sayeh Agah
- Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA
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20
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NMR-based conformational analysis of sphingomyelin in bicelles. Bioorg Med Chem 2011; 20:270-8. [PMID: 22133901 DOI: 10.1016/j.bmc.2011.11.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2011] [Revised: 10/31/2011] [Accepted: 11/01/2011] [Indexed: 11/21/2022]
Abstract
Sphingomyelin (SM) is a common sphingolipid in mammalian membranes and is known to be substantially involved in cellular events such as the formation of lipid rafts. Despite its biological significance, conformation of SM in a membrane environment remains unclear because the noncrystalline property and anisotropic environment of lipid bilayers hampers the application of X-ray crystallography and NMR measurements. In this study, to elucidate the conformation of SM in membranes, we utilized bicelles as a substitute for a lipid bilayer membrane. First, we demonstrated through (31)P NMR, (2)H NMR, and dynamic light scattering experiments that SM forms both oriented and isotropic bicelles by changing the ratio of SM/dihexanoyl phosphatidylcholine. Then, we determined the conformation of SM in isotropic bicelles on the basis of coupling constants and NOE correlations in (1)H NMR and found that the C2-C6 and amide groups of SM take a relatively rigid conformation in bicelles.
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21
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Ivanova J, Pantcheva IN, Mitewa M, Simova S, Tanabe M, Osakada K. Cd(II) and Pb(II) complexes of the polyether ionophorous antibiotic salinomycin. Chem Cent J 2011; 5:52. [PMID: 21906282 PMCID: PMC3184049 DOI: 10.1186/1752-153x-5-52] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Accepted: 09/09/2011] [Indexed: 12/13/2022] Open
Abstract
Background The natural polyether ionophorous antibiotics are used for the treatment of coccidiosis in poultry and ruminants. They are effective agents against infections caused by Gram-positive microorganisms. On the other hand, it was found that some of these compounds selectively bind lead(II) ions in in vivo experiments, despite so far no Pb(II)-containing compounds of defined composition have been isolated and characterized. To assess the potential of polyether ionophores as possible antidotes in the agriculture, a detailed study on their in vitro complexation with toxic metal ions is required. In the present paper we report for the first time the preparation and the structure elucidation of salinomycin complexes with ions of cadmium(II) and lead(II). Results New metal(II) complexes of the polyether ionophorous antibiotic salinomycin with Cd(II) and Pb(II) ions were prepared and structurally characterized by IR, FAB-MS and NMR techniques. The spectroscopic information and elemental analysis data reveal that sodium salinomycin (SalNa) undergoes a reaction with heavy metal(II) ions to form [Cd(Sal)2(H2O)2] (1) and [Pb(Sal)(NO3)] (2), respectively. Abstraction of sodium ions from the cavity of the antibiotic is occurring during the complexation reaction. Salinomycin coordinates with cadmium(II) ions as a bidentate monoanionic ligand through the deprotonated carboxylic moiety and one of the hydroxyl groups to yield 1. Two salinomycin anions occupy the equatorial plane of the Cd(II) center, while two water molecules take the axial positions of the inner coordination sphere of the metal(II) cation. Complex 2 consists of monoanionic salinomycin acting in polydentate coordination mode in a molar ratio of 1: 1 to the metal ion with one nitrate ion for charge compensation. Conclusion The formation of the salinomycin heavy metal(II) complexes indicates a possible antidote activity of the ligand in case of chronic/acute intoxications likely to occur in the stock farming.
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Affiliation(s)
- Juliana Ivanova
- Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Acad, G, Bontchev Str,, build, 9, 1113 Sofia, Bulgaria.
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22
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Koch K, Afonin S, Ieronimo M, Berditsch M, Ulrich AS. Solid-State 19F-NMR of Peptides in Native Membranes. Top Curr Chem (Cham) 2011; 306:89-118. [DOI: 10.1007/128_2011_162] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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