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Bregnhøj M, Thorning F, Ogilby PR. Singlet Oxygen Photophysics: From Liquid Solvents to Mammalian Cells. Chem Rev 2024. [PMID: 39106038 DOI: 10.1021/acs.chemrev.4c00105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/07/2024]
Abstract
Molecular oxygen, O2, has long provided a cornerstone for studies in chemistry, physics, and biology. Although the triplet ground state, O2(X3Σg-), has garnered much attention, the lowest excited electronic state, O2(a1Δg), commonly called singlet oxygen, has attracted appreciable interest, principally because of its unique chemical reactivity in systems ranging from the Earth's atmosphere to biological cells. Because O2(a1Δg) can be produced and deactivated in processes that involve light, the photophysics of O2(a1Δg) are equally important. Moreover, pathways for O2(a1Δg) deactivation that regenerate O2(X3Σg-), which address fundamental principles unto themselves, kinetically compete with the chemical reactions of O2(a1Δg) and, thus, have practical significance. Due to technological advances (e.g., lasers, optical detectors, microscopes), data acquired in the past ∼20 years have increased our understanding of O2(a1Δg) photophysics appreciably and facilitated both spatial and temporal control over the behavior of O2(a1Δg). One goal of this Review is to summarize recent developments that have broad ramifications, focusing on systems in which oxygen forms a contact complex with an organic molecule M (e.g., a liquid solvent). An important concept is the role played by the M+•O2-• charge-transfer state in both the formation and deactivation of O2(a1Δg).
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Affiliation(s)
- Mikkel Bregnhøj
- Department of Chemistry, Aarhus University, 140 Langelandsgade, Aarhus 8000, Denmark
| | - Frederik Thorning
- Department of Chemistry, Aarhus University, 140 Langelandsgade, Aarhus 8000, Denmark
| | - Peter R Ogilby
- Department of Chemistry, Aarhus University, 140 Langelandsgade, Aarhus 8000, Denmark
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2
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Harla I, Pawluś W, Zarębski M, Dobrucki JW. Induction of DNA single- and double-strand breaks by excited intra- or extracellular green fluorescent protein. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2024; 259:113001. [PMID: 39180910 DOI: 10.1016/j.jphotobiol.2024.113001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2024] [Revised: 07/28/2024] [Accepted: 07/31/2024] [Indexed: 08/27/2024]
Abstract
Green fluorescent protein (GFP) has opened vast new avenues in studies of live cells and is generally perceived as a benign, nontoxic and harmless fluorescent tag. We demonstrat that excited GFP is capable of inducing substantial DNA damage in cells expressing fusion proteins. In the presence of GFP, even low doses of blue light (12 μJ) induce single strand breaks (SSBs). When the fluorescence of GFP located in the cell nucleus or in the cytoplasm is excited by a much higher dose (17 mJ), DNA double-strand breaks (DSBs) are also induced. Such breaks are induced even when GFP is placed and illuminated in culture medium outside of living cells. We demonstrate that DNA damage is induced by singlet oxygen, which is generated by excited GFP. Although short exposures of live cells to exciting light typically used in fluorescence microscopy induce SSBs but carry little risk of inducing DNA double-strand breaks, larger doses, which may be used in FRAP, FLIM, FCS and super-resolution fluorescence microscopy studies, are capable of inducing not only numerous SSBs but also DSBs.
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Affiliation(s)
- Izabela Harla
- Department of Cell Biophysics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland; Doctoral School of Exact and Natural Sciences, Jagiellonian University, Kraków, Poland
| | - Weronika Pawluś
- Department of Cell Biophysics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland
| | - Mirosław Zarębski
- Department of Cell Biophysics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland
| | - Jurek W Dobrucki
- Department of Cell Biophysics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland.
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3
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Bui TYH, De Zitter E, Moeyaert B, Pecqueur L, Srinivasu BY, Economou A, Fontecave M, Van Meervelt L, Dedecker P, Pedre B. Oxygen-induced chromophore degradation in the photoswitchable red fluorescent protein rsCherry. Int J Biol Macromol 2023; 239:124179. [PMID: 36972828 DOI: 10.1016/j.ijbiomac.2023.124179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 03/11/2023] [Accepted: 03/22/2023] [Indexed: 03/29/2023]
Abstract
Reversibly switchable monomeric Cherry (rsCherry) is a photoswitchable variant of the red fluorescent protein mCherry. We report that this protein gradually and irreversibly loses its red fluorescence in the dark over a period of months at 4 °C and a few days at 37 °C. We also find that its ancestor, mCherry, undergoes a similar fluorescence loss but at a slower rate. X-ray crystallography and mass spectrometry reveal that this is caused by the cleavage of the p-hydroxyphenyl ring from the chromophore and the formation of two novel types of cyclic structures at the remaining chromophore moiety. Overall, our work sheds light on a new process occurring within fluorescent proteins, further adding to the chemical diversity and versatility of these molecules.
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Affiliation(s)
- Thi Yen Hang Bui
- Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU, Leuven, Belgium
| | - Elke De Zitter
- Université Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France
| | - Benjamien Moeyaert
- Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU, Leuven, Belgium
| | - Ludovic Pecqueur
- Laboratoire de Chimie des Processus Biologiques, Collège de France, UMR 8229 CNRS, Sorbonne Université, PSL University, Paris, France
| | - Bindu Y Srinivasu
- Laboratory of Molecular Bacteriology, Rega Institute, KU, Leuven, Belgium
| | | | - Marc Fontecave
- Laboratoire de Chimie des Processus Biologiques, Collège de France, UMR 8229 CNRS, Sorbonne Université, PSL University, Paris, France
| | - Luc Van Meervelt
- Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU, Leuven, Belgium
| | - Peter Dedecker
- Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU, Leuven, Belgium.
| | - Brandán Pedre
- Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU, Leuven, Belgium.
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4
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Montali C, Abbruzzetti S, Franzen A, Casini G, Bruno S, Delcanale P, Burgstaller S, Ramadani-Muja J, Malli R, Gensch T, Viappiani C. Nitric Oxide Sensing by a Blue Fluorescent Protein. Antioxidants (Basel) 2022; 11:2229. [PMID: 36421416 PMCID: PMC9686608 DOI: 10.3390/antiox11112229] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 11/07/2022] [Accepted: 11/09/2022] [Indexed: 09/19/2023] Open
Abstract
S-Nitrosylation of cysteine residues is an important molecular mechanism for dynamic, post-translational regulation of several proteins, providing a ubiquitous redox regulation. Cys residues are present in several fluorescent proteins (FP), including members of the family of Aequorea victoria Green Fluorescent Protein (GFP)-derived FPs, where two highly conserved cysteine residues contribute to a favorable environment for the autocatalytic chromophore formation reaction. The effect of nitric oxide on the fluorescence properties of FPs has not been investigated thus far, despite the tremendous role FPs have played for 25 years as tools in cell biology. We have examined the response to nitric oxide of fluorescence emission by the blue-emitting fluorescent protein mTagBFP2. To our surprise, upon exposure to micromolar concentrations of nitric oxide, we observed a roughly 30% reduction in fluorescence quantum yield and lifetime. Recovery of fluorescence emission is observed after treatment with Na-dithionite. Experiments on related fluorescent proteins from different families show similar nitric oxide sensitivity of their fluorescence. We correlate the effect with S-nitrosylation of Cys residues. Mutation of Cys residues in mTagBFP2 removes its nitric oxide sensitivity. Similarly, fluorescent proteins devoid of Cys residues are insensitive to nitric oxide. We finally show that mTagBFP2 can sense exogenously generated nitric oxide when expressed in a living mammalian cell. We propose mTagBFP2 as the starting point for a new class of genetically encoded nitric oxide sensors based on fluorescence lifetime imaging.
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Affiliation(s)
- Chiara Montali
- Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università di Parma, Parco Area delle Scienze 7A, 43124 Parma, Italy
| | - Stefania Abbruzzetti
- Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università di Parma, Parco Area delle Scienze 7A, 43124 Parma, Italy
| | - Arne Franzen
- Institute of Biological Information Processing (IBI-1: Molecular and Cellular Physiology), Forschungszentrum Jülich, Leo-Brandt-Straße, D-52428 Jülich, Germany
| | - Giorgia Casini
- Institute of Biological Information Processing (IBI-1: Molecular and Cellular Physiology), Forschungszentrum Jülich, Leo-Brandt-Straße, D-52428 Jülich, Germany
| | - Stefano Bruno
- Dipartimento di Scienze degli Alimenti e del Farmaco, Università di Parma, Parco Area delle Scienze 23/A, 43124 Parma, Italy
| | - Pietro Delcanale
- Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università di Parma, Parco Area delle Scienze 7A, 43124 Parma, Italy
| | - Sandra Burgstaller
- Molecular Biology and Biochemistry, Gottfried Schatz Research Center, Medical University of Graz, Neue Stiftingtalstraße 6/6, 8010 Graz, Austria
| | - Jeta Ramadani-Muja
- Molecular Biology and Biochemistry, Gottfried Schatz Research Center, Medical University of Graz, Neue Stiftingtalstraße 6/6, 8010 Graz, Austria
| | - Roland Malli
- Molecular Biology and Biochemistry, Gottfried Schatz Research Center, Medical University of Graz, Neue Stiftingtalstraße 6/6, 8010 Graz, Austria
| | - Thomas Gensch
- Institute of Biological Information Processing (IBI-1: Molecular and Cellular Physiology), Forschungszentrum Jülich, Leo-Brandt-Straße, D-52428 Jülich, Germany
| | - Cristiano Viappiani
- Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università di Parma, Parco Area delle Scienze 7A, 43124 Parma, Italy
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Krasowska J, Pierzchała K, Bzowska A, Forró L, Sienkiewicz A, Wielgus-Kutrowska B. Chromophore of an Enhanced Green Fluorescent Protein Can Play a Photoprotective Role Due to Photobleaching. Int J Mol Sci 2021; 22:ijms22168565. [PMID: 34445269 PMCID: PMC8395242 DOI: 10.3390/ijms22168565] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 08/03/2021] [Accepted: 08/04/2021] [Indexed: 11/16/2022] Open
Abstract
Under stress conditions, elevated levels of cellular reactive oxygen species (ROS) may impair crucial cellular structures. To counteract the resulting oxidative damage, living cells are equipped with several defense mechanisms, including photoprotective functions of specific proteins. Here, we discuss the plausible ROS scavenging mechanisms by the enhanced green fluorescent protein, EGFP. To check if this protein could fulfill a photoprotective function, we employed electron spin resonance (ESR) in combination with spin-trapping. Two organic photosensitizers, rose bengal and methylene blue, as well as an inorganic photocatalyst, nano-TiO2, were used to photogenerate ROS. Spin-traps, TMP-OH and DMPO, and a nitroxide radical, TEMPOL, served as molecular targets for ROS. Our results show that EGFP quenches various forms of ROS, including superoxide radicals and singlet oxygen. Compared to the three proteins PNP, papain, and BSA, EGFP revealed high ROS quenching ability, which suggests its photoprotective role in living systems. Damage to the EGFP chromophore was also observed under strong photo-oxidative conditions. This study contributes to the discussion on the protective function of fluorescent proteins homologous to the green fluorescent protein (GFP). It also draws attention to the possible interactions of GFP-like proteins with ROS in systems where such proteins are used as biological markers.
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Affiliation(s)
- Joanna Krasowska
- Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland; (J.K.); (A.B.)
| | - Katarzyna Pierzchała
- Laboratory for Functional and Metabolic Imaging (LIFMET), Institute of Physics (IPHYS), School of Basic Sciences (SB), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland;
- Laboratory of Physics of Complex Matter (LPMC), Institute of Physics (IPHYS), School of Basic Sciences (SB), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland;
| | - Agnieszka Bzowska
- Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland; (J.K.); (A.B.)
| | - László Forró
- Laboratory of Physics of Complex Matter (LPMC), Institute of Physics (IPHYS), School of Basic Sciences (SB), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland;
| | - Andrzej Sienkiewicz
- Laboratory of Physics of Complex Matter (LPMC), Institute of Physics (IPHYS), School of Basic Sciences (SB), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland;
- Laboratory for Quantum Magnetism (LQM), Institute of Physics (IPHYS), School of Basic Sciences (SB), École Polytechnique Fédérale de Lausanne (EPFL), Station 3, CH-1015 Lausanne, Switzerland
- ADSresonances, Route de Genève 60B, CH-1028 Préverenges, Switzerland
- Correspondence: (A.S.); (B.W.-K.)
| | - Beata Wielgus-Kutrowska
- Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland; (J.K.); (A.B.)
- Correspondence: (A.S.); (B.W.-K.)
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6
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Abstract
We examine changes in the picosecond structural dynamics with irreversible photobleaching of red fluorescent proteins (RFP) mCherry, mOrange2 and TagRFP-T. Measurements of the protein dynamical transition using terahertz time-domain spectroscopy show in all cases an increase in the turn-on temperature in the bleached state. The result is surprising given that there is little change in the protein surface, and thus, the solvent dynamics held responsible for the transition should not change. A spectral analysis of the measurements guided by quasiharmonic calculations of the protein absorbance reveals that indeed the solvent dynamical turn-on temperature is independent of the thermal stability/photostate however the protein dynamical turn-on temperature shifts to higher temperatures. This is the first demonstration of switching the protein dynamical turn-on temperature with protein functional state. The observed shift in protein dynamical turn-on temperature relative to the solvent indicates an increase in the required mobile waters necessary for the protein picosecond motions, that is, these motions are more collective. Melting-point measurements reveal that the photobleached state is more thermally stable, and structural analysis of related RFP’s shows that there is an increase in internal water channels as well as a more uniform atomic root mean squared displacement. These observations are consistent with previous suggestions that water channels form with extended light excitation providing O2 access to the chromophore and subsequent fluorescence loss. We report that these same channels increase internal coupling enhancing thermal stability and collectivity of the picosecond protein motions. The terahertz spectroscopic characterization of the protein and solvent dynamical onsets can be applied generally to measure changes in collectivity of protein motions.
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7
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Seidi Damyeh M, Mereddy R, Netzel ME, Sultanbawa Y. An insight into curcumin-based photosensitization as a promising and green food preservation technology. Compr Rev Food Sci Food Saf 2020; 19:1727-1759. [PMID: 33337095 DOI: 10.1111/1541-4337.12583] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Revised: 05/08/2020] [Accepted: 05/12/2020] [Indexed: 12/11/2022]
Abstract
Consumer awareness on the side effects of chemical preservatives has increased the demand for natural preservation technologies. An efficient and sustainable alternative to current conventional preservation techniques should guarantee food safety and retain its quality with minimal side effects. Photosensitization, utilizing light and a natural photosensitizer, has been postulated as a viable and green alternative to the current conventional preservation techniques. The potential of curcumin as a natural photosensitizer is reviewed in this paper as a practical guide to develop a safe and effective decontamination tool for industrial use. The fundamentals of the photosensitization mechanism are discussed, with the main emphasis on the natural photosensitizer, curcumin, and its application to inactivate microorganisms as well as to enhance the shelf life of foods. Photosensitization has shown promising results in inactivating a wide spectrum of microorganisms with no reported microbial resistance due to its particular lethal mode of targeting nucleic acids. Curcumin as a natural photosensitizer has recently been investigated and demonstrated efficacy in decontamination and delaying spoilage. Moreover, studies have shown the beneficial impact of an appropriate encapsulation technique to enhance the cellular uptake of photosensitizers, and therefore, the phototoxicity. Further studies relating to improved delivery of natural photosensitizers with inherent poor solubility should be conducted. Also, detailed studies on various food products are warranted to better understand the impact of encapsulation on curcumin photophysical properties, photo-driven release mechanism, and nutritional and organoleptic properties of treated foods.
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Affiliation(s)
- Maral Seidi Damyeh
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Coopers Plains, QLD, Australia
| | - Ram Mereddy
- Department of Agriculture and Fisheries, Queensland Government, Coopers Plains, QLD, Australia
| | - Michael E Netzel
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Coopers Plains, QLD, Australia
| | - Yasmina Sultanbawa
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Coopers Plains, QLD, Australia
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8
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Photoinduced damage of AsLOV2 domain is accompanied by increased singlet oxygen production due to flavin dissociation. Sci Rep 2020; 10:4119. [PMID: 32139757 PMCID: PMC7058016 DOI: 10.1038/s41598-020-60861-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Accepted: 02/13/2020] [Indexed: 01/05/2023] Open
Abstract
Flavin mononucleotide (FMN) belongs to the group of very efficient endogenous photosensitizers producing singlet oxygen, 1O2, but with limited ability to be targeted. On the other hand, in genetically-encoded photosensitizers, which can be targeted by means of various tags, the efficiency of FMN to produce 1O2 is significantly diminished due to its interactions with surrounding amino acid residues. Recently, an increase of 1O2 production yield by FMN buried in a protein matrix was achieved by a decrease of quenching of the cofactor excited states by weakening of the protein-FMN interactions while still forming a complex. Here, we suggest an alternative approach which relies on the blue light irradiation-induced dissociation of FMN to solvent. This dissociation unlocks the full capacity of FMN as 1O2 producer. Our suggestion is based on the study of an irradiation effect on two variants of the LOV2 domain from Avena sativa; wild type, AsLOV2 wt, and the variant with a replaced cysteine residue, AsLOV2 C450A. We detected irradiation-induced conformational changes as well as oxidation of several amino acids in both AsLOV2 variants. Detailed analysis of these observations indicates that irradiation-induced increase in 1O2 production is caused by a release of FMN from the protein. Moreover, an increased FMN dissociation from AsLOV2 wt in comparison with AsLOV2 C450A points to a role of C450 oxidation in repelling the cofactor from the protein.
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9
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Hally C, Delcanale P, Nonell S, Viappiani C, Abbruzzetti S. Photosensitizing proteins for antibacterial photodynamic inactivation. TRANSLATIONAL BIOPHOTONICS 2020. [DOI: 10.1002/tbio.201900031] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Affiliation(s)
- Cormac Hally
- Institut Quimic de Sarrià, Universitat Ramon Llull Barcelona Spain
- Dipartimento di Scienze Matematiche, Fisiche e InformaticheUniversità di Parma Parma Italy
| | - Pietro Delcanale
- Institute for Bioengineering of Catalonia (IBEC), the Barcelona Institute of Science and Technology (BIST) Barcelona Spain
| | - Santi Nonell
- Institut Quimic de Sarrià, Universitat Ramon Llull Barcelona Spain
| | - Cristiano Viappiani
- Dipartimento di Scienze Matematiche, Fisiche e InformaticheUniversità di Parma Parma Italy
| | - Stefania Abbruzzetti
- Dipartimento di Scienze Matematiche, Fisiche e InformaticheUniversità di Parma Parma Italy
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10
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Herman P, Holoubek A, Brodska B. Lifetime-based photoconversion of EGFP as a tool for FLIM. Biochim Biophys Acta Gen Subj 2019; 1863:266-277. [DOI: 10.1016/j.bbagen.2018.10.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Revised: 10/25/2018] [Accepted: 10/26/2018] [Indexed: 01/10/2023]
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An optogenetic toolbox of LOV-based photosensitizers for light-driven killing of bacteria. Sci Rep 2018; 8:15021. [PMID: 30301917 PMCID: PMC6177443 DOI: 10.1038/s41598-018-33291-4] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Accepted: 09/26/2018] [Indexed: 01/04/2023] Open
Abstract
Flavin-binding fluorescent proteins (FPs) are genetically encoded in vivo reporters, which are derived from microbial and plant LOV photoreceptors. In this study, we comparatively analyzed ROS formation and light-driven antimicrobial efficacy of eleven LOV-based FPs. In particular, we determined singlet oxygen (1O2) quantum yields and superoxide photosensitization activities via spectroscopic assays and performed cell toxicity experiments in E. coli. Besides miniSOG and SOPP, which have been engineered to generate 1O2, all of the other tested flavoproteins were able to produce singlet oxygen and/or hydrogen peroxide but exhibited remarkable differences in ROS selectivity and yield. Accordingly, most LOV-FPs are potent photosensitizers, which can be used for light-controlled killing of bacteria. Furthermore, the two variants Pp2FbFP and DsFbFP M49I, exhibiting preferential photosensitization of singlet oxygen or singlet oxygen and superoxide, respectively, were shown to be new tools for studying specific ROS-induced cell signaling processes. The tested LOV-FPs thus further expand the toolbox of optogenetic sensitizers usable for a broad spectrum of microbiological and biomedical applications.
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12
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Leem JW, Park J, Kim S, Kim S, Choi SH, Choi K, Kim YL. Green-Light-Activated Photoreaction via Genetic Hybridization of Far-Red Fluorescent Protein and Silk. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2018; 5:1700863. [PMID: 29938168 PMCID: PMC6010726 DOI: 10.1002/advs.201700863] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Revised: 02/15/2018] [Indexed: 06/01/2023]
Abstract
Fluorescent proteins often result in phototoxicity and cytotoxicity, in particular because some red fluorescent proteins produce and release reactive oxygen species (ROS). The photogeneration of ROS is considered as a detrimental side effect in cellular imaging or is proactively utilized for ablating cancerous tissue. As ancient textiles or biomaterials, silk produced by silkworms can directly be used as fabrics or be processed into materials and structures to host other functional nanomaterials. It is reported that transgenic fusion of far-red fluorescent protein (mKate2) with silk provides a photosensitizer hybridization platform for photoinducible control of ROS. Taking advantage of green (visible) light activation, native and regenerated mKate2 silk can produce and release superoxide and singlet oxygen, in a comparable manner of visible light-driven plasmonic photocatalysis. Thus, the genetic expression of mKate2 in silk offers immediately exploitable and scalable photocatalyst-like biomaterials. It is further envisioned that mKate2 silk can potentially rule out hazardous concerns associated with foreign semiconductor photocatalytic nanomaterials.
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Affiliation(s)
- Jung Woo Leem
- Weldon School of Biomedical EngineeringPurdue UniversityWest LafayetteIN47907USA
| | - Jongwoo Park
- Department of Agricultural BiologyNational Institute of Agricultural SciencesRural Development AdministrationWanjuJeollabuk‐do55365Republic of Korea
| | - Seong‐Wan Kim
- Department of Agricultural BiologyNational Institute of Agricultural SciencesRural Development AdministrationWanjuJeollabuk‐do55365Republic of Korea
| | - Seong‐Ryul Kim
- Department of Agricultural BiologyNational Institute of Agricultural SciencesRural Development AdministrationWanjuJeollabuk‐do55365Republic of Korea
| | - Seung Ho Choi
- Weldon School of Biomedical EngineeringPurdue UniversityWest LafayetteIN47907USA
| | - Kwang‐Ho Choi
- Department of Agricultural BiologyNational Institute of Agricultural SciencesRural Development AdministrationWanjuJeollabuk‐do55365Republic of Korea
| | - Young L. Kim
- Weldon School of Biomedical EngineeringPurdue UniversityWest LafayetteIN47907USA
- Regenstrief Center for Healthcare EngineeringPurdue UniversityWest LafayetteIN47907USA
- Purdue Quantum CenterPurdue UniversityWest LafayetteIN47907USA
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13
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Leem JW, Kim SR, Choi KH, Kim YL. Plasmonic photocatalyst-like fluorescent proteins for generating reactive oxygen species. NANO CONVERGENCE 2018; 5:8. [PMID: 29607289 PMCID: PMC5862923 DOI: 10.1186/s40580-018-0140-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Accepted: 03/06/2018] [Indexed: 06/08/2023]
Abstract
The recent advances in photocatalysis have opened a variety of new possibilities for energy and biomedical applications. In particular, plasmonic photocatalysis using hybridization of semiconductor materials and metal nanoparticles has recently facilitated the rapid progress in enhancing photocatalytic efficiency under visible or solar light. One critical underlying aspect of photocatalysis is that it generates and releases reactive oxygen species (ROS) as intermediate or final products upon light excitation or activation. Although plasmonic photocatalysis overcomes the limitation of UV irradiation, synthesized metal/semiconductor nanomaterial photocatalysts often bring up biohazardous and environmental issues. In this respect, this review article is centered in identifying natural photosensitizing organic materials that can generate similar types of ROS as those of plasmonic photocatalysis. In particular, we propose the idea of plasmonic photocatalyst-like fluorescent proteins for ROS generation under visible light irradiation. We recapitulate fluorescent proteins that have Type I and Type II photosensitization properties in a comparable manner to plasmonic photocatalysis. Plasmonic photocatalysis and protein photosensitization have not yet been compared systemically in terms of ROS photogeneration under visible light, although the phototoxicity and cytotoxicity of some fluorescent proteins are well recognized. A comprehensive understanding of plasmonic photocatalyst-like fluorescent proteins and their potential advantages will lead us to explore new environmental, biomedical, and defense applications.
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Affiliation(s)
- Jung Woo Leem
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN 47907 USA
| | - Seong-Ryul Kim
- Department of Agricultural Biology, National Institute of Agricultural Sciences, Rural Development Administration, Wanju, Jeollabuk-do 55365 Republic of Korea
| | - Kwang-Ho Choi
- Department of Agricultural Biology, National Institute of Agricultural Sciences, Rural Development Administration, Wanju, Jeollabuk-do 55365 Republic of Korea
| | - Young L. Kim
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN 47907 USA
- Regenstrief Center for Healthcare Engineering, West Lafayette, IN 47907 USA
- Purdue Quantum Center, Purdue University, West Lafayette, IN 47907 USA
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14
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Rodríguez-Pulido A, Torra J, Mejías SH, Cortajarena AL, Ruiz-González R, Nonell S, Flors C. Fluorescent Flavoprotein Heterodimers: Combining Photostability with Singlet Oxygen Generation. CHEMPHOTOCHEM 2018. [DOI: 10.1002/cptc.201800002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Alberto Rodríguez-Pulido
- Madrid Institute for Advanced Studies in Nanoscience (IMDEA Nanoscience) and; Nanobiotechnology Unit Associated to the National Center for Biotechnology (CNB-CSIC); C/ Faraday 9 28049 Madrid Spain
| | - Joaquim Torra
- Institut Químic de Sarrià; Universitat Ramon Llull; Via Augusta 390 08017 Barcelona Spain
| | - Sara H. Mejías
- Madrid Institute for Advanced Studies in Nanoscience (IMDEA Nanoscience) and; Nanobiotechnology Unit Associated to the National Center for Biotechnology (CNB-CSIC); C/ Faraday 9 28049 Madrid Spain
| | - Aitziber L. Cortajarena
- Madrid Institute for Advanced Studies in Nanoscience (IMDEA Nanoscience) and; Nanobiotechnology Unit Associated to the National Center for Biotechnology (CNB-CSIC); C/ Faraday 9 28049 Madrid Spain
- CIC biomaGUNE; Parque Tecnológico de San Sebastián; Paseo de Miramón 182 20014 Donostia-San Sebastián Spain
- Ikerbasque, Basque Foundation for Science; Mª Díaz de Haro 3 48013 Bilbao Spain
| | - Rubén Ruiz-González
- Institut Químic de Sarrià; Universitat Ramon Llull; Via Augusta 390 08017 Barcelona Spain
| | - Santi Nonell
- Institut Químic de Sarrià; Universitat Ramon Llull; Via Augusta 390 08017 Barcelona Spain
| | - Cristina Flors
- Madrid Institute for Advanced Studies in Nanoscience (IMDEA Nanoscience) and; Nanobiotechnology Unit Associated to the National Center for Biotechnology (CNB-CSIC); C/ Faraday 9 28049 Madrid Spain
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15
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Mamontova AV, Grigoryev AP, Tsarkova AS, Lukyanov KA, Bogdanov AM. Struggle for photostability: Bleaching mechanisms of fluorescent proteins. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2018. [DOI: 10.1134/s1068162017060085] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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16
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Marazzi M, Besancenot V, Gattuso H, Lassalle HP, Grandemange S, Monari A. Photophysics of the Singlet Oxygen Sensor Green Chromophore: Self-Production of 1O2 Explained by Molecular Modeling. J Phys Chem B 2017; 121:7586-7592. [DOI: 10.1021/acs.jpcb.7b04383] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Marco Marazzi
- Theory-Modeling-Simulation
SRSMC, Université de Lorraine Nancy, 54506 Vandoeuvre-lès-Nancy, France
- Theory-Modeling-Simulation
SRSMC, CNRS, 54506 Vandoeuvre-lès-Nancy, France
| | - V. Besancenot
- Université de Lorraine Nancy and CNRS, CRAN, 54506 Vandoeuvre-lès-Nancy, France
| | - Hugo Gattuso
- Theory-Modeling-Simulation
SRSMC, Université de Lorraine Nancy, 54506 Vandoeuvre-lès-Nancy, France
- Theory-Modeling-Simulation
SRSMC, CNRS, 54506 Vandoeuvre-lès-Nancy, France
| | | | | | - Antonio Monari
- Theory-Modeling-Simulation
SRSMC, Université de Lorraine Nancy, 54506 Vandoeuvre-lès-Nancy, France
- Theory-Modeling-Simulation
SRSMC, CNRS, 54506 Vandoeuvre-lès-Nancy, France
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17
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Westberg M, Bregnhøj M, Etzerodt M, Ogilby PR. Temperature Sensitive Singlet Oxygen Photosensitization by LOV-Derived Fluorescent Flavoproteins. J Phys Chem B 2017; 121:2561-2574. [PMID: 28257211 DOI: 10.1021/acs.jpcb.7b00561] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Optogenetic sensitizers that selectively produce a given reactive oxygen species (ROS) constitute a promising tool for studying cell signaling processes with high levels of spatiotemporal control. However, to harness the full potential of this tool for live cell studies, the photophysics of currently available systems need to be explored further and optimized. Of particular interest in this regard, are the flavoproteins miniSOG and SOPP, both of which (1) contain the chromophore flavin mononucleotide, FMN, in a LOV-derived protein enclosure, and (2) photosensitize the production of singlet oxygen, O2(a1Δg). Here we present an extensive experimental study of the singlet and triplet state photophysics of FMN in SOPP and miniSOG over a physiologically relevant temperature range. Although changes in temperature only affect the singlet excited state photophysics slightly, the processes that influence the deactivation of the triplet excited state are more sensitive to temperature. Most notably, for both proteins, the rate constant for quenching of 3FMN by ground state oxygen, O2(X3Σg-), increases ∼10-fold upon increasing the temperature from 10 to 43 °C, while the oxygen-independent channels of triplet state deactivation are less affected. As a consequence, this increase in temperature results in higher yields of O2(a1Δg) formation for both SOPP and miniSOG. We also show that the quantum yields of O2(a1Δg) production by both miniSOG and SOPP are mainly limited by the fraction of FMN triplet states quenched by O2(X3Σg-). The results presented herein provide a much-needed quantitative framework that will facilitate the future development of optogenetic ROS sensitizers.
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Affiliation(s)
- Michael Westberg
- Department of Chemistry, Aarhus University , DK-8000 Aarhus, Denmark
| | - Mikkel Bregnhøj
- Department of Chemistry, Aarhus University , DK-8000 Aarhus, Denmark
| | - Michael Etzerodt
- Department of Molecular Biology and Genetics, Aarhus University , DK-8000 Aarhus, Denmark
| | - Peter R Ogilby
- Department of Chemistry, Aarhus University , DK-8000 Aarhus, Denmark
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18
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Delcanale P, Montali C, Rodríguez-Amigo B, Abbruzzetti S, Bruno S, Bianchini P, Diaspro A, Agut M, Nonell S, Viappiani C. Zinc-Substituted Myoglobin Is a Naturally Occurring Photo-antimicrobial Agent with Potential Applications in Food Decontamination. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:8633-8639. [PMID: 27785913 DOI: 10.1021/acs.jafc.6b03368] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Zinc-substituted myoglobin (ZnMb) is a naturally occurring photosensitizer that generates singlet oxygen with a high quantum yield. Using a combination of photophysical and fluorescence imaging techniques, we demonstrate the interaction of ZnMb with Gram-positive Staphylococcus aureus and Gram-negative Escherichia coli. An efficient antibacterial action against S. aureus was observed, with a reduction up to 99.9999% in the number of colony-forming units, whereas no sizable effect was detected against E. coli. Because ZnMb is known to form during the maturation of additive-free not-cooked cured ham, the use of this protein as a built-in photodynamic agent may constitute a viable method for the decontamination of these food products from Gram-positive bacteria.
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Affiliation(s)
- Pietro Delcanale
- Dipartimento di Fisica e Scienze della Terra, Universita degli Studi di Parma , viale delle Scienze 7A, 43124 Parma, Italy
| | - Chiara Montali
- Dipartimento di Fisica e Scienze della Terra, Universita degli Studi di Parma , viale delle Scienze 7A, 43124 Parma, Italy
| | - Beatriz Rodríguez-Amigo
- Institut Quimic de Sarrià, Universitat Ramon Llull , Via Augusta 390, 08017 Barcelona, Spain
| | - Stefania Abbruzzetti
- Dipartimento di Bioscienze, Universita degli Studi di Parma , viale delle Scienze 11A, 43124 Parma, Italy
- NEST, Istituto Nanoscienze, Consiglio Nazionale delle Ricerche , Piazza San Silvestro 12, 56127 Pisa, Italy
| | - Stefano Bruno
- Dipartimento di Farmacia, Universita degli Studi di Parma , viale delle Scienze 23A, 43124 Parma, Italy
| | - Paolo Bianchini
- Fondazione Istituto Italiano di Tecnologia , Via Morego 30, 16163 Genova, Italy
| | - Alberto Diaspro
- Fondazione Istituto Italiano di Tecnologia , Via Morego 30, 16163 Genova, Italy
| | - Montserrat Agut
- Institut Quimic de Sarrià, Universitat Ramon Llull , Via Augusta 390, 08017 Barcelona, Spain
| | - Santi Nonell
- Institut Quimic de Sarrià, Universitat Ramon Llull , Via Augusta 390, 08017 Barcelona, Spain
| | - Cristiano Viappiani
- Dipartimento di Fisica e Scienze della Terra, Universita degli Studi di Parma , viale delle Scienze 7A, 43124 Parma, Italy
- NEST, Istituto Nanoscienze, Consiglio Nazionale delle Ricerche , Piazza San Silvestro 12, 56127 Pisa, Italy
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19
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Acharya A, Bogdanov AM, Grigorenko BL, Bravaya KB, Nemukhin AV, Lukyanov KA, Krylov AI. Photoinduced Chemistry in Fluorescent Proteins: Curse or Blessing? Chem Rev 2016; 117:758-795. [PMID: 27754659 DOI: 10.1021/acs.chemrev.6b00238] [Citation(s) in RCA: 178] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Photoinduced reactions play an important role in the photocycle of fluorescent proteins from the green fluorescent protein (GFP) family. Among such processes are photoisomerization, photooxidation/photoreduction, breaking and making of covalent bonds, and excited-state proton transfer (ESPT). Many of these transformations are initiated by electron transfer (ET). The quantum yields of these processes vary significantly, from nearly 1 for ESPT to 10-4-10-6 for ET. Importantly, even when quantum yields are relatively small, at the conditions of repeated illumination the overall effect is significant. Depending on the task at hand, fluorescent protein photochemistry is regarded either as an asset facilitating new applications or as a nuisance leading to the loss of optical output. The phenomena arising due to phototransformations include (i) large Stokes shifts, (ii) photoconversions, photoactivation, and photoswitching, (iii) phototoxicity, (iv) blinking, (v) permanent bleaching, and (vi) formation of long-lived intermediates. The focus of this review is on the most recent experimental and theoretical work on photoinduced transformations in fluorescent proteins. We also provide an overview of the photophysics of fluorescent proteins, highlighting the interplay between photochemistry and other channels (fluorescence, radiationless relaxation, and intersystem crossing). The similarities and differences with photochemical processes in other biological systems and in dyes are also discussed.
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Affiliation(s)
- Atanu Acharya
- Department of Chemistry, University of Southern California , Los Angeles, California 90089-0482, United States
| | - Alexey M Bogdanov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry , Moscow, Russia.,Nizhny Novgorod State Medical Academy , Nizhny Novgorod, Russia
| | - Bella L Grigorenko
- Department of Chemistry, Lomonosov Moscow State University , Moscow, Russia.,Emanuel Institute of Biochemical Physics, Russian Academy of Sciences , Moscow, Russia
| | - Ksenia B Bravaya
- Department of Chemistry, Boston University , Boston, Massachusetts United States
| | - Alexander V Nemukhin
- Department of Chemistry, Lomonosov Moscow State University , Moscow, Russia.,Emanuel Institute of Biochemical Physics, Russian Academy of Sciences , Moscow, Russia
| | - Konstantin A Lukyanov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry , Moscow, Russia.,Nizhny Novgorod State Medical Academy , Nizhny Novgorod, Russia
| | - Anna I Krylov
- Department of Chemistry, University of Southern California , Los Angeles, California 90089-0482, United States
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20
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Westberg M, Bregnhøj M, Banerjee C, Blázquez-Castro A, Breitenbach T, Ogilby PR. Exerting better control and specificity with singlet oxygen experiments in live mammalian cells. Methods 2016; 109:81-91. [DOI: 10.1016/j.ymeth.2016.07.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Revised: 07/01/2016] [Accepted: 07/03/2016] [Indexed: 12/25/2022] Open
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21
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Bogdanov AM, Acharya A, Titelmayer AV, Mamontova AV, Bravaya KB, Kolomeisky AB, Lukyanov KA, Krylov AI. Turning On and Off Photoinduced Electron Transfer in Fluorescent Proteins by π-Stacking, Halide Binding, and Tyr145 Mutations. J Am Chem Soc 2016; 138:4807-17. [DOI: 10.1021/jacs.6b00092] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Alexey M. Bogdanov
- Shemiakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia
- Nizhny Novgorod State Medical Academy, Nizhny Novgorod 603005, Russia
| | - Atanu Acharya
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | | | | | - Ksenia B. Bravaya
- Department
of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | | | - Konstantin A. Lukyanov
- Shemiakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia
- Nizhny Novgorod State Medical Academy, Nizhny Novgorod 603005, Russia
| | - Anna I. Krylov
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
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22
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Macia N, Heyne B. Using photochemistry to understand and control the production of reactive oxygen species in biological environments. J Photochem Photobiol A Chem 2015. [DOI: 10.1016/j.jphotochem.2015.03.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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23
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Grigorenko BL, Nemukhin AV, Polyakov IV, Khrenova MG, Krylov AI. A Light-Induced Reaction with Oxygen Leads to Chromophore Decomposition and Irreversible Photobleaching in GFP-Type Proteins. J Phys Chem B 2015; 119:5444-52. [PMID: 25867185 DOI: 10.1021/acs.jpcb.5b02271] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Photobleaching and photostability of proteins of the green fluorescent protein (GFP) family are crucially important for practical applications of these widely used biomarkers. On the basis of simulations, we propose a mechanism for irreversible bleaching in GFP-type proteins under intense light illumination. The key feature of the mechanism is a photoinduced reaction of the chromophore with molecular oxygen (O2) inside the protein barrel leading to the chromophore's decomposition. Using quantum mechanics/molecular mechanics (QM/MM) modeling we show that a model system comprising the protein-bound Chro(-) and O2 can be excited to an electronic state of the intermolecular charge-transfer (CT) character (Chro(•)···O2(-•)). Once in the CT state, the system undergoes a series of chemical reactions with low activation barriers resulting in the cleavage of the bridging bond between the phenolic and imidazolinone rings and disintegration of the chromophore.
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Affiliation(s)
- Bella L Grigorenko
- †Department of Chemistry, M. V. Lomonosov Moscow State University, Leninskie Gory 1/3, Moscow, 119991, Russian Federation.,‡N. M. Emanuel Institute of Biochemical Physics, Russian Academy of Sciences, Kosygina 4, Moscow, 119334, Russian Federation
| | - Alexander V Nemukhin
- †Department of Chemistry, M. V. Lomonosov Moscow State University, Leninskie Gory 1/3, Moscow, 119991, Russian Federation.,‡N. M. Emanuel Institute of Biochemical Physics, Russian Academy of Sciences, Kosygina 4, Moscow, 119334, Russian Federation
| | - Igor V Polyakov
- †Department of Chemistry, M. V. Lomonosov Moscow State University, Leninskie Gory 1/3, Moscow, 119991, Russian Federation
| | - Maria G Khrenova
- †Department of Chemistry, M. V. Lomonosov Moscow State University, Leninskie Gory 1/3, Moscow, 119991, Russian Federation
| | - Anna I Krylov
- §Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
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24
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Westberg M, Holmegaard L, Pimenta FM, Etzerodt M, Ogilby PR. Rational design of an efficient, genetically encodable, protein-encased singlet oxygen photosensitizer. J Am Chem Soc 2015; 137:1632-42. [PMID: 25575190 DOI: 10.1021/ja511940j] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Singlet oxygen, O(2)(a(1)Δ(g)), plays a key role in many processes of cell signaling. Limitations in mechanistic studies of such processes are generally associated with the difficulty of controlling the amount and location of O(2)(a(1)Δ(g)) production in or on a cell. As such, there is great need for a system that (a) selectively produces O(2)(a(1)Δ(g)) in appreciable and accurately quantifiable yields and (b) can be localized in a specific place at the suborganelle level. A genetically encodable, protein-encased photosensitizer is one way to achieve this goal. Through a systematic and rational approach involving mutations to a LOV2 protein that binds the chromophore flavin mononucleotide (FMN), we have developed a promising photosensitizer that overcomes many of the problems that affect related systems currently in use. Specifically, by decreasing the extent of hydrogen bonding between FMN and a specific amino acid residue in the local protein environment, we decrease the susceptibility of FMN to undesired photoinitiated electron-transfer reactions that kinetically compete with O(2)(a(1)Δ(g)) production. As a consequence, our protein-encased FMN system produces O(2)(a(1)Δ(g)) with the uniquely large quantum efficiency of 0.25 ± 0.03. We have also quantified other key photophysical parameters that characterize this sensitizer system, including unprecedented H(2)O/D(2)O solvent isotope effects on the O(2)(a(1)Δ(g)) formation kinetics and yields. As such, our results facilitate future systematic developments in this field.
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Affiliation(s)
- Michael Westberg
- Center for Oxygen Microscopy and Imaging, Chemistry Department and ‡Department of Molecular Biology and Genetics, Aarhus University , DK-8000, Aarhus, Denmark
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25
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Pimenta FM, Jensen JK, Etzerodt M, Ogilby PR. Protein-encapsulated bilirubin: paving the way to a useful probe for singlet oxygen. Photochem Photobiol Sci 2015; 14:665-77. [DOI: 10.1039/c4pp00408f] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Oxygen- and singlet-oxygen-dependent parameters that characterize the behavior of bilirubin encapsulated in a protein have been quantified.
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Affiliation(s)
- Frederico M. Pimenta
- Center for Oxygen Microscopy and Imaging
- Chemistry Department
- Aarhus University
- Aarhus
- Denmark
| | - Jan K. Jensen
- Department of Molecular Biology and Genetics
- Aarhus University
- Aarhus
- Denmark
| | - Michael Etzerodt
- Department of Molecular Biology and Genetics
- Aarhus University
- Aarhus
- Denmark
| | - Peter R. Ogilby
- Center for Oxygen Microscopy and Imaging
- Chemistry Department
- Aarhus University
- Aarhus
- Denmark
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26
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Torra J, Burgos-Caminal A, Endres S, Wingen M, Drepper T, Gensch T, Ruiz-González R, Nonell S. Singlet oxygen photosensitisation by the fluorescent protein Pp2FbFP L30M, a novel derivative of Pseudomonas putida flavin-binding Pp2FbFP. Photochem Photobiol Sci 2015; 14:280-7. [DOI: 10.1039/c4pp00338a] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The flavin-binding protein Pp2FbFP L30M shows a high singlet oxygen quantum yield.
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Affiliation(s)
- Joaquim Torra
- Institut Químic de Sarrià
- Universitat Ramon Llull
- Barcelona
- Spain
| | | | - Stephan Endres
- Institute of Molecular Enzyme Technology
- Heinrich-Heine-University Düsseldorf
- 52425 Jülich
- Germany
| | - Marcus Wingen
- Institute of Molecular Enzyme Technology
- Heinrich-Heine-University Düsseldorf
- 52425 Jülich
- Germany
| | - Thomas Drepper
- Institute of Molecular Enzyme Technology
- Heinrich-Heine-University Düsseldorf
- 52425 Jülich
- Germany
| | - Thomas Gensch
- Institute of Complex Systems 4 (ICS-4
- Cellular Biophysics)
- 52425 Jülich
- Germany
| | | | - Santi Nonell
- Institut Químic de Sarrià
- Universitat Ramon Llull
- Barcelona
- Spain
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27
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Duan C, Adam V, Byrdin M, Ridard J, Kieffer-Jaquinod S, Morlot C, Arcizet D, Demachy I, Bourgeois D. Structural Evidence for a Two-Regime Photobleaching Mechanism in a Reversibly Switchable Fluorescent Protein. J Am Chem Soc 2013; 135:15841-50. [DOI: 10.1021/ja406860e] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Chenxi Duan
- Université Grenoble Alpes, Institut de Biologie Structurale
(IBS), F-38027 Grenoble, France
- CNRS, IBS, F-38027 Grenoble, France
- CEA, DSV, IBS, F-38027 Grenoble, France
- Laboratoire
de Physiologie Cellulaire et Végétale, IRTSV, CNRS/CEA/INRA/Université Grenoble Alpes, Grenoble, 38054, France
| | - Virgile Adam
- Université Grenoble Alpes, Institut de Biologie Structurale
(IBS), F-38027 Grenoble, France
- CNRS, IBS, F-38027 Grenoble, France
- CEA, DSV, IBS, F-38027 Grenoble, France
- Laboratoire
de Physiologie Cellulaire et Végétale, IRTSV, CNRS/CEA/INRA/Université Grenoble Alpes, Grenoble, 38054, France
| | - Martin Byrdin
- Université Grenoble Alpes, Institut de Biologie Structurale
(IBS), F-38027 Grenoble, France
- CNRS, IBS, F-38027 Grenoble, France
- CEA, DSV, IBS, F-38027 Grenoble, France
- Laboratoire
de Physiologie Cellulaire et Végétale, IRTSV, CNRS/CEA/INRA/Université Grenoble Alpes, Grenoble, 38054, France
| | - Jacqueline Ridard
- Laboratoire
de Chimie Physique, UMR 8000, CNRS, Université Paris Sud 11, 91405 Orsay, France
| | | | - Cécile Morlot
- Université Grenoble Alpes, Institut de Biologie Structurale
(IBS), F-38027 Grenoble, France
- CNRS, IBS, F-38027 Grenoble, France
- CEA, DSV, IBS, F-38027 Grenoble, France
| | - Delphine Arcizet
- Université Grenoble Alpes, Institut de Biologie Structurale
(IBS), F-38027 Grenoble, France
- CNRS, IBS, F-38027 Grenoble, France
- CEA, DSV, IBS, F-38027 Grenoble, France
- Laboratoire
de Physiologie Cellulaire et Végétale, IRTSV, CNRS/CEA/INRA/Université Grenoble Alpes, Grenoble, 38054, France
| | - Isabelle Demachy
- Laboratoire
de Chimie Physique, UMR 8000, CNRS, Université Paris Sud 11, 91405 Orsay, France
| | - Dominique Bourgeois
- Université Grenoble Alpes, Institut de Biologie Structurale
(IBS), F-38027 Grenoble, France
- CNRS, IBS, F-38027 Grenoble, France
- CEA, DSV, IBS, F-38027 Grenoble, France
- Laboratoire
de Physiologie Cellulaire et Végétale, IRTSV, CNRS/CEA/INRA/Université Grenoble Alpes, Grenoble, 38054, France
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28
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Ruiz-González R, Cortajarena AL, Mejias SH, Agut M, Nonell S, Flors C. Singlet oxygen generation by the genetically encoded tag miniSOG. J Am Chem Soc 2013; 135:9564-7. [PMID: 23781844 DOI: 10.1021/ja4020524] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The genetically encodable fluorescent tag miniSOG is expected to revolutionize correlative light- and electron microscopy due to its ability to produce singlet oxygen upon light irradiation. The quantum yield of this process was reported as ΦΔ = 0.47 ± 0.05, as derived from miniSOG's ability to photooxidize the fluorescent probe anthracene dipropionic acid (ADPA). In this report, a significantly smaller value of ΦΔ = 0.03 ± 0.01 is obtained by two methods: direct measurement of its phosphorescence at 1275 nm and chemical trapping using uric acid as an alternative probe. We present insight into the photochemistry of miniSOG and ascertain the reasons for the discrepancy in ΦΔ values. We find that miniSOG oxidizes ADPA by both singlet oxygen-dependent and -independent processes. We also find that cumulative irradiation of miniSOG increases its ΦΔ value ~10-fold due to a photoinduced transformation of the protein. This may be the reason why miniSOG outperforms other fluorescent proteins reported to date as singlet oxygen generators.
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Affiliation(s)
- Rubén Ruiz-González
- Institut Quimic de Sarrià, Universitat Ramon Llull, Via Augusta 390, E-08017, Barcelona, Spain
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29
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Dedecker P, De Schryver FC, Hofkens J. Fluorescent Proteins: Shine on, You Crazy Diamond. J Am Chem Soc 2013; 135:2387-402. [DOI: 10.1021/ja309768d] [Citation(s) in RCA: 148] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Peter Dedecker
- Department of Chemistry, University of Leuven, Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Frans C. De Schryver
- Department of Chemistry, University of Leuven, Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Johan Hofkens
- Department of Chemistry, University of Leuven, Celestijnenlaan 200F, 3001 Heverlee, Belgium
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30
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Ruiz-González R, White JH, Agut M, Nonell S, Flors C. A genetically-encoded photosensitiser demonstrates killing of bacteria by purely endogenous singlet oxygen. Photochem Photobiol Sci 2012; 11:1411-3. [PMID: 22729069 DOI: 10.1039/c2pp25126d] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
TagRFP, a fluorescent protein capable of photosensitizing the production of singlet oxygen, was expressed in E. coli. Subsequent exposure to green light induced bacterial cell death in a light-dose dependent manner. It is demonstrated for the first time that intracellular singlet oxygen is sufficient to kill bacteria.
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Affiliation(s)
- Rubén Ruiz-González
- IQS School of Engineering, Universitat Ramon Llull, Vía Augusta 390, E-08017, Barcelona, Spain
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Bäumler W, Regensburger J, Knak A, Felgenträger A, Maisch T. UVA and endogenous photosensitizers – the detection of singlet oxygen by its luminescence. Photochem Photobiol Sci 2012; 11:107-17. [DOI: 10.1039/c1pp05142c] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Bravaya KB, Khrenova MG, Grigorenko BL, Nemukhin AV, Krylov AI. Effect of Protein Environment on Electronically Excited and Ionized States of the Green Fluorescent Protein Chromophore. J Phys Chem B 2011; 115:8296-303. [DOI: 10.1021/jp2020269] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Ksenia B. Bravaya
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Maria G. Khrenova
- Department of Chemistry, M.V. Lomonosov Moscow State University, Moscow 119991, Russia
| | - Bella L. Grigorenko
- Department of Chemistry, M.V. Lomonosov Moscow State University, Moscow 119991, Russia
| | - Alexander V. Nemukhin
- Department of Chemistry, M.V. Lomonosov Moscow State University, Moscow 119991, Russia
- N.M. Emanuel Institute of Biochemical Physics, Russian Academy of Sciences, Moscow 119334, Russia
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
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Ragàs X, Cooper LP, White JH, Nonell S, Flors C. Quantification of Photosensitized Singlet Oxygen Production by a Fluorescent Protein. Chemphyschem 2010; 12:161-5. [DOI: 10.1002/cphc.201000919] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2010] [Indexed: 12/12/2022]
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