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Pavlović RZ, Zhiquan L, Finnegan TJ, Waudby CA, Wang X, Gunawardana VWL, Zhu X, Wong CM, Hamby T, Moore CE, Hoefer N, McComb DW, Sevov CS, Badjić JD. Closed Aromatic Tubes-Capsularenes. Angew Chem Int Ed Engl 2022; 61:e202211304. [PMID: 35981224 PMCID: PMC9825917 DOI: 10.1002/anie.202211304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Indexed: 01/11/2023]
Abstract
In this study, we describe a synthetic method for incorporating arenes into closed tubes that we name capsularenes. First, we prepared vase-shaped molecular baskets 4-7. The baskets comprise a benzene base fused to three bicycle[2.2.1]heptane rings that extend into phthalimide (4), naphthalimide (6), and anthraceneimide sides (7), each carrying a dimethoxyethane acetal group. In the presence of catalytic trifluoroacetic acid (TFA), the acetals at top of 4, 6 and 7 change into aliphatic aldehydes followed by their intramolecular cyclization into 1,3,5-trioxane (1 H NMR spectroscopy). Such ring closure is nearly a quantitative process that furnishes differently sized capsularenes 1 (0.7×0.9 nm), 8 (0.7×1.1 nm;) and 9 (0.7×1.4 nm;) characterized by X-Ray crystallography, microcrystal electron diffraction, UV/Vis, fluorescence, cyclic voltammetry, and thermogravimetry. With exceptional rigidity, unique topology, great thermal stability, and perhaps tuneable optoelectronic characteristics, capsularenes hold promise for the construction of novel organic electronic devices.
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Affiliation(s)
- Radoslav Z. Pavlović
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | - Lei Zhiquan
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | - Tyler J. Finnegan
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | | | - Xiuze Wang
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | | | - Xingrong Zhu
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | - Curt M. Wong
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | - Taylor Hamby
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | - Curtis E. Moore
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | - Nicole Hoefer
- Center for Electron Microscopy and AnalysisThe Ohio State UniversityColumbusOH 43210USA
| | - David W. McComb
- Center for Electron Microscopy and AnalysisThe Ohio State UniversityColumbusOH 43210USA,Department of Materials Science and EngineeringThe Ohio State UniversityColumbusOH 43210USA
| | - Christo S. Sevov
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
| | - Jovica D. Badjić
- Department of Chemistry & BiochemistryThe Ohio State University100W. 18 AvenueColumbusOH 43210USA
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Pavlović RZ, Zhiquan L, Finnegan TJ, Waudby CA, Wang X, Gunawardana VWL, Zhu X, Wong CM, Hamby T, Moore CE, Hoefer N, McComb DW, Sevov CS, Badjic JD. Closed Aromatic Tubes ‐ Capsularenes. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202211304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
| | - Lei Zhiquan
- The Ohio State University Chemistry and Biochemistry UNITED STATES
| | | | | | - Xiuze Wang
- The Ohio State University Chemistry and Biochemistry UNITED STATES
| | | | - Xingrong Zhu
- The Ohio State University Chemistry and Biochemistry UNITED STATES
| | - Curt M. Wong
- The Ohio State University Chemistry and Biochemistry UNITED STATES
| | - Taylor Hamby
- The Ohio State University Chemistry and Biochemistry UNITED STATES
| | - Curtis E. Moore
- The Ohio State University Chemistry and Biochemistry UNITED STATES
| | - Nicole Hoefer
- The Ohio State University Center for Electron Microscopy and Analysis UNITED STATES
| | - David W McComb
- The Ohio State University Material Science and Engineering UNITED STATES
| | - Christo S. Sevov
- The Ohio State University Chemistry and Biochemistry UNITED STATES
| | - Jovica D Badjic
- Ohio State University Department of Chemistry 100 W. 18th Avenue 43210 Columbus UNITED STATES
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3
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Metal coordination to a deep cavitand promotes binding selectivities in water. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.03.039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Sun Q, Escobar L, de Jong J, Ballester P. Self-assembly of a water-soluble endohedrally functionalized coordination cage including polar guests. Chem Sci 2021; 12:13469-13476. [PMID: 34777766 PMCID: PMC8528040 DOI: 10.1039/d1sc03751j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 09/12/2021] [Indexed: 12/17/2022] Open
Abstract
Coordination cages containing endohedrally functionalized aromatic cavities are scarce in the literature. Herein, we report the self-assembly of a tetra-cationic super aryl-extended calix[4]pyrrole tetra-pyridyl ligand into a water-soluble Pd(ii)-cage featuring two endohedral polar binding sites. They are defined by the four pyrrole NHs of the calix[4]pyrrole unit and the four inwardly directed α-protons of the coordinated pyridyl groups. The efficient assembly of the Pd(ii)-cage requires the inclusion of mono- and ditopic pyridyl N-oxide and aliphatic formamide guests. The monotopic guests only partially fill the cage's cavity and require the co-inclusion of a water molecule that is likely hydrogen-bonded to the endohedral α-pyridyl protons. The ditopic guests are able to completely fill the cage's cavity and complement both binding sites. We observed high conformational selectivity in the inclusion of the isomers of α,ω-bis-formamides. We briefly investigate the uptake and release mechanism/kinetics of selected polar guests by the Pd(ii)-cage using pair-wise competition experiments. A tetra-cationic calix[4]pyrrole tetra-pyridyl ligand self-assembles into a water-soluble Pd(ii)-cage featuring two endohedral polar binding sites. The Pd(ii)-cage encapsulates pyridyl N-oxide and aliphatic formamide guests in water.![]()
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Affiliation(s)
- Qingqing Sun
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST) Av. Països Catalans 16 43007 Tarragona Spain .,Universitat Rovira i Virgili (URV), Departament de Química Analítica i Química Orgánica c/Marcel·lí Domingo 1 43007 Tarragona Spain
| | - Luis Escobar
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST) Av. Països Catalans 16 43007 Tarragona Spain .,Universitat Rovira i Virgili (URV), Departament de Química Analítica i Química Orgánica c/Marcel·lí Domingo 1 43007 Tarragona Spain
| | - Jorn de Jong
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST) Av. Països Catalans 16 43007 Tarragona Spain
| | - Pablo Ballester
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST) Av. Països Catalans 16 43007 Tarragona Spain .,ICREA Passeig Lluís Companys 23 08010 Barcelona Spain
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Zhiquan L, Polen S, Hadad CM, RajanBabu TV, Badjić JD. Russian Nesting Doll Complexes of Molecular Baskets and Zinc Containing TPA Ligands. J Am Chem Soc 2016; 138:8253-8. [PMID: 27305044 DOI: 10.1021/jacs.6b04436] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Lei Zhiquan
- Department of Chemistry and
Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Shane Polen
- Department of Chemistry and
Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Christopher M. Hadad
- Department of Chemistry and
Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - T. V. RajanBabu
- Department of Chemistry and
Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Jovica D. Badjić
- Department of Chemistry and
Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
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Abstract
In this review, we describe the construction of gated molecular baskets, discuss their mechanism of action in regulating the exchange of guests and illustrate the potential of these concave hosts to act as catalysts for controlling chemical reactions. Importantly, a number of computational and experimental studies have suggested that gated baskets ought to unfold their gates at the rim for permitting the passage of guests to/from their inner space. These dynamic hosts are therefore offered as useful models for investigating the process of gating in artificial systems. Furthermore, gated baskets should permit examining the benefit of controlling the rate by which reactants access a gated catalyst for promoting chemical reactions occurring in its confined space.
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Affiliation(s)
- Keith Hermann
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, OH 43210, USA.
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Mettry M, Moehlig MP, Hooley RJ. Synthesis, Guest Binding, and Metal Coordination of Functionalized Self-Folding Deep Cavitands. Org Lett 2015; 17:1497-500. [DOI: 10.1021/acs.orglett.5b00383] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Magi Mettry
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - Melissa P. Moehlig
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - Richard J. Hooley
- Department of Chemistry, University of California, Riverside, California 92521, United States
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Ruan Y, Dalkiliç E, Peterson PW, Pandit A, Dastan A, Brown JD, Polen SM, Hadad CM, Badjić JD. Trapping of Organophosphorus Chemical Nerve Agents in Water with Amino Acid Functionalized Baskets. Chemistry 2014; 20:4251-6. [DOI: 10.1002/chem.201304779] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2013] [Indexed: 11/06/2022]
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Ruan Y, Peterson PW, Hadad CM, Badjić JD. On the encapsulation of hydrocarbon components of natural gas within molecular baskets in water. The role of C–H⋯π interactions and the host's conformational dynamics in the process of encapsulation. Chem Commun (Camb) 2014; 50:9086-9. [DOI: 10.1039/c4cc04107k] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Molecular baskets encapsulate hydrocarbon components of natural gas by forming C–H⋯π contacts and adjusting the size of their cup-shaped platform.
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Affiliation(s)
- Y. Ruan
- Department of Chemistry and Biochemistry
- Columbus, USA
| | | | - C. M. Hadad
- Department of Chemistry and Biochemistry
- Columbus, USA
| | - J. D. Badjić
- Department of Chemistry and Biochemistry
- Columbus, USA
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Hermann K, Sardini S, Ruan Y, Yoder RJ, Chakraborty M, Vyas S, Hadad CM, Badjić JD. Method for the Preparation of Derivatives of Heptiptycene: Toward Dual-Cavity Baskets. J Org Chem 2013; 78:2984-91. [PMID: 23445206 DOI: 10.1021/jo3027998] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Keith Hermann
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus,
Ohio 43210, United States
| | - Stephen Sardini
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus,
Ohio 43210, United States
| | - Yian Ruan
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus,
Ohio 43210, United States
| | - Ryan J. Yoder
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus,
Ohio 43210, United States
| | - Mrinal Chakraborty
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus,
Ohio 43210, United States
| | - Shubham Vyas
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus,
Ohio 43210, United States
| | - Christopher M. Hadad
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus,
Ohio 43210, United States
| | - Jovica D. Badjić
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus,
Ohio 43210, United States
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Wang BY, Stojanović S, Turner DA, Young TL, Hadad CM, Badjić JD. The entrapment of chiral guests with gated baskets: can a kinetic discrimination of enantiomers be governed through gating? Chemistry 2013; 19:4767-75. [PMID: 23436252 DOI: 10.1002/chem.201204344] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2012] [Indexed: 11/09/2022]
Abstract
The capacity of gated hosts for controlling a kinetic discrimination between stereoisomers is yet to be understood. To conduct corresponding studies, however, one needs to develop chiral, but modular and gated hosts. Accordingly, we used computational (RI-BP86/TZVP//RI-BP86/SV(P)) and experimental (NMR/CD/UV/Vis spectroscopy) methods to examine the transfer of chirality in gated baskets. We found that placing stereocenters of the same kind at the rim (R(1) =CH3, so-called bottom) and/or top amide positions (R(2) =sec-butyl) would direct the helical arrangement of the gates into a P or M propeller-like orientation. With the assistance of (1)H NMR spectroscopy, we quantified the intrinsic (thermodynamic) and constrictive (kinetic) binding affinities of (R)- and (S)-1,2-dibromopropane 5 toward baskets (S3b/P)-2, (S3t/M)-3, and (S3bt/P)-4. Interestingly, each basket has a low ( ≤1.3 kcal mol(-1)), but comparable (de<10%) affinity for entrapping enantiomeric (R/S)-5. In terms of the kinetics, basket (S3b/P)-2, with a set of S stereocenters at the bottom and P arrangement of the gates, would capture (R)-5 at a faster rate (kin(R)/kin(S) =2.0±0.2). Basket (S3t/M)-3, with a set of S centers at the top and M arrangement of the gates, however, trapped (S)-5 at a faster rate (kin(R)/kin(S) =0.30±0.05). In light of these findings, basket (S3bt/P)-4, with a set of S stereocenters installed at both top and bottom sites along with a P disposition of the gates, was found to have a lower ability to differentiate between enantiomeric (R/S)-5 (kin(R)/kin(S) =0.8). Evidently, the two sets of stereocenters in this "hybrid" host acted concurrently, each with the opposite effect on the entrapment kinetics. Gated baskets are hereby established to be a prototype for quantifying the kinetic discrimination of enantiomers through gating and elucidating the electronic/steric effects on the process.
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Affiliation(s)
- Bao-Yu Wang
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, OH, USA
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Rueda-Zubiaurre A, Herrero-García N, del Rosario Torres M, Fernández I, Osío Barcina J. Rational Design of a Nonbasic Molecular Receptor for Selective NH4+/K+Complexation in the Gas Phase. Chemistry 2012; 18:16884-9. [DOI: 10.1002/chem.201201642] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Revised: 09/16/2012] [Indexed: 11/08/2022]
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13
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Stojanović S, Turner DA, Share AI, Flood AH, Hadad CM, Badjić JD. A stereodynamic and redox-switchable encapsulation-complex containing a copper ion held by a tris-quinolinyl basket. Chem Commun (Camb) 2012; 48:4429-31. [DOI: 10.1039/c2cc30339f] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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