Multicolor Tuning of Perylene Diimides Dyes for Targeted Organelle Imaging In Vivo

The adjustment of the emission wavelengths and cell permeability of the perylene diimides (PDI) for multicolor cell imaging is a great challenge. Herein, based on a bay-region substituent engineering strategy, multicolor perylene diimides (MCPDI) were rationally designed and synthesized by introducing azetidine substituents on the bay region of PDIs. With the fine-tuned electron-donating ability of the azetidine substituents, these MCPDI showed high brightness, orange, red, and near infrared (NIR) fluorescence along with Stokes shifts increasing from 35 to 110 nm. Interestingly, azetidine substituents distorted to the plane of the MCPDI dyes, and the twist angle of monosubstituted MCPDI was larger than that of disubstituted MCPDI, which might efficiently decrease their π-π stacking. Moreover, all of these MCPDI dyes were cell-permeable and selectively stained various organelles for multicolor imaging of multiple organelles in living cells. Two-color imaging of lipid droplets (LDs) and other organelles stained with MCPDI dyes was performed to reveal the interaction between the LDs and other organelles in living cells. Furthermore, a NIR-emitting MCPDI dye with a mitochondria-targeted characteristic was successfully applied for tumor-specific imaging. The facile synthesis, excellent stability, high brightness, tunable fluorescence emission, and Stokes shifts make these MCPDI promising fluorescent probes for biological applications.

Self-Assembly of Amphiphilic PDI and NDI Derivatives with Opposite Thermoresponsive Fluorescent Behaviors in Aqueous Solution

This work presents a study of the thermally induced aggregation of perylene diimide (PDI) and naphthalene diimide (NDI) derivatives modified with oligo ethylene glycol (OEG) chains in aqueous solution. Water-soluble and flexible OEG side chains were introduced into the π-core of glutamate-modified NDI and PDI structures, and the aggregation process was modulated by heating or cooling in water. Interestingly, a rare opposite temperature response of fluorescent behavior from the two amphiphilic chromophores was revealed, in which the PDI exhibited fluorescent enhancement, while fluorescent quenching upon temperature increase was observed from the NDI assembly. The mechanism of thermally induced aggregation is clearly explained by studies with various spectroscopic techniques including UV-visible, fluorescence, 1H NMR, 2D NMR spectroscopy, and SEM observation as well as control experiments operated in DMSO solution. It is found that although similar J-aggregates were formed by both amphiphilic chromophores in aqueous solution, the temperature response of the aggregates to temperature was opposite. The degree of PDI aggregation decreased, while that of NDI increased upon temperature rising. This research paves a valuable way for understanding the complicated supramolecular behaviors of amphiphilic chromophores.

Photostable fluorescent probes based on multifunctional group substituted naphthalimide dyes for imaging of lipid droplets in live cells

We designed and synthesized multifunctional group substituted naphthalimide (MFGNI) dyes by introducing glycine ethyl ester and azetidine on 1,8-naphthalimide. With different azetidine substituents, the emission of the MFGNI dyes was shifted from blue to green. These MFGNI dyes exhibited high photoluminescence quantum yields (61% to 85%) and large Stokes shifts (67 nm). The amides and hydroxyl groups improved the photostability of the MFGNI dyes. Due to the small molecular weight and lipophilic properties, these MFGNI dyes specifically stained lipid droplets in living cells.

Fluorescent probes based on multifunctional encapsulated perylene diimide dyes for imaging of lipid droplets in live cells

A multifunctional encapsulation strategy confers perylene diimide dyes with high brightness, live-cell permeability, excellent anti-oxidation and lipid droplet-specific staining ability.

Flapping Peryleneimide as a Fluorogenic Dye with High Photostability and Strong Visible-Light Absorption

Flapping fluorophores (FLAP) with a flexible 8π ring are rapidly gaining attention as a versatile photofunctional system. Here we report a highly photostable "flapping peryleneimide" with an unprecedented fluorogenic mechanism based on a bent-to-planar conformational change in the S₁ excited state. The S₁ planarization induces an electronic configurational switch, almost quenching the inherent fluorescence (FL) of the peryleneimide moieties. However, the FL quantum yield is remarkably improved with a prolonged lifetime upon a slight environmental change. This fluorogenic function is realized by sensitive π-conjugation design, as a more π-expanded analogue does not show the planarization dynamics. With strong visible-light absorption, the FL lifetime response synchronized with the flexible flapping motion is useful for the latest optical techniques such as FL lifetime imaging microscopy (FLIM).

Fluorescent detection of HCl in halogenated solvents via photoinduced electron transfer: towards efficient gamma radiation detection

A series of perylene tetracarboxylic diimides (PDIs) fluorescent molecules are reported to detect the concentration of HCl in non-polar CHCl₃ solution. The PET-based fluorescent molecules can eventually be used to identify the intensity of γ-rays.

Synthesis of unsymmetric perylenediimide dye molecule and its photochemical properties on lipid membrane

Optical manipulation of cellular function is one of the important targets in chemical biology and medicine. To achieve manipulation of cellular function using small molecules, photochemical reaction, such as photo-isomerization and photo-induced electron transfer, is one of the most promising reactions. Especially, photo-induced electron transfer process may be the crucial for their further development of photo-functional agents in living cells. However, such molecules, which enable the modification of cellular function, are limited and the further development is necessary. Herein, we synthesized a novel unsymmetric perylenediimide dye and investigated the cellular staining upon the addition in the cell culture medium. Furthermore, we observed the fluorescence quenching upon the addition of ascorbic acid as electron donor and report the preliminary results to manipulate Ca²⁺ concentration in living cell line upon 488-nm light photoirradiation.

A new perylene-based fluorescent pH chemosensor for strongly acidic condition

A highly selective and sensitive pH chemosensor N,N-bis[(2-thiophene)-ethyl]-3,4,9,10-perylene tetracarboxylic diimide (TEPTD) was designed and synthesized through Schiff-base condensation reaction. It exhibited large Stokes shifts, good water solubility, excellent selectivity and outstanding photo-stability. The pK_a of the probe was 3.0, which indicated that it could be used in highly acid conditions. With the addition of H⁺, the fluorescence intensity increased gradually. The sensing mechanisms involved photo-induced electron transfer, protonation and deprotonation, which were confirmed by ¹H NMR titration experiment with trifluoroacetic acid. The probe can be used as a convenient probe to distinguish acidic from neutral or alkaline solutions by "naked-eye".

Coordinating Self-Assembly of Copper Perylenetetracarboxylate Nanorods: Selectively Lighting up Normal Cells around Cancerous Ones for Better Cancer Diagnosis

Specific imaging of cancer cells has been well-accepted in cancer diagnosis although it cannot precisely mark the boundary between the normal and cancerous cells and report their mutual influence. We report a nanorod fluorescent probe of copper perylenetetracarbonate (PTC-Cu) that can specifically light up normal cells. In combination with cancer cell imaging, the cocultured normal and cancer cells can be lit up with different colors, offering a clear contrast between the normal and cancer cells when they coexist. Because cancerous cells are only 20-30% in cancer area, this provides a possibility to visibly detect the mutual influence between the cancer and normal cells during therapy. We expect this method is beneficial to better cancer diagnosis and therapy.

A supramolecular red to near-infrared fluorescent probe for the detection of drugs in urine

A host–guest complex based on a newly designed and synthesized cationic perylene dye and cucurbit[8]uril exhibits red-NIR emission, high affinity and stability, and large Stokes shift. It can serve as a red-NIR fluorescent displacement probe for the detection of drugs in urine.

Solvatochromism in perylene diimides; experiment and theory

We report an experimental and computational investigation into the solvatochromism of a perylene diimide derivative. The alkyl swallowtail substituents allowed solubility in many solvents of widely differing polarity, with a complicated resultant behaviour, illustrating both negative and positive solvatochromism as a function of dielectric constant. Luminescence quantum yield and optical absorption linewidth displayed an inverse correlation, indicating varying degrees of intermolecular aggregation, and a remarkably similar trend was found between the peak absorption wavelength and the solvent boiling point, illustrating the dependency of aggregation on the solvent interactions. These outline trends may be parameterised by an empirically derived dimensionless quantity, as a tool to be used in more sophisticated future models of solvatochromism in small molecule chromophores.

Relationship between Side-Chain Polarity and the Self-Assembly Characteristics of Perylene Diimide Derivatives in Aqueous Solution

Perylene-3,4,9,10-tetracarboxylic acid diimides (PDIs) have recently gained considerable interest for water-based biosensing applications. PDIs have been studied intensively in the bulk state, but their physical properties in aqueous solution in interplay with side-chain polarity are, however, poorly understood. Therefore, three perylene diimide based derivatives were synthesized to study the relationship between side-chain polarity and their self-assembly characteristics in water. The polarity of the side chains was found to dictate the size and morphology of the formed aggregates. Side-chain polarity rendered the self-assembly and photophysical properties of the PDIs-both important for imminent water-based applications-and these were revealed to be especially responsive to changes in solvent composition.

Near-infrared probes based on fluorinated Si-rhodamine for live cell imaging

Si-rhodamine probe with a trifluoromethyl group on the 2-position of the pendant phenyl ring retains high brightness and excellent stability in a harsh physiological environment.

Synthesis, Photophysical, and Biological Evaluation of Sulfated Polyglycerol Dendronized Perylenebisimides (PBIs)--A Promising Platform for Anti-Inflammatory Theranostic Agents?

A set of four water-soluble perylene bisimides (PBI) based on sulfated polyglycerol (PGS) dendrons were developed, their photophysical properties determined via UV/vis and fluorescence spectroscopy, and their performance as possible anti-inflammatory agents evaluated via biological in vitro studies. It could be shown that in contrast to charge neutral PG-PBIs the introduction of the additional electrostatic repulsion forces leads to a decrease in the dendron generation necessary for aggregation suppression, allowing the preparation of PBIs with fluorescence quantum yields of >95% with a considerable decreased synthetic effort. Furthermore, the values determined for L-selectin binding down to the nanomolar range, their limited impact on blood coagulation, and their minor activation of the complement system renders these systems ideal for anti-inflammatory purposes.

Highly fluorescent cucurbit[8]uril–perylenemonoimide host–guest complexes as efficient fluorescent probes for N-terminal phenylalanine

We have developed host–guest fluorescent complexes based on cucurbit[8]uril and a perylenemonoimide for selective and sensitive detection of N-terminal phenylalanine peptides.

Cell membrane permeable fluorescent perylene bisimide derivatives for cell lysosome imaging

The cellular uptake of Lyso-APBIprobes is improved by PEG chains, and the double morpholine moieties make Lyso-APBI probes have higher acid activation ratio and better cell lysosome specificity.

pH-Sensitive perylene tetra-(alkoxycarbonyl) probes for live cell imaging

A novel perylene pH probe for imaging of living cells in neutral to weak basic pH changes.

Water-soluble perylenediimides: design concepts and biological applications

Water-soluble perylenediimides (PDIs) with high fluorescence intensity, photostability and biocompatibility have been successfully prepared and applied in the biological field.

Formation of An Ionic PTCA-β-CDNH2 Complex and Its Application for Phenol Sensing in Aqueous Phase

On the basis of proton transfer in aqueous phase, we prepared a water-soluble and highly fluorescent ionic complex of 3,4,9,10-perylene tetracarboxylic acid (PTCA) and 6-deoxy-6-amino-β-CD (β-CDNH2) and studied its fluorescence behavior. It was found that the fluorescence emission of the complex is sensitive and selective to the presence of trace amount of toxic phenolic compounds, in particular phenol, which is crucial for water quality control. The detection limit (DL) of the method to the analyte is ~0.03 μM, a lowest value reported in literatures for similar techniques. Interestingly, the detection at an unprecedented subnanogram (DL, ~0.12 ng/cm(2)) level can also be conducted in a visualized manner, which may provide a simple and low-cost protocol for on-site and real-time detection of the analyte. Moreover, the complex is humidity sensitive in dry state, and its color changes from bright yellow to bright green when exposed to wet vapor. Unlike other PTCA bisimide derivatives, preparation of the ionic complex of PTCA/β-CDNH2 is simple and avoids complicated synthetic burden. Furthermore, introduction of methanol into the aqueous solution of the complex resulted in aggregation as indicated by solution color change and proved by transmission electron microscopy and dynamic light scattering studies, which explains why the compound in dry state is sensitive to the presence of water and water vapor. X-ray diffraction, UV-vis, and fluorescence studies uncovered the H-packing nature of the structure of the aggregate.

Trypsin-inspired poly(urethane-urea)s based on poly-lysine oligomer segment

A new kind of biodegradable poly(urethane-urea)s based on poly-lysine oligomer used as the soft segment was synthesized and characterized. In vitro degradation behavior of poly (urethane-urea)s was investigated, and was assessed by (1)H NMR and mass loss. The results indicated that the peptide bonds in poly(urethane-urea)s were effectively cleaved in simulated pancreatic juice containing trypsin, while those in buffer solution without trypsin remained unaffected. The degradability was obviously improved by introducing poly-lysine oligomer into the main chain of poly(urethane-urea)s. The results of cells viability test indicated that the poly (urethane-urea)s showed a good biocompatibility on endothelial cells. The thermostability and hydrophilicity of poly(urethane-urea)s increased with increase in poly-lysine oligomer content.

pH responding reversible supramolecular self-assembly of water-soluble amino-imidazole-armed perylene diimide dye for biological applications

A water-soluble amino-imidazole-armed perylene diimide dye exhibits reversible supramolecular structure and fluorescence emission conversion upon external pH-stimulation.

A membrane permeable fluorescent Ca2+ probe based on bis-BODIPY with branched PEG

The cellular uptake of MPFCP-2 is improved by the PEG encapsulation method, and then MPFCP-2 could pass through the cell membrane by itself, and monitor the changes of the intracellular Ca²⁺ signal.

Perylene-cored star-shaped polycations for fluorescent gene vectors and bioimaging

Two star polycations, poly(2-aminoethyl methacrylate) (PAEMA, P1) and poly(2-(dimethylamino)ethyl methacrylate) (PDMAEMA, P2), have been synthesized with perylene diimide (PDI) as the central fluorophore. (1)H NMR and (13)C NMR are used to confirm the successful synthesis of a macromolecular initiator. Using ATRP strategy, P1 and P2 are obtained with narrow molecular weight distribution. The star polymers have good fluorescence properties in aqueous solution, which provides fluorescent tracing and imaging during gene delivery. Both P1 and P2 can efficiently condense DNA into stable nanoparticles. Transfection studies demonstrate that P1 and P2 deliver DNA into live cells with higher efficiency and lower cytotoxicity than polyethylenimine (PEI, 25 kDa). P2 shows higher capacity for gene delivery than P1 due to its better buffering and faster rate of cellular internalization.

Chromophoric and dendritic phosphoramidites enable construction of functional dendrimers with exceptional brightness and water solubility

The fluorescence brightness of a molecular probe determines whether it can be effectively measured and its water solubility dictates if it can be applied in real-world biological systems. However, molecules brighter than the most efficient fluorescent dyes or particles brighter than quantum dots are hard to come by, especially when they must also be soluble in water. In this report, chromophoric phosphoramidites are used in a solid-state synthesis to construct functional dendrimers. When highly twisted chromophores are chosen and the proper spacers and dendrons are introduced, the resultant dendrimers emit exceptionally bright fluorescence. Chromophores, spacers, and dendrons are stitched together by efficient phosphoramidite reagents, which afford high-yield water-soluble phosphodiester linkages after deprotection. The resulting water-soluble dendrimers are exceptionally bright.

Grafting perylenes to ZnO nanoparticles

A new prototype of dendritic perylenes suitable for the chemical functionalization of inorganic nanoparticles was synthesized and characterized. The bay-functionalized perylene core of these molecular architectures was coupled to a catechol moiety, which serves as an anchor group for the functionalization of metal oxides, in particular ZnO. To increase the solubility of both the perylene and the targeted hybrid nanostructures, a Newkome-type dendron bearing nine positive charges was introduced. This charge was also employed to stabilize the nanoparticles and further protect them from Ostwald ripening through Coulombic repulsion. ZnO quantum dots with an average diameter of 5 nm were synthesized and functionalized with the perylene derivative. Successful functionalization was clearly demonstrated by dynamic light scattering, zeta-potential measurements, thermogravimetric analysis/MS, and UV/Vis and fluorescence spectroscopy. The generated particle dispersions were stable against agglomeration for more than eight weeks.