1
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John EA, Riel AMS, Wieske LHE, Ray D, Decato DA, Boller M, Takacs Z, Erdélyi M, Bryantsev VS, Berryman OB. Taming Molecular Folding: Anion-Templated Foldamers with Tunable Quaternary Structures. J Am Chem Soc 2024. [PMID: 38842125 DOI: 10.1021/jacs.3c14820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024]
Abstract
Higher-order foldamers represent a unique class of supramolecules at the forefront of molecular design. Herein we control quaternary folding using a novel approach that combines halogen bonding (XBing) and hydrogen bonding (HBing). We present the first anion-templated double helices induced by halogen bonds (XBs) and stabilized by "hydrogen bond enhanced halogen bonds" (HBeXBs). Our findings demonstrate that the number and orientation of hydrogen bond (HB) and XB donors significantly affect the quaternary structure and guest selectivity of two similar oligomers. This research offers new design elements to engineer foldamers and tailor their quaternary structure for specific guest binding.
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Affiliation(s)
- Eric A John
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
| | - Asia Marie S Riel
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
| | - Lianne H E Wieske
- Department of Chemistry─BMC, Organic Chemistry, Uppsala University, Husargatan 3, 752 37 Uppsala, Sweden
| | - Debmalya Ray
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Daniel A Decato
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
| | - Madeleine Boller
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
| | - Zoltan Takacs
- Swedish NMR Center, University of Gothenburg, Gothenburg SE-405 30, Sweden
| | - Máté Erdélyi
- Department of Chemistry─BMC, Organic Chemistry, Uppsala University, Husargatan 3, 752 37 Uppsala, Sweden
| | - Vyacheslav S Bryantsev
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Orion B Berryman
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
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2
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Halgreen L, Torres-Huerta A, Norvaisa K, De Leener G, Tumanov N, Wouters J, Bartik K, Valkenier H. A Semiflexible Tetrahydrazone Macrocycle for Binding of Pyrophosphate and Smaller Anions. J Org Chem 2024; 89:6853-6864. [PMID: 38661472 DOI: 10.1021/acs.joc.4c00235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Macrocyclization has proven to be a useful design strategy in the development of efficient anion receptors. In addition to the ring size, the overall preorganization due to structural rigidity is key. To explore this in the context of developing an efficient pyrophosphate receptor, three macrocycles featuring a 26-membered interior ring size and similar H-bonding motifs have been synthesized, and their anion binding ability has been investigated. Computational studies and nuclear magnetic resonance (NMR) data showed different degrees of preorganization as a result of differences in flexibility. The interaction of the three macrocycles with chloride, dihydrogen phosphate, and dihydrogen pyrophosphate was investigated in solution by NMR and ultraviolet-visible spectroscopy and in the solid state by X-ray crystallography. The tetrahydrazone-based macrocycle featuring intermediate flexibility exhibited the best affinity for all three anions investigated. Our results suggest that in addition to the proper preorganization of binding groups in a macrocycle a certain degree of flexibility is also required for an optimal affinity with the target guest.
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Affiliation(s)
- Lau Halgreen
- Université libre de Bruxelles (ULB), Engineering of Molecular NanoSystems, Ecole polytechnique de Bruxelles, Avenue F. D. Roosevelt 50, CP165/64, B-1050 Brussels, Belgium
| | - Aaron Torres-Huerta
- Université libre de Bruxelles (ULB), Engineering of Molecular NanoSystems, Ecole polytechnique de Bruxelles, Avenue F. D. Roosevelt 50, CP165/64, B-1050 Brussels, Belgium
| | - Karolis Norvaisa
- Université libre de Bruxelles (ULB), Engineering of Molecular NanoSystems, Ecole polytechnique de Bruxelles, Avenue F. D. Roosevelt 50, CP165/64, B-1050 Brussels, Belgium
| | - Gaël De Leener
- Centre d'Instrumentation en REsonance Magnétique (CIREM), Université libre de Bruxelles (ULB), Avenue F. D. Roosevelt 50, CP 160/08, B-1050 Brussels, Belgium
| | - Nikolay Tumanov
- Namur Institute of Structured Matter and Namur Research Institute for Life Sciences, Department of Chemistry, University of Namur, 61 rue de Bruxelles, B-5000 Namur, Belgium
| | - Johan Wouters
- Namur Institute of Structured Matter and Namur Research Institute for Life Sciences, Department of Chemistry, University of Namur, 61 rue de Bruxelles, B-5000 Namur, Belgium
| | - Kristin Bartik
- Université libre de Bruxelles (ULB), Engineering of Molecular NanoSystems, Ecole polytechnique de Bruxelles, Avenue F. D. Roosevelt 50, CP165/64, B-1050 Brussels, Belgium
| | - Hennie Valkenier
- Université libre de Bruxelles (ULB), Engineering of Molecular NanoSystems, Ecole polytechnique de Bruxelles, Avenue F. D. Roosevelt 50, CP165/64, B-1050 Brussels, Belgium
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3
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Bhattacharjee N, Gao X, Nathani A, Dobscha JR, Pink M, Ito T, Flood AH. Solvent Acts as the Referee in a Match-Up Between Charged and Preorganized Receptors. Chemistry 2023; 29:e202302339. [PMID: 37615829 DOI: 10.1002/chem.202302339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 08/21/2023] [Accepted: 08/22/2023] [Indexed: 08/25/2023]
Abstract
The prevalence of anion-cation contacts in biomolecular recognition under aqueous conditions suggests that ionic interactions should dominate the binding of anions in solvents across both high and low polarities. Investigations of this idea using titrations in low polarity solvents are impaired by interferences from ion pairing that prevent a clear picture of binding. To address this limitation and test the impact of ion-ion interactions across multiple solvents, we quantified chloride binding to a cationic receptor after accounting for ion pairing. In these studies, we created a chelate receptor using aryl-triazole CH donors and a quinolinium unit that directs its cationic methyl inside the binding pocket. In low-polarity dichloromethane, the 1 : 1 complex (log K1 : 1 ~ 7.3) is more stable than neutral chelates, but fortuitously comparable to a preorganized macrocycle (log K1 : 1 ~ 6.9). Polar acetonitrile and DMSO diminish stabilities of the charged receptor (log K1 : 1 ~ 3.7 and 1.9) but surprisingly 100-fold more than the macrocycle. While both receptors lose stability by dielectric screening of electrostatic stability, the cationic receptor also pays additional costs of organization. Thus even though the charged receptor has stronger binding in apolar solvents, the uncharged receptor has more anion affinity in polar solvents.
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Affiliation(s)
- Nabarupa Bhattacharjee
- Department of Chemistry, Indiana University Bloomington, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA
| | - Xinfeng Gao
- Department of Chemistry, Indiana University Bloomington, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA
| | - Akash Nathani
- Department of Chemistry, Kansas State University, 213 CBC Building, 1212 Mid-campus Dr North, Manhattan, KS 66506, USA
| | - James R Dobscha
- Department of Chemistry, Indiana University Bloomington, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA
| | - Maren Pink
- Department of Chemistry, Indiana University Bloomington, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA
| | - Takashi Ito
- Department of Chemistry, Kansas State University, 213 CBC Building, 1212 Mid-campus Dr North, Manhattan, KS 66506, USA
| | - Amar H Flood
- Department of Chemistry, Indiana University Bloomington, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA
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4
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Parks FC, Sheetz EG, Stutsman SR, Lutolli A, Debnath S, Raghavachari K, Flood AH. Revealing the Hidden Costs of Organization in Host-Guest Chemistry Using Chloride-Binding Foldamers and Their Solvent Dependence. J Am Chem Soc 2022; 144:1274-1287. [PMID: 35015538 DOI: 10.1021/jacs.1c10758] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Preorganization is a key concept in supramolecular chemistry. Preorganized receptors enhance binding by minimizing the organization costs associated with adopting the conformation needed to orient the binding sites toward the guest. Conversely, poorly organized receptors show affinities below what is possible based on the potential of their specific binding interactions. Despite the fact that the organization energy is paid each time like a tax, its value has never been measured directly, though many compounds have been developed to measure its effects. We present a method to quantify the hidden costs of receptor organization by independently measuring the contribution it makes to chloride complexation by a flexible foldameric receptor. This method uses folding energy to approximate organization energy and relies on measurement of the coil-helix equilibrium as a function of solvent. We also rely on the finding, established with rigid receptors, that affinity is inversely related to the solvent dielectric and expect the same for the foldamer's helically organized state. Increasing solvent polarity across nine dichloromethane-acetonitrile mixtures we see an unusual V-shape in affinity (decrease then increase). Quantitatively, this shape arises from weakened hydrogen-bonding interactions with solvent polarity followed by solvent-driven folding into an organized helix. We confirm that dielectric screening impacts the stability of host-guest complexes of flexible foldamers just like rigid receptors. These results experimentally verify the canonical model of binding (affinity depends on the sum of organization and noncovalent interactions). The picture of how solvent impacts complex stability and conformational organization thereby helps lay the groundwork for de novo receptor design.
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Affiliation(s)
- Fred C Parks
- Department of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Edward G Sheetz
- Department of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Sydney R Stutsman
- Department of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Alketa Lutolli
- Department of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Sibali Debnath
- Department of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Krishnan Raghavachari
- Department of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Amar H Flood
- Department of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
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5
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Rajamalli P, Rizzi F, Li W, Jinks MA, Gupta AK, Laidlaw BA, Samuel IDW, Penfold TJ, Goldup SM, Zysman‐Colman E. Using the Mechanical Bond to Tune the Performance of a Thermally Activated Delayed Fluorescence Emitter*. Angew Chem Int Ed Engl 2021; 60:12066-12073. [PMID: 33666324 PMCID: PMC8251797 DOI: 10.1002/anie.202101870] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Indexed: 12/12/2022]
Abstract
We report the characterization of rotaxanes based on a carbazole-benzophenone thermally activated delayed fluorescence luminophore. We find that the mechanical bond leads to an improvement in key photophysical properties of the emitter, notably an increase in photoluminescence quantum yield and a decrease in the energy difference between singlet and triplet states, as well as fine tuning of the emission wavelength, a feat that is difficult to achieve when using covalently bound substituents. Computational simulations, supported by X-ray crystallography, suggest that this tuning of properties occurs due to weak interactions between the axle and the macrocycle that are enforced by the mechanical bond. This work highlights the benefits of using the mechanical bond to refine existing luminophores, providing a new avenue for emitter optimization that can ultimately increase the performance of these molecules.
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Affiliation(s)
- Pachaiyappan Rajamalli
- Organic Semiconductor CentreEaStCHEM School of ChemistryUniversity of St AndrewsSt AndrewsFifeKY16 9STUK
- Materials Research CentreIndian Institute of ScienceBangalore560012India
| | - Federica Rizzi
- ChemistryUniversity of SouthamptonHighfieldSouthamptonSO17 1BJUK
| | - Wenbo Li
- Organic Semiconductor CentreSUPA School of Physics and AstronomyUniversity of St AndrewsSt AndrewsFifeKY16 9SSUK
| | - Michael A. Jinks
- ChemistryUniversity of SouthamptonHighfieldSouthamptonSO17 1BJUK
| | - Abhishek Kumar Gupta
- Organic Semiconductor CentreEaStCHEM School of ChemistryUniversity of St AndrewsSt AndrewsFifeKY16 9STUK
- Organic Semiconductor CentreSUPA School of Physics and AstronomyUniversity of St AndrewsSt AndrewsFifeKY16 9SSUK
| | - Beth A. Laidlaw
- Chemistry, School of Natural and Environmental SciencesNewcastle UniversityNewcastle upon TyneNE1 7RUUK
| | - Ifor D. W. Samuel
- Organic Semiconductor CentreSUPA School of Physics and AstronomyUniversity of St AndrewsSt AndrewsFifeKY16 9SSUK
| | - Thomas J. Penfold
- Chemistry, School of Natural and Environmental SciencesNewcastle UniversityNewcastle upon TyneNE1 7RUUK
| | | | - Eli Zysman‐Colman
- Organic Semiconductor CentreEaStCHEM School of ChemistryUniversity of St AndrewsSt AndrewsFifeKY16 9STUK
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6
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Rajamalli P, Rizzi F, Li W, Jinks MA, Gupta AK, Laidlaw BA, Samuel IDW, Penfold TJ, Goldup SM, Zysman‐Colman E. Using the Mechanical Bond to Tune the Performance of a Thermally Activated Delayed Fluorescence Emitter**. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202101870] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Pachaiyappan Rajamalli
- Organic Semiconductor Centre EaStCHEM School of Chemistry University of St Andrews St Andrews Fife KY16 9ST UK
- Materials Research Centre Indian Institute of Science Bangalore 560012 India
| | - Federica Rizzi
- Chemistry University of Southampton Highfield Southampton SO17 1BJ UK
| | - Wenbo Li
- Organic Semiconductor Centre SUPA School of Physics and Astronomy University of St Andrews St Andrews Fife KY16 9SS UK
| | - Michael A. Jinks
- Chemistry University of Southampton Highfield Southampton SO17 1BJ UK
| | - Abhishek Kumar Gupta
- Organic Semiconductor Centre EaStCHEM School of Chemistry University of St Andrews St Andrews Fife KY16 9ST UK
- Organic Semiconductor Centre SUPA School of Physics and Astronomy University of St Andrews St Andrews Fife KY16 9SS UK
| | - Beth A. Laidlaw
- Chemistry, School of Natural and Environmental Sciences Newcastle University Newcastle upon Tyne NE1 7RU UK
| | - Ifor D. W. Samuel
- Organic Semiconductor Centre SUPA School of Physics and Astronomy University of St Andrews St Andrews Fife KY16 9SS UK
| | - Thomas J. Penfold
- Chemistry, School of Natural and Environmental Sciences Newcastle University Newcastle upon Tyne NE1 7RU UK
| | - Stephen M. Goldup
- Chemistry University of Southampton Highfield Southampton SO17 1BJ UK
| | - Eli Zysman‐Colman
- Organic Semiconductor Centre EaStCHEM School of Chemistry University of St Andrews St Andrews Fife KY16 9ST UK
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7
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Beatty MA, Hof F. Host-guest binding in water, salty water, and biofluids: general lessons for synthetic, bio-targeted molecular recognition. Chem Soc Rev 2021; 50:4812-4832. [PMID: 33651047 DOI: 10.1039/d0cs00495b] [Citation(s) in RCA: 43] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Synthetic molecular recognition systems are increasingly being used to solve applied problems in the life sciences, and bio-targeted host-guest chemistry has rapidly arisen as a major field of fundamental research. This tutorial review presents a set of fundamental lessons on how host-guest molecular recognition can be programmed in water. The review uses informative examples of aqueous host-guest chemistry organized around generalizable themes and lessons, building towards lessons focused on molecular recognition in salty solutions and biological fluids. It includes selected examples of macrocyclic host systems that work well, as well as common pitfalls and how to avoid them. The review closes with a survey of the most important and inspirational recent advances, which involve host-guest chemistry in living cells and organisms.
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Affiliation(s)
- Meagan A Beatty
- Department of Chemistry, University of Victoria, 3800 Finnerty Rd, Victoria, BC, V8W 3V6 Canada.
| | - Fraser Hof
- Department of Chemistry, University of Victoria, 3800 Finnerty Rd, Victoria, BC, V8W 3V6 Canada.
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8
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Butzelaar AJ, Gauthier-Jaques M, Liu KL, Brunklaus G, Winter M, Theato P. The power of architecture – cage-shaped PEO and its application as a polymer electrolyte. Polym Chem 2021. [DOI: 10.1039/d1py00490e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
First reported gram-scale synthesis of a four-arm cage-shaped poly(ethylene oxide) polymer and its pioneering application as polymer electrolyte.
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Affiliation(s)
- Andreas Johannes Butzelaar
- Institute for Chemical Technology and Polymer Chemistry (ITCP)
- Karlsruhe Institute of Technology (KIT)
- 76131 Karlsruhe
- Germany
| | - Martin Gauthier-Jaques
- Soft Matter Synthesis Laboratory – Institute for Biological Interfaces III (IBG-3)
- Karlsruhe Institute of Technology (KIT)
- 76344 Eggenstein-Leopoldshafen
- Germany
| | - Kun Ling Liu
- IEK-12/Forschungszentrum Jülich GmbH
- Helmholtz-Institute Münster
- Münster
- Germany
| | - Gunther Brunklaus
- IEK-12/Forschungszentrum Jülich GmbH
- Helmholtz-Institute Münster
- Münster
- Germany
- MEET Battery Research Center/Institute of Physical Chemistry
| | - Martin Winter
- IEK-12/Forschungszentrum Jülich GmbH
- Helmholtz-Institute Münster
- Münster
- Germany
- MEET Battery Research Center/Institute of Physical Chemistry
| | - Patrick Theato
- Institute for Chemical Technology and Polymer Chemistry (ITCP)
- Karlsruhe Institute of Technology (KIT)
- 76131 Karlsruhe
- Germany
- Soft Matter Synthesis Laboratory – Institute for Biological Interfaces III (IBG-3)
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9
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Gauthier-Jaques M, Theato P. Synergy of Macrocycles and Macromolecular Topologies: An Efficient [3 4]Triazolophane-Based Synthesis of Cage-Shaped Polymers. ACS Macro Lett 2020; 9:700-705. [PMID: 35648557 DOI: 10.1021/acsmacrolett.0c00248] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The development of complex topologies such as macromolecular cages constitutes a fascinating aspect of polymer chemistry. In the present work, a novel strategy involving self-closing bifunctional end-groups, which under specific conditions, are allowed to assemble themselves into a predefined thermodynamically favored macrostructure, was designed to fulfill the topological conversion of star-shaped polymers to their respective cage-shaped polymers. A series of four different well-defined four-arm star-shaped poly(ε-caprolactone) polymers varying in molar masses were successfully synthesized, end-functionalized, and closed into cage-shaped polymers by formation of [34]triazolophane macrocycle units. The obtained cage-shaped polymers feature interesting properties that depend drastically on the chain length of the arms and seem to differ from previous reported polymer cages.
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Affiliation(s)
- Martin Gauthier-Jaques
- Soft Matter Synthesis Laboratory, Institute for Biological Interfaces 3 (IBG-3), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Patrick Theato
- Soft Matter Synthesis Laboratory, Institute for Biological Interfaces 3 (IBG-3), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- Institute for Chemical Technology and Polymer Chemistry (ITCP), Karlsruhe Institute of Technology (KIT), Engesserstraße 18, 76131 Karlsruhe, Germany
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10
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Abstract
Using anions to induce molecular structure is a rapidly growing area of dynamic and switchable supramolecular chemistry. The emphasis of this review is on helical anion foldamers in solution, and many of the beautiful complexes described herein are accentuated by their crystal structures. Anion foldamers are defined as single- or multistrand complexes-often helical-that incorporate one or more anions. The review begins by discussing foldamer structure and nomenclature and follows with discourse on the anions which are employed. Recent advances in functional foldamers that bind a single anion are examined, including: induced chirality, stimuli-responsive dynamics, fluorescence changes, organocatalysis, anion transport, and halogen bonding. The review then inspects multianion foldamers, and this section is organized by the number of strands within the foldamer-from single- to triple-strand foldamers. Finally, the review is punctuated by recent hydrogen- and halogen-bonding triple-strand anion foldamers.
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Affiliation(s)
- Eric A John
- Department of Chemistry and Biochemistry, University of Montana, 32 Campus Drive, Missoula, Montana 59812, United States
| | - Casey J Massena
- Department of Chemistry and Biochemistry, University of Montana, 32 Campus Drive, Missoula, Montana 59812, United States
| | - Orion B Berryman
- Department of Chemistry and Biochemistry, University of Montana, 32 Campus Drive, Missoula, Montana 59812, United States
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11
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Sandner A, Hüfner-Wulsdorf T, Heine A, Steinmetzer T, Klebe G. Strategies for Late-Stage Optimization: Profiling Thermodynamics by Preorganization and Salt Bridge Shielding. J Med Chem 2019; 62:9753-9771. [PMID: 31633354 DOI: 10.1021/acs.jmedchem.9b01196] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Structural fixation of a ligand in its bioactive conformation may, due to entropic reasons, improve affinity. We present a congeneric series of thrombin ligands with a variety of functional groups triggering preorganization prior to binding. Fixation in solution and complex formation have been characterized by crystallography, isothermal titration calorimetry (ITC), and molecular dynamics (MD) simulations. First, we show why these preorganizing modifications do not affect the overall binding mode and how key interactions are preserved. Next, we demonstrate how preorganization thermodynamics can be largely dominated by enthalpy rather than entropy because of the significant population of low-energy conformations. Furthermore, a salt bridge is shielded by actively reducing its surface exposure, thus leading to an enhanced enthalpic binding profile. Our results suggest that the consideration of the ligand solution ensemble by MD simulation is necessary to predict preorganizing modifications that enhance the binding behavior of already promising binders.
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Affiliation(s)
- Anna Sandner
- Institut für Pharmazeutische Chemie , Philipps-Universität Marburg , Marbacher Weg 6 , 35032 Marburg , Germany
| | - Tobias Hüfner-Wulsdorf
- Institut für Pharmazeutische Chemie , Philipps-Universität Marburg , Marbacher Weg 6 , 35032 Marburg , Germany
| | - Andreas Heine
- Institut für Pharmazeutische Chemie , Philipps-Universität Marburg , Marbacher Weg 6 , 35032 Marburg , Germany
| | - Torsten Steinmetzer
- Institut für Pharmazeutische Chemie , Philipps-Universität Marburg , Marbacher Weg 6 , 35032 Marburg , Germany
| | - Gerhard Klebe
- Institut für Pharmazeutische Chemie , Philipps-Universität Marburg , Marbacher Weg 6 , 35032 Marburg , Germany
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12
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Navarro-García E, Velasco MD, Zapata F, Bauzá A, Frontera A, Ramírez de Arellano C, Caballero A. Exploiting 1,4-naphthoquinone and 3-iodo-1,4-naphthoquinone motifs as anion binding sites by hydrogen or halogen-bonding interactions. Dalton Trans 2019; 48:11813-11821. [PMID: 31304497 DOI: 10.1039/c9dt02012h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
We describe here the utilization of 1,4-naphthoquinone and 3-iodo-1,4-naphthoquinone motifs as new anion binding sites by hydrogen- or halogen-bonding interactions, respectively. These binding sites have been integrated in bidentate ester based receptors. Emission experiments reveal that both receptors selectively recognize sulfate anions, which induced a remarkable increase of a new emission band attributed to the formation of π-stacking interactions between two 1,4-naphthoquinone units. Absorption spectroscopy and mass spectrometry indicate the disruption of the ester group of the 1,4-naphthoquinone based receptor in the presence of HP2O73-, H2PO4-, F-, AcO- and C6H5CO2- and in the halogenated receptor with HP2O73-, F- and AcO- anions, while the presence of sulfate anions showed the clasical complexation behaviour. The 1H-NMR experiment showed a slow exchange process of the receptors with their sulfate complexes. The binding mode of the receptors with sulfate has been studied by DFT calculations along with the Molecular Electrostatic Potential (MEP) surface computational tool that reveals those parts of the receptors which are more suitable for interacting with anions.
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Affiliation(s)
| | - María D Velasco
- Departamento de Química Orgánica, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain.
| | - Fabiola Zapata
- Departamento de Química Orgánica, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain.
| | - Antonio Bauzá
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa Km75, 07122 Palma de Mallorca, Baleares, Spain
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa Km75, 07122 Palma de Mallorca, Baleares, Spain
| | | | - Antonio Caballero
- Departamento de Química Orgánica, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain.
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13
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Boer SA, Foyle EM, Thomas CM, White NG. Anion coordination chemistry using O-H groups. Chem Soc Rev 2019; 48:2596-2614. [PMID: 30860210 DOI: 10.1039/c8cs00828k] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
This review covers significant advances in the use of O-H groups in anion coordination chemistry. The review focuses on the use of these groups in synthetic anion receptors, as well as more recent developments in transport, self-assembly and catalysis.
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Affiliation(s)
- Stephanie A Boer
- Research School of Chemistry, The Australian National University, Canberra, Australia.
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14
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Borissov A, Marques I, Lim JYC, Félix V, Smith MD, Beer PD. Anion Recognition in Water by Charge-Neutral Halogen and Chalcogen Bonding Foldamer Receptors. J Am Chem Soc 2019; 141:4119-4129. [PMID: 30730716 DOI: 10.1021/jacs.9b00148] [Citation(s) in RCA: 149] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A novel strategy for the recognition of anions in water using charge-neutral σ-hole halogen and chalcogen bonding acyclic hosts is demonstrated for the first time. Exploiting the intrinsic hydrophobicity of halogen and chalcogen bond donor atoms integrated into a foldamer structural molecular framework containing hydrophilic functionalities, a series of water-soluble receptors was constructed for an anion recognition investigation. Isothermal titration calorimetry (ITC) binding studies with a range of anions revealed the receptors to display very strong and selective binding of large, weakly hydrated anions such as I- and ReO4-. This is achieved through the formation of 2:1 host-guest stoichiometric complex assemblies, resulting in an encapsulated anion stabilized by cooperative, multidentate, convergent σ-hole donors, as shown by molecular dynamics simulations carried out in water. Importantly, the combination of multiple σ-hole-anion interactions and hydrophobic collapse results in I- affinities in water that exceed all known σ-hole receptors, including cationic systems (β2 up to 1.68 × 1011 M-2). Furthermore, the anion binding affinities and selectivity trends of the first example of an all-chalcogen bonding anion receptor in pure water are compared with halogen bonding and hydrogen bonding receptor analogues. These results further advance and establish halogen and chalcogen bond donor functions as new tools for overcoming the challenging goal of anion recognition in pure water.
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Affiliation(s)
- Arseni Borissov
- Chemistry Research Laboratory, Department of Chemistry , University of Oxford , Mansfield Road , Oxford OX1 3TA , U.K
| | - Igor Marques
- Department of Chemistry, CICECO - Aveiro Institute of Materials , University of Aveiro , 3810-193 Aveiro , Portugal
| | - Jason Y C Lim
- Chemistry Research Laboratory, Department of Chemistry , University of Oxford , Mansfield Road , Oxford OX1 3TA , U.K
| | - Vítor Félix
- Department of Chemistry, CICECO - Aveiro Institute of Materials , University of Aveiro , 3810-193 Aveiro , Portugal
| | - Martin D Smith
- Chemistry Research Laboratory, Department of Chemistry , University of Oxford , Mansfield Road , Oxford OX1 3TA , U.K
| | - Paul D Beer
- Chemistry Research Laboratory, Department of Chemistry , University of Oxford , Mansfield Road , Oxford OX1 3TA , U.K
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15
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Ferrand Y, Huc I. Designing Helical Molecular Capsules Based on Folded Aromatic Amide Oligomers. Acc Chem Res 2018; 51:970-977. [PMID: 29589916 DOI: 10.1021/acs.accounts.8b00075] [Citation(s) in RCA: 143] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The ab initio rational structure-based design of a synthetic molecular receptor for a given complex biomolecular guest remains an elusive objective, yet remarkable progress has been achieved in recent years. This Account deals with the use of folded artificial aromatic amide oligomers, also termed aromatic foldamers, inspired from biopolymer structures, for the design of helical molecular capsules that can recognize guest molecules, completely surround them, and isolate them from the solvent, thus giving rise to a sort of guest encapsulation associated with slow binding and release kinetics. The development of new amino acid, diacid, and diamine monomers, a main source of creativity in this field, progress in their assembly into ever longer oligoamide sequences, and the predictability of the folded structures due to their inherent rigidity and simple folding principles, allowed for the design and preparation of unimolecular and bimolecular capsule shapes. These capsules consist of molecular helices having a large diameter in the middle and a narrow diameter at both ends thus creating a cavity suitable for binding a guest molecule. The understanding of molecular recognition properties within these bioinspired containers has greatly progressed. Recognition of simple guests such as diols or amino-alcohols may thus be predicted, and hosts can be proposed for guests as complex as saccharides using first principle design. Taking advantage of the modular nature of oligomeric sequences, of their synthetic accessibility and of their propensity to grow into crystals suitable for X-ray crystallographic analysis, a structure-based iterative design methodology has been developed that eventually yielded exquisite guest selectivity, affinity, and diastereoselectivity. This methodology involves rational negative design steps during which changes in the foldamer capsule sequence are not intended to improve binding to the targeted guest but instead to exclude the binding of other guests while preserving key interactions with the target. Metal ions can also be introduced at the inner rim of foldamer capsules and eventually assist the binding of an organic guest. These results demonstrate the viability of an ab initio approach to abiotic receptor design based on aromatic foldamers. The dynamic of the capsules associated with their self-organized nature provides opportunities to not only tune guest binding and selectivity, but also guest capture and release kinetics as well as cavity size and shape. Controlled release thus emerges as a realistic objective. Recent progress thus opens up multiple perspectives for the development of tailored hosts, sensors, and carriers structurally and conceptually different from earlier generations of macrocyclic-based receptors or from supramolecular containers produced by self-assembly.
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Affiliation(s)
- Yann Ferrand
- Université
de Bordeaux, CNRS, Bordeaux Institut National Polytechnique, CBMN
(UMR 5248), Institut Européen de Chimie et Biologie, 2 Rue Escarpit, 33600 Pessac, France
| | - Ivan Huc
- Department Pharmazie, Ludwig-Maximilians-Universität, Butenandtstraße 5-13, D-81377 München, Germany
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16
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Huang Y, Cui G, Zhao Y, Wang H, Li Z, Dai S, Wang J. Preorganization and Cooperation for Highly Efficient and Reversible Capture of Low-Concentration CO 2 by Ionic Liquids. Angew Chem Int Ed Engl 2017; 56:13293-13297. [PMID: 28857376 DOI: 10.1002/anie.201706280] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2017] [Revised: 08/20/2017] [Indexed: 12/12/2022]
Abstract
A novel strategy based on the concept of preorganization and cooperation has been designed for a superior capacity to capture low-concentration CO2 by imide-based ionic liquids. By using this strategy, for the first time, an extremely high gravimetric CO2 capacity of up to 22 wt % (1.65 mol mol-1 ) and excellent reversibility (16 cycles) have been achieved from 10 vol. % of CO2 in N2 when using an ionic liquid having a preorganized anion. Through a combination of quantum-chemical calculations and spectroscopic investigations, it is suggested that cooperative interactions between CO2 and multiple active sites in the preorganized anion are the driving force for the superior CO2 capacity and excellent reversibility.
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Affiliation(s)
- Yanjie Huang
- Henan Key Laboratory of Green Chemistry, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Guokai Cui
- Henan Key Laboratory of Green Chemistry, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China.,Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Yuling Zhao
- Henan Key Laboratory of Green Chemistry, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Huiyong Wang
- Henan Key Laboratory of Green Chemistry, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Zhiyong Li
- Henan Key Laboratory of Green Chemistry, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
| | - Sheng Dai
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.,Department of Chemistry, University of Tennessee, Knoxville, TN, 37996, USA
| | - Jianji Wang
- Henan Key Laboratory of Green Chemistry, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan, 453007, China
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17
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Huang Y, Cui G, Zhao Y, Wang H, Li Z, Dai S, Wang J. Preorganization and Cooperation for Highly Efficient and Reversible Capture of Low-Concentration CO2
by Ionic Liquids. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201706280] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Yanjie Huang
- Henan Key Laboratory of Green Chemistry; Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals; Key Laboratory of Green Chemical Media and Reactions; Ministry of Education; School of Chemistry and Chemical Engineering; Henan Normal University; Xinxiang Henan 453007 China
| | - Guokai Cui
- Henan Key Laboratory of Green Chemistry; Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals; Key Laboratory of Green Chemical Media and Reactions; Ministry of Education; School of Chemistry and Chemical Engineering; Henan Normal University; Xinxiang Henan 453007 China
- Chemical Sciences Division; Oak Ridge National Laboratory; Oak Ridge TN 37831 USA
| | - Yuling Zhao
- Henan Key Laboratory of Green Chemistry; Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals; Key Laboratory of Green Chemical Media and Reactions; Ministry of Education; School of Chemistry and Chemical Engineering; Henan Normal University; Xinxiang Henan 453007 China
| | - Huiyong Wang
- Henan Key Laboratory of Green Chemistry; Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals; Key Laboratory of Green Chemical Media and Reactions; Ministry of Education; School of Chemistry and Chemical Engineering; Henan Normal University; Xinxiang Henan 453007 China
| | - Zhiyong Li
- Henan Key Laboratory of Green Chemistry; Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals; Key Laboratory of Green Chemical Media and Reactions; Ministry of Education; School of Chemistry and Chemical Engineering; Henan Normal University; Xinxiang Henan 453007 China
| | - Sheng Dai
- Chemical Sciences Division; Oak Ridge National Laboratory; Oak Ridge TN 37831 USA
- Department of Chemistry; University of Tennessee; Knoxville TN 37996 USA
| | - Jianji Wang
- Henan Key Laboratory of Green Chemistry; Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals; Key Laboratory of Green Chemical Media and Reactions; Ministry of Education; School of Chemistry and Chemical Engineering; Henan Normal University; Xinxiang Henan 453007 China
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18
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Li Y, Yang GH, Shen YY, Xue XS, Li X, Cheng JP. N-tert-Butyl Sulfinyl Squaramide Receptors for Anion Recognition through Assisted tert-Butyl C–H Hydrogen Bonding. J Org Chem 2017; 82:8662-8667. [DOI: 10.1021/acs.joc.7b01634] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Yao Li
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Guo-Hui Yang
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Ye-Ye Shen
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Xiao-Song Xue
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Xin Li
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
| | - Jin-Pei Cheng
- State Key Laboratory of Elemento-Organic
Chemistry, College of Chemistry, Collaborative Innovation Center of
Chemical Science and Engineering, Nankai University, Tianjin 300071, China
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19
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Lewis JEM, Winn J, Cera L, Goldup SM. Iterative Synthesis of Oligo[n]rotaxanes in Excellent Yield. J Am Chem Soc 2016; 138:16329-16336. [PMID: 27700073 DOI: 10.1021/jacs.6b08958] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
We present an operationally simple iterative coupling strategy for the synthesis of oligomeric homo- and hetero[n]rotaxanes with precise control over the position of each macrocycle. The exceptional yield of the AT-CuAAC reaction, combined with optimized conditions that allow the rapid synthesis of the target oligomers, opens the door to the study of precision-engineered oligomeric interlocked molecules.
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Affiliation(s)
- James E M Lewis
- Chemistry, University of Southampton , Highfield, Southampton SO17 1BJ, U.K
| | - Joby Winn
- School of Biological Sciences, Queen Mary University of London , London E1 4NS, U.K
| | - Luca Cera
- School of Biological Sciences, Queen Mary University of London , London E1 4NS, U.K
| | - Stephen M Goldup
- Chemistry, University of Southampton , Highfield, Southampton SO17 1BJ, U.K
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20
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Satapathy S, Prasad E. Charge Transfer Modulated Self-Assembly in Poly(aryl ether) Dendron Derivatives with Improved Stability and Transport Characteristics. ACS APPLIED MATERIALS & INTERFACES 2016; 8:26176-26189. [PMID: 27603727 DOI: 10.1021/acsami.6b09175] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Alteration of native gelation properties of anthracene and pyrene cored first generation poly(aryl ether) dendrons, G1-An and G1-Py, by introducing a common acceptor, 2,4,7-trinitro-9H-fluoren-9-one (TNF), results in forming charge transfer gels in long chain alcoholic solvents. This strategy leads to significant perturbation of optical and electronic properties within the gel matrix. Consequently, a noticeable increase of their electrical conductivities is observed, making these poly(aryl ether) dendron based gels potential candidates for organic electronics. While the dc-conductivity (σ) value for the native gel from G1-An is 2.8 × 10-4 S m-1, the value increased 3 times (σ = 8.7 × 10-4 S m-1) for its corresponding charge transfer gel. Further, the dc-conductivity for the native gel self-assembled from G1-Py dramatically enhanced by approximately an order of magnitude from 4.9 × 10-4 to 1.3 × 10-3 S m-1, under the influence of an acceptor. Apart from H-bonding and π···π interactions, charge transfer results in the formation of a robust 3D network of fibers, with improved aspect ratio, providing high thermo-mechanical stability to the gels compared to the native ones. The charge transfer gels self-assembled from G1-An/TNF (1:1) and G1-Py/TNF exhibit a 7.3- and 2.5-fold increase in their yield stress, respectively, compared to their native assemblies. A similar trend follows in the case of their thermal stabilities. This is attributed to the typical bilayer self-assembly of the former which is not present in the case of G1-Py/TNF charge transfer gel. Density functional calculations provide deeper insights accounting for the role of charge transfer interactions in the mode of self-assembly. The 1D potential energy surface for the G1-An/TNF dimer and G1-Py/TNF dimer is found to be 11.8 and 1.9 kcal mol-1 more stable than their corresponding native gel dimers, G1-An/G1-An and G1-Py/G1-Py, respectively.
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Affiliation(s)
- Sitakanta Satapathy
- Department of Chemistry, Indian Institute of Technology Madras (IIT M) , Chennai 600 036, India
| | - Edamana Prasad
- Department of Chemistry, Indian Institute of Technology Madras (IIT M) , Chennai 600 036, India
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21
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Toure M, Charles L, Chendo C, Viel S, Chuzel O, Parrain JL. Straightforward and Controlled Shape Access to Efficient Macrocyclic Imidazolylboronium Anion Receptors. Chemistry 2016; 22:8937-42. [DOI: 10.1002/chem.201601174] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Momar Toure
- Aix Marseille Université, Centrale Marseille, CNRS, iSm2 UMR 7313; 13397 Marseille France
| | - Laurence Charles
- Aix Marseille Université, CNRS, ICR UMR 7273; 13397 Marseille France
| | - Christophe Chendo
- Aix Marseille Université, CNRS, ICR UMR 7273; 13397 Marseille France
| | - Stéphane Viel
- Aix Marseille Université, CNRS, ICR UMR 7273; 13397 Marseille France
- Institut Universitaire de France; 75005 Paris France
| | - Olivier Chuzel
- Aix Marseille Université, Centrale Marseille, CNRS, iSm2 UMR 7313; 13397 Marseille France
| | - Jean-Luc Parrain
- Aix Marseille Université, Centrale Marseille, CNRS, iSm2 UMR 7313; 13397 Marseille France
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22
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Flood AH. Creating molecular macrocycles for anion recognition. Beilstein J Org Chem 2016; 12:611-27. [PMID: 27340452 PMCID: PMC4902025 DOI: 10.3762/bjoc.12.60] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Accepted: 03/07/2016] [Indexed: 11/23/2022] Open
Abstract
The creation and functionality of new classes of macrocycles that are shape persistent and can bind anions is described. The genesis of triazolophane macrocycles emerges out of activity surrounding 1,2,3-triazoles made using click chemistry; and the same triazoles are responsible for anion capture. Mistakes made and lessons learnt in anion recognition provide deeper understanding that, together with theory, now provides for computer-aided receptor design. The lessons are acted upon in the creation of two new macrocycles. First, cyanostars are larger and like to capture large anions. Second is tricarb, which also favors large anions but shows a propensity to self-assemble in an orderly and stable manner, laying a foundation for future designs of hierarchical nanostructures.
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Affiliation(s)
- Amar H Flood
- Department of Chemistry, Indiana University, Bloomington, IN 47405, USA
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23
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Lee S, Hirsch BE, Liu Y, Dobscha JR, Burke DW, Tait SL, Flood AH. Multifunctional Tricarbazolo Triazolophane Macrocycles: One-Pot Preparation, Anion Binding, and Hierarchical Self-Organization of Multilayers. Chemistry 2015; 22:560-9. [PMID: 26593327 DOI: 10.1002/chem.201503161] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Indexed: 01/23/2023]
Abstract
Programming the synthesis and self-assembly of molecules is a compelling strategy for the bottom-up fabrication of ordered materials. To this end, shape-persistent macrocycles were designed with alternating carbazoles and triazoles to program a one-pot synthesis and to bind large anions. The macrocycles bind anions that were once considered too weak to be coordinated, such as PF6 (-) , with surprisingly high affinities (β2 =10(11) M(-2) in 80:20 chloroform/methanol) and positive cooperativity, α=(4 K2 /K1 )=1200. We also discovered that the macrocycles assemble into ultrathin films of hierarchically ordered tubes on graphite surfaces. The remarkable surface-templated self-assembly properties, as was observed by using scanning tunneling microscopy, are attributed to the complementary pairing of alternating triazoles and carbazoles inscribed into both the co-facial and edge-sharing seams that exist between shape-persistent macrocycles. The multilayer assembly is also consistent with the high degree of molecular self-association observed in solution, with self-association constants of K=300 000 M(-1) (chloroform/methanol 80:20). Scanning tunneling microscopy data also showed that surface assemblies readily sequester iodide anions from solution, modulating their assembly. This multifunctional macrocycle provides a foundation for materials composed of hierarchically organized and nanotubular self-assemblies.
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Affiliation(s)
- Semin Lee
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405 (USA).,Current Address: Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 N Mathews Ave, Urbana, IL 61801 (USA)
| | - Brandon E Hirsch
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405 (USA)
| | - Yun Liu
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405 (USA)
| | - James R Dobscha
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405 (USA)
| | - David W Burke
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405 (USA)
| | - Steven L Tait
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405 (USA)
| | - Amar H Flood
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405 (USA)
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24
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Havel V, Sindelar V. Anion Binding Inside a Bambus[6]uril Macrocycle in Chloroform. Chempluschem 2015; 80:1601-1606. [DOI: 10.1002/cplu.201500345] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Indexed: 01/17/2023]
Affiliation(s)
- Vaclav Havel
- Department of Chemistry and RECETOX; Masaryk University; Kamenice 5 625 00 Brno Czech Republic
| | - Vladimir Sindelar
- Department of Chemistry and RECETOX; Masaryk University; Kamenice 5 625 00 Brno Czech Republic
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25
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Qiao B, Sengupta A, Liu Y, McDonald KP, Pink M, Anderson JR, Raghavachari K, Flood AH. Electrostatic and Allosteric Cooperativity in Ion-Pair Binding: A Quantitative and Coupled Experiment–Theory Study with Aryl–Triazole–Ether Macrocycles. J Am Chem Soc 2015. [DOI: 10.1021/jacs.5b05839] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bo Qiao
- Department of Chemistry, Indiana University, 800 East Kirkwood
Avenue, Bloomington, Indiana 47405, United States
| | - Arkajyoti Sengupta
- Department of Chemistry, Indiana University, 800 East Kirkwood
Avenue, Bloomington, Indiana 47405, United States
| | - Yun Liu
- Department of Chemistry, Indiana University, 800 East Kirkwood
Avenue, Bloomington, Indiana 47405, United States
| | - Kevin P. McDonald
- Department of Chemistry, Indiana University, 800 East Kirkwood
Avenue, Bloomington, Indiana 47405, United States
| | - Maren Pink
- Department of Chemistry, Indiana University, 800 East Kirkwood
Avenue, Bloomington, Indiana 47405, United States
| | - Joseph R. Anderson
- Department of Chemistry, Indiana University, 800 East Kirkwood
Avenue, Bloomington, Indiana 47405, United States
| | - Krishnan Raghavachari
- Department of Chemistry, Indiana University, 800 East Kirkwood
Avenue, Bloomington, Indiana 47405, United States
| | - Amar H. Flood
- Department of Chemistry, Indiana University, 800 East Kirkwood
Avenue, Bloomington, Indiana 47405, United States
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26
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Duan Q, Xia W, Lin C, Pan Y, Wang L. Two new triazolophanes: synthesis, structures, self-assembling, and anion complexation properties. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.05.013] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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27
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Robinson SW, Mustoe CL, White NG, Brown A, Thompson A, Kennepohl P, Beer PD. Evidence for halogen bond covalency in acyclic and interlocked halogen-bonding receptor anion recognition. J Am Chem Soc 2015; 137:499-507. [PMID: 25478893 PMCID: PMC4304450 DOI: 10.1021/ja511648d] [Citation(s) in RCA: 162] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2014] [Indexed: 12/13/2022]
Abstract
The synthesis and anion binding properties of novel halogen-bonding (XB) bis-iodotriazole-pyridinium-containing acyclic and [2]catenane anion host systems are described. The XB acyclic receptor displays selectivity for acetate over halides with enhanced anion recognition properties compared to the analogous hydrogen-bonding (HB) acyclic receptor. A reversal in halide selectivity is observed in the XB [2]catenane, in comparison to the acyclic XB receptor, due to the interlocked host's unique three-dimensional binding cavity, and no binding is observed for oxoanions. Notable halide anion association constant values determined for the [2]catenane in competitive organic-aqueous solvent mixtures demonstrate considerable enhancement of anion recognition as compared to the HB catenane analogue. X-ray crystallographic analysis of a series of halide catenane complexes reveal strong XB interactions in the solid state. These interactions were studied using Cl and Br K-edge X-ray Absorption Spectroscopy (XAS) indicating intense pre-edge features characteristic of charge transfer from the halide to its bonding partner (σ(AX←X(-))(*) ← X1s), and providing a direct measure of the degree of covalency in the halogen bond(s). The data reveal that the degree of covalency is similar to that which is observed in transition metal coordinate covalent bonds. These results are supported by DFT results, which correlate well with the experimental data.
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Affiliation(s)
- Sean W. Robinson
- Chemistry Research
Laboratory, Department of Chemistry, University
of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K.
| | - Chantal L. Mustoe
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia, Canada V6T 1Z1
| | - Nicholas G. White
- Chemistry Research
Laboratory, Department of Chemistry, University
of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K.
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia, Canada V6T 1Z1
| | - Asha Brown
- Chemistry Research
Laboratory, Department of Chemistry, University
of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K.
| | - Amber
L. Thompson
- Chemistry Research
Laboratory, Department of Chemistry, University
of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K.
| | - Pierre Kennepohl
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia, Canada V6T 1Z1
| | - Paul D. Beer
- Chemistry Research
Laboratory, Department of Chemistry, University
of Oxford, Mansfield
Road, Oxford OX1 3TA, U.K.
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28
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Bolliger JL, Ronson TK, Ogawa M, Nitschke JR. Solvent effects upon guest binding and dynamics of a Fe(II)4L4 cage. J Am Chem Soc 2014; 136:14545-53. [PMID: 25226369 DOI: 10.1021/ja5077102] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Solvent-dependent host-guest chemistry and favoring of otherwise disfavored conformations of large guests has been achieved with an adaptive, self-assembled Fe(II)4L4 coordination cage. Depending on the counterion, this face-capped tetrahedral capsule is soluble either in water or in acetonitrile and shows a solvent-dependent preference for encapsulation of certain classes of guest molecules. Quantitative binding studies were undertaken, revealing that both aromatic and aliphatic guests bind in water, whereas only aliphatic guests bind in acetonitrile. The flexibility of its subcomponent building blocks allows this cage to expand or contract upon guest binding, as studied by VT-NMR, thereby ensuring strong binding of both small and large guests. Upon encapsulation, large guest molecules can adopt conformations which are not thermodynamically favored in the free state. In addition, the chirotopic inner phase of the cage renders enantiotopic guest proton signals diastereotopic in specific cases.
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Affiliation(s)
- Jeanne L Bolliger
- Department of Chemistry, University of Cambridge , Lensfield Road, Cambridge CB2 1EW, United Kingdom
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29
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McDonald KP, Qiao B, Twum EB, Lee S, Gamache PJ, Chen CH, Yi Y, Flood AH. Quantifying chloride binding and salt extraction with poly(methyl methacrylate) copolymers bearing aryl-triazoles as anion receptor side chains. Chem Commun (Camb) 2014; 50:13285-8. [DOI: 10.1039/c4cc03362k] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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30
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Lee S, Hua Y, Flood AH. β-Sheet-like Hydrogen Bonds Interlock the Helical Turns of a Photoswitchable Foldamer To Enhance the Binding and Release of Chloride. J Org Chem 2014; 79:8383-96. [DOI: 10.1021/jo501595k] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Semin Lee
- Chemistry Department, Indiana University, 800 East
Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Yuran Hua
- Chemistry Department, Indiana University, 800 East
Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Amar H. Flood
- Chemistry Department, Indiana University, 800 East
Kirkwood Avenue, Bloomington, Indiana 47405, United States
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31
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Caricato M, González SD, Arandia Ariño I, Pasini D. Homochiral BINOL-based macrocycles with π-electron-rich, electron-withdrawing or extended spacing units as receptors for C60. Beilstein J Org Chem 2014; 10:1308-16. [PMID: 24991283 PMCID: PMC4077419 DOI: 10.3762/bjoc.10.132] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2013] [Accepted: 05/15/2014] [Indexed: 02/05/2023] Open
Abstract
The “one-pot” synthesis of several homochiral macrocycles has been achieved by using π-electron-rich, electron-deficient or extended aromatic dicarboxylic acids in combination with an axially-chiral dibenzylic alcohol, derived from enantiomerically-pure BINOL. Two series of cyclic adducts with average molecular D2 and D3 molecular symmetries, respectively, have been isolated in pure forms. Their yields and selectivities deviate substantially from statistical distributions. NMR and CD spectroscopic methods are efficient and functional in order to highlight the variability of shapes of the covalent macrocyclic frameworks. The larger D3 cyclic adducts exhibit recognition properties towards C60 in toluene solutions (up to log Ka = 3.2) with variable stoichiometries and variable intensities of the charge-tranfer band upon complexation.
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Affiliation(s)
- Marco Caricato
- Department of Chemistry, University of Pavia, Viale Taramelli 10, 27100 Pavia, Italy
| | - Silvia Díez González
- Department of Chemistry, University of Pavia, Viale Taramelli 10, 27100 Pavia, Italy
| | - Idoia Arandia Ariño
- Department of Chemistry, University of Pavia, Viale Taramelli 10, 27100 Pavia, Italy
| | - Dario Pasini
- Department of Chemistry, University of Pavia, Viale Taramelli 10, 27100 Pavia, Italy ; INSTM Research Unit, Department of Chemistry, University of Pavia, 27100 Pavia, Italy
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32
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Shang J, Gallagher NM, Bie F, Li Q, Che Y, Wang Y, Jiang H. Aromatic Triazole Foldamers Induced by C–H···X (X = F, Cl) Intramolecular Hydrogen Bonding. J Org Chem 2014; 79:5134-44. [DOI: 10.1021/jo500582c] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Jie Shang
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Nolan M. Gallagher
- Department
of Chemistry, University of Nebraska, Lincoln, Nebraska 68588-0304, United States
| | - Fusheng Bie
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qiaolian Li
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yanke Che
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Ying Wang
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- Department
of Chemistry, University of Nebraska, Lincoln, Nebraska 68588-0304, United States
| | - Hua Jiang
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- College
of Chemistry, Beijing Normal University, Beijing 100875, China
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33
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Ramabhadran RO, Hua Y, Flood AH, Raghavachari K. C vs N: Which End of the Cyanide Anion Is a Better Hydrogen Bond Acceptor? J Phys Chem A 2014; 118:7418-23. [DOI: 10.1021/jp412816w] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
| | - Yuran Hua
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Amar H. Flood
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Krishnan Raghavachari
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
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34
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Ramabhadran RO, Liu Y, Hua Y, Ciardi M, Flood AH, Raghavachari K. An overlooked yet ubiquitous fluoride congenitor: binding bifluoride in triazolophanes using computer-aided design. J Am Chem Soc 2014; 136:5078-89. [PMID: 24559019 DOI: 10.1021/ja500125r] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Despite its ubiquity during the binding and sensing of fluoride, the role of bifluoride (HF2(-)) and its binding properties are almost always overlooked. Here, we give one of the first examinations of bifluoride recognition in which we use computer-aided design to modify the cavity shape of triazolophanes to better match with HF2(-). Computational investigation indicates that HF2(-) and Cl(-) should have similar binding affinities to the parent triazolophane in the gas phase. Evaluation of the binding geometries revealed a preference for binding of the linear HF2(-) along the north-south axis with a smaller Boltzmann weighted population aligned east-west and all states being accessed rapidly through in-plane precessional rotations of the anion. While the (1)H NMR spectroscopy studies are consistent with the calculated structural aspects, binding affinities in solution were determined to be significantly smaller for the bifluoride than the chloride. Computed geometries suggested that a 20° tilting of the bifluoride (stemming from the cavity size) could account for the 25-fold difference between the two binding affinities, HF2(-) < Cl(-). Structural variations to the triazolophane's geometry and electronic modifications to the network of hydrogen bond donors were subsequently screened in a stepwise manner using density functional theory calculations to yield a final design that eliminates the tilting. Correspondingly, the bifluoride's binding affinity (K ∼ 10(6) M(-1)) increased and was also found to remain equal to chloride in the gas and solution phases. The new oblate cavity appeared to hold the HF2(-) in a single east-west arrangement. Our findings demonstrate the promising ability of computer-aided design to fine-tune the structural and electronic match in anion receptors as a means to control the arrangement and binding strength of a desired guest.
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Affiliation(s)
- Raghunath O Ramabhadran
- Department of Chemistry, Indiana University , 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
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35
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White NG, Lovett HG, Beer PD. Bis-triazolium containing macrocycles, pseudorotaxanes and interlocked structures for anion recognition. RSC Adv 2014. [DOI: 10.1039/c4ra00615a] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
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36
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Van Rossom W, Terentyeva TG, Sodeyama K, Matsushita Y, Tateyama Y, Ariga K, Hill JP. Arylpyrrole oligomers as tunable anion receptors. Org Biomol Chem 2014; 12:5492-9. [DOI: 10.1039/c4ob00357h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel class of oligomeric arylpyrrole receptors has been designed, prepared and analysed for their affinity towards anionic guests.
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Affiliation(s)
- Wim Van Rossom
- World Premier International (WPI)
- Research Center for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba, Japan
| | - Tatyana G. Terentyeva
- World Premier International (WPI)
- Research Center for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba, Japan
| | - Keitaro Sodeyama
- World Premier International (WPI)
- Research Center for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba, Japan
| | - Yoshitaka Matsushita
- World Premier International (WPI)
- Research Center for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba, Japan
| | - Yoshitaka Tateyama
- World Premier International (WPI)
- Research Center for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba, Japan
| | - Katsuhiko Ariga
- World Premier International (WPI)
- Research Center for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba, Japan
| | - Jonathan P. Hill
- World Premier International (WPI)
- Research Center for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba, Japan
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37
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Schulze B, Schubert US. Beyond click chemistry – supramolecular interactions of 1,2,3-triazoles. Chem Soc Rev 2014; 43:2522-71. [DOI: 10.1039/c3cs60386e] [Citation(s) in RCA: 583] [Impact Index Per Article: 58.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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38
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Knipe PC, Lingard H, Jones IM, Thompson S, Hamilton AD. A Lewis acid-mediated conformational switch. Org Biomol Chem 2014; 12:7937-41. [DOI: 10.1039/c4ob01556h] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
An isonicotinamide-substituted diphenylacetylene undergoes conformational switching upon recognition of Lewis acids.
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Affiliation(s)
- Peter C. Knipe
- Department of Chemistry
- Chemistry Research Laboratory
- University of Oxford
- Oxford, UK
| | - Hannah Lingard
- Department of Chemistry
- Chemistry Research Laboratory
- University of Oxford
- Oxford, UK
| | - Ian M. Jones
- Department of Chemistry
- Chemistry Research Laboratory
- University of Oxford
- Oxford, UK
| | - Sam Thompson
- Department of Chemistry
- Chemistry Research Laboratory
- University of Oxford
- Oxford, UK
| | - Andrew D. Hamilton
- Department of Chemistry
- Chemistry Research Laboratory
- University of Oxford
- Oxford, UK
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39
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Shi G, Gadhe CG, Park SW, Kim KS, Kang J, Seema H, Singh NJ, Cho SJ. Novel Ionophores with 2n-Crown-n Topology: Anion Sensing via Pure Aliphatic C–H···Anion Hydrogen Bonding. Org Lett 2013; 16:334-7. [DOI: 10.1021/ol402819m] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Genggongwo Shi
- Department
of Chemistry, Pohang University of Science and Technology, Pohang, 790-784, Republic of Korea
| | - Changdev G. Gadhe
- Department
of Bio-new-drug Development, Chosun University, Gwangju, 501-759, Republic of Korea
| | - Sung-Woo Park
- Department
of Chemistry, Pohang University of Science and Technology, Pohang, 790-784, Republic of Korea
| | - Kwang S. Kim
- Department
of Chemistry, Pohang University of Science and Technology, Pohang, 790-784, Republic of Korea
| | - Jongmin Kang
- Department
of Chemistry, Sejong University, Seoul 143-747, Republic of Korea
| | - Humaira Seema
- Department
of Chemistry, Pohang University of Science and Technology, Pohang, 790-784, Republic of Korea
| | - N. Jiten Singh
- Department
of Chemistry, Pohang University of Science and Technology, Pohang, 790-784, Republic of Korea
| | - Seung Joo Cho
- Department
of Bio-new-drug Development, Chosun University, Gwangju, 501-759, Republic of Korea
- Department
of Cellular·Molecular Medicine, College of Medicine, Chosun University, 375 Seosuk-dong, Dong-gu, Gwangju, 501-759, Republic of Korea
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40
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Fa-yin T, Liu N, Yuan-yuan Z, Yin J, Chen Y, Zong-quan W. SYNTHESIS OF HIGH MOLECULAR WEIGHT POLY(CARBAZOLE)S VIA CLICK POLYMERIZATION. ACTA POLYM SIN 2013. [DOI: 10.3724/sp.j.1105.2013.13140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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41
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Gale PA, Busschaert N, Haynes CJE, Karagiannidis LE, Kirby IL. Anion receptor chemistry: highlights from 2011 and 2012. Chem Soc Rev 2013; 43:205-41. [PMID: 24108306 DOI: 10.1039/c3cs60316d] [Citation(s) in RCA: 386] [Impact Index Per Article: 35.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
This review covers advances in anion complexation in the years 2011 and 2012. The review covers both organic and inorganic systems and also highlights the applications to which anion receptors can be applied such as self-assembly and molecular architecture, sensing, catalysis and anion transport.
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Affiliation(s)
- Philip A Gale
- Chemistry, University of Southampton, Southampton, SO17 1BJ, UK.
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42
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Hua Y, Liu Y, Chen CH, Flood AH. Hydrophobic collapse of foldamer capsules drives picomolar-level chloride binding in aqueous acetonitrile solutions. J Am Chem Soc 2013; 135:14401-12. [PMID: 24028552 DOI: 10.1021/ja4074744] [Citation(s) in RCA: 155] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Aqueous media are competitive environments in which to perform host-guest chemistry, particularly when the guest is highly charged. While hydrophobic binding is a recognized approach to this challenge in which apolar pockets can be designed to recognize apolar guests in water, complementary strategies are required for hydrophilic anions like chloride. Here, we present evidence of such an alternative mechanism, used everyday by proteins yet rare for artificial receptors, wherein hydrophobic interactions are shown to be responsible for organizing and stabilizing an aryl-triazole foldamer to help extract hydrophilic chloride ions from increasingly aqueous solutions. Therein, a double-helical complex gains stability upon burial of ∼80% of the π surfaces that simultaneously creates a potent, solvent-excluding microenvironment for hydrogen bonding. The chloride's overall affinity to the duplex is substantial in 25% water v/v in acetonitrile (log β2 = 12.6), and it remains strong (log β2 = 13.0) as the water content is increased to 50%. With the rise in predictable designs of abiological foldamers, this water-assisted strategy can, in principle, be utilized for binding other hydrophilic guests.
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Affiliation(s)
- Yuran Hua
- Department of Chemistry, Indiana University , 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
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43
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Tresca BW, Zakharov LN, Carroll CN, Johnson DW, Haley MM. Aryl C-H···Cl(-) hydrogen bonding in a fluorescent anion sensor. Chem Commun (Camb) 2013; 49:7240-2. [PMID: 23843050 DOI: 10.1039/c3cc44574g] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new phenyl-acetylene receptor containing a carbonaceous hydrogen bond donor activates anion binding in conjunction with two stabilizing ureas. The unusual CH···Cl(-) hydrogen bond is apparent in solution by large (1)H NMR chemical shifts and by a short, linear contact in the solid state.
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Affiliation(s)
- Blakely W Tresca
- Department of Chemistry & Biochemistry and the Materials Science Institute, University of Oregon, Eugene, OR 97403-1253, USA
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44
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Bolliger JL, Belenguer AM, Nitschke JR. Enantiopure Water-Soluble [Fe4L6] Cages: Host-Guest Chemistry and Catalytic Activity. Angew Chem Int Ed Engl 2013; 52:7958-62. [DOI: 10.1002/anie.201302136] [Citation(s) in RCA: 182] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2013] [Indexed: 11/11/2022]
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45
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Bolliger JL, Belenguer AM, Nitschke JR. Enantiomerenreine wasserlösliche [Fe4L6]-Käfigverbindungen: Wirt-Gast-Chemie und katalytische Aktivität. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201302136] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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46
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Song NR, Moon JH, Choi J, Jun EJ, Kim Y, Kim SJ, Lee JY, Yoon J. Cyclic benzobisimidazolium derivative for the selective fluorescent recognition of HSO4−via a combination of C–H hydrogen bonds and charge interactions. Chem Sci 2013. [DOI: 10.1039/c3sc22201b] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
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47
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Mesquida N, Dinarès I, Ibáñez A, Alcalde E. [14]Heterophane prototypes containing azolium and/or azole anion-binding motifs. Org Biomol Chem 2013; 11:6385-96. [DOI: 10.1039/c3ob41214h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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48
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White NG, Beer PD. A rotaxane host system containing integrated triazole C–H hydrogen bond donors for anion recognition. Org Biomol Chem 2013; 11:1326-33. [DOI: 10.1039/c2ob27229f] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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49
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Lowe AJ, Long BM, Pfeffer FM. Conformationally preorganised hosts for anions using norbornane and fused [n]polynorbornane frameworks. Chem Commun (Camb) 2013; 49:3376-88. [DOI: 10.1039/c3cc40702k] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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50
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Caricato M, Leza NJ, Gargiulli C, Gattuso G, Dondi D, Pasini D. Synthesis and anion recognition properties of shape-persistent binaphthyl-containing chiral macrocyclic amides. Beilstein J Org Chem 2012; 8:967-76. [PMID: 23015847 PMCID: PMC3388887 DOI: 10.3762/bjoc.8.109] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2012] [Accepted: 05/23/2012] [Indexed: 11/23/2022] Open
Abstract
We report on the synthesis and characterization of novel shape-persistent, optically active arylamide macrocycles, which can be obtained using a one-pot methodology. Resolved, axially chiral binol scaffolds, which incorporate either methoxy or acetoxy functionalities in the 2,2' positions and carboxylic functionalities in the external 3,3' positions, were used as the source of chirality. Two of these binaphthyls are joined through amidation reactions using rigid diaryl amines of differing shapes, to give homochiral tetraamidic macrocycles. The recognition properties of these supramolecular receptors have been analyzed, and the results indicate a modulation of binding affinities towards dicarboxylate anions, with a drastic change of binding mode depending on the steric and electronic features of the functional groups in the 2,2' positions.
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Affiliation(s)
- Marco Caricato
- Department of Chemistry, University of Pavia, Viale Taramelli 10, 27100 Pavia, Italy
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