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Milovanović MR, Stanković IM, Živković JM, Ninković DB, Hall MB, Zarić SD. Water: new aspect of hydrogen bonding in the solid state. IUCRJ 2022; 9:639-647. [PMID: 36071797 PMCID: PMC9438494 DOI: 10.1107/s2052252522006728] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Abstract
All water-water contacts in the crystal structures from the Cambridge Structural Database with d OO ≤ 4.0 Å have been found. These contacts were analysed on the basis of their geometries and interaction energies from CCSD(T)/CBS calculations. The results show 6729 attractive water-water contacts, of which 4717 are classical hydrogen bonds (d OH ≤ 3.0 Å and α ≥ 120°) with most being stronger than -3.3 kcal mol-1. Beyond the region of these hydrogen bonds, there is a large number of attractive interactions (2062). The majority are antiparallel dipolar interactions, where the O-H bonds of two water molecules lying in parallel planes are oriented antiparallel to each other. Developing geometric criteria for these antiparallel dipoles (β1, β2 ≥ 160°, 80 ≤ α ≤ 140° and T HOHO > 40°) yielded 1282 attractive contacts. The interaction energies of these antiparallel oriented water molecules are up to -4.7 kcal mol-1, while most of the contacts have interaction energies in the range -0.9 to -2.1 kcal mol-1. This study suggests that the geometric criteria for defining attractive water-water interactions should be broader than the classical hydrogen-bonding criteria, a change that may reveal undiscovered and unappreciated interactions controlling molecular structure and chemistry.
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Affiliation(s)
- Milan R. Milovanović
- Innovation Center of the Faculty of Chemistry, Studentski trg 12-16, Belgrade 11000, Serbia
| | - Ivana M. Stanković
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Njegoševa 12, Belgrade, 11000 Serbia
| | - Jelena M. Živković
- Innovation Center of the Faculty of Chemistry, Studentski trg 12-16, Belgrade 11000, Serbia
| | - Dragan B. Ninković
- Innovation Center of the Faculty of Chemistry, Studentski trg 12-16, Belgrade 11000, Serbia
| | - Michael B. Hall
- Department of Chemistry, Texas A&M University, College Station, TX 77843-3255, USA
| | - Snežana D. Zarić
- Faculty of Chemistry, University of Belgrade, Studentski trg 12-16, Belgrade 11000, Serbia
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Kinoshita T, Sakuraba M, Hoshimoto Y, Ogoshi S. Complexation between MOTf (M = Li and Na) and N-Phosphine Oxide-substituted Imidazolylidenes via Coordination of the N-Phosphoryl Groups. CHEM LETT 2019. [DOI: 10.1246/cl.180930] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Takuya Kinoshita
- Department of Applied Chemistry, Faculty of Engineering, Osaka University, Suita, Osaka 565-0871, Japan
| | - Mahiro Sakuraba
- Department of Applied Chemistry, Faculty of Engineering, Osaka University, Suita, Osaka 565-0871, Japan
| | - Yoichi Hoshimoto
- Department of Applied Chemistry, Faculty of Engineering, Osaka University, Suita, Osaka 565-0871, Japan
| | - Sensuke Ogoshi
- Department of Applied Chemistry, Faculty of Engineering, Osaka University, Suita, Osaka 565-0871, Japan
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3
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Kang K, Lohrman JA, Nagarajan S, Chen L, Deng P, Shen X, Fu K, Feng W, Johnson DW, Yuan L. Convergent Ditopic Receptors Enhance Anion Binding upon Alkali Metal Complexation for Catalyzing the Ritter Reaction. Org Lett 2019; 21:652-655. [PMID: 30638017 PMCID: PMC6653609 DOI: 10.1021/acs.orglett.8b03778] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A supramolecular approach to catalyzing the Ritter reaction by utilizing enhanced anion-binding affinity in the presence of alkali metal cations was developed with ditopic hydrogen-bonded amide macrocycles. With prebound cations in the macrocycle, particularly Li+ ion, their metal complexes exhibit greatly enhanced catalytic activities. The catalysis is switchable by removal or addition of the bound cation. The method described in this work may be generalized for use in other anion-triggered organic reactions involving heteroditopic receptors capable of ion pairing.
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Affiliation(s)
- Kang Kang
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
| | - Jessica A. Lohrman
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
| | - Sangaraiah Nagarajan
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
| | - Lixi Chen
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
| | - Pengchi Deng
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
| | - Xin Shen
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
| | - Kuirong Fu
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
| | - Wen Feng
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
| | - Darren W. Johnson
- Department of Chemistry & Biochemistry and the Materials Science Institute, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Lihua Yuan
- Key Laboratory for Radiation Physics and Technology of Ministry of Education, Institute of Nuclear Science and Technology, College of Chemistry, Analytical & Testing Center, Sichuan University, Chengdu 610064, China
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4
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Guo X, Yang Y, Peng Z, Cai Y, Feng W, Yuan L. Highly efficient synthesis of hydrogen-bonded aromatic tetramers as macrocyclic receptors for selective recognition of lithium ions. Org Chem Front 2019. [DOI: 10.1039/c9qo00612e] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Lithium ion receptor based on novel hydrogen-bonded aromatic tetramer biphenyl-cyclo[4]aramide has been developed.
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Affiliation(s)
- Xuwen Guo
- College of Chemistry
- Key Laboratory for Radiation Physics and Technology of Ministry of Education
- Sichuan University
- Chengdu 610064
- China
| | - Yizhou Yang
- College of Chemistry
- Key Laboratory for Radiation Physics and Technology of Ministry of Education
- Sichuan University
- Chengdu 610064
- China
| | - Zhiyong Peng
- College of Chemistry
- Key Laboratory for Radiation Physics and Technology of Ministry of Education
- Sichuan University
- Chengdu 610064
- China
| | - Yimin Cai
- College of Chemistry
- Key Laboratory for Radiation Physics and Technology of Ministry of Education
- Sichuan University
- Chengdu 610064
- China
| | - Wen Feng
- College of Chemistry
- Key Laboratory for Radiation Physics and Technology of Ministry of Education
- Sichuan University
- Chengdu 610064
- China
| | - Lihua Yuan
- College of Chemistry
- Key Laboratory for Radiation Physics and Technology of Ministry of Education
- Sichuan University
- Chengdu 610064
- China
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5
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Zukerman-Schpector J, Tiekink ERT. On the role of DMSO-O(lone pair)⋯π(arene), DMSO-S(lone pair)⋯π(arene) and SO⋯π(arene) interactions in the crystal structures of dimethyl sulphoxide (DMSO) solvates. CrystEngComm 2014. [DOI: 10.1039/c4ce00305e] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
DMSO-O(lone pair)⋯π(arene), DMSO-S(lone pair)⋯π(arene) and SO⋯π(arene) interactions are found in DMSO solvates.
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Affiliation(s)
- Julio Zukerman-Schpector
- Laboratório de Cristalografia
- Estereodinâmica e Modelagem Molecular
- Departamento de Química
- Universidade Federal de São Carlos
- São Carlos, Brazil
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Gavette JV, Lara J, Reling LL, Haley MM, Johnson DW. Lithium-selective phosphine oxide-based ditopic receptors show enhanced halide binding upon alkali metal ion coordination. Chem Sci 2013; 4:585-590. [PMID: 23505609 PMCID: PMC3595051 DOI: 10.1039/c2sc21501b] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Previous work on a ditopic receptor based on a tripodal phosphine oxide core demonstrated preferential enhancement of bromide binding over chloride or iodide in the presence of lithium cation. Current studies on an elongated receptor provide evidence that preferential bromide binding enhancement in the presence of lithium cation is common to this receptor class in general, and that lengthening of the receptor results in an overall increase in halide association. Furthermore, the extended receptor shows a strong preference for Li+ binding in solution.
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Affiliation(s)
- Jesse V. Gavette
- Department of Chemistry and the Materials Science Institute, University of Oregon, Eugene, OR 97403-1253, USA
| | - Juven Lara
- Department of Chemistry and the Materials Science Institute, University of Oregon, Eugene, OR 97403-1253, USA
| | - Linda L. Reling
- Department of Chemistry and the Materials Science Institute, University of Oregon, Eugene, OR 97403-1253, USA
| | - Michael M. Haley
- Department of Chemistry and the Materials Science Institute, University of Oregon, Eugene, OR 97403-1253, USA
| | - Darren W. Johnson
- Department of Chemistry and the Materials Science Institute, University of Oregon, Eugene, OR 97403-1253, USA
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Bose P, Ravikumar I, Akhuli B, Ghosh P. A Series of Amino Acid Functionalized Tripodal Hexaamide Anion Receptors: Ion-Pair-Assisted Capped-Cleft Formation by a Pentafluorophenyl-Functionalized Amide. Chem Asian J 2012; 7:2373-80. [DOI: 10.1002/asia.201200428] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2012] [Revised: 06/11/2012] [Indexed: 11/10/2022]
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Wu L, Liu L, Fang R, Deng C, Han J, Hu H, Lin C, Wang L. New P-bridgehead urea-based tripodal anion receptors for H2PO4− recognition. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.05.018] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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