1
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Konvalinková D, Dolníček F, Hovorková M, Červený J, Kundrát O, Pelantová H, Petrásková L, Cvačka J, Faizulina M, Varghese B, Kovaříček P, Křen V, Lhoták P, Bojarová P. Glycocalix[4]arenes and their affinity to a library of galectins: the linker matters. Org Biomol Chem 2023; 21:1294-1302. [PMID: 36647793 DOI: 10.1039/d2ob02235d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Galectins are lectins that bind β-galactosides. They are involved in important extra- and intracellular biological processes such as apoptosis, and regulation of the immune system or the cell cycle. High-affinity ligands of galectins may introduce new therapeutic approaches or become new tools for biomedical research. One way of increasing the low affinity of β-galactoside ligands to galectins is their multivalent presentation, e.g., using calixarenes. We report on the synthesis of glycocalix[4]arenes in cone, partial cone, 1,2-alternate, and 1,3-alternate conformations carrying a lactosyl ligand on three different linkers. The affinity of the prepared compounds to a library of human galectins was determined using competitive ELISA assay and biolayer interferometry. Structure-affinity relationships regarding the influence of the linker and the core structure were formulated. Substantial differences were found between various linker lengths and the position of the triazole unit. The formation of supramolecular clusters was detected by atomic force microscopy. The present work gives a systematic insight into prospective galectin ligands based on the calix[4]arene core.
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Affiliation(s)
- Dorota Konvalinková
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic.
| | - František Dolníček
- Department of Organic Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-16628 Praha 6, Czech Republic.
| | - Michaela Hovorková
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic. .,Department of Genetics and Microbiology, Faculty of Science, Charles University, Viničná 5, CZ-12843 Prague 2, Czech Republic
| | - Jakub Červený
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic. .,Department of Analytical Chemistry, Faculty of Science, Charles University, Hlavova 8, CZ-12843 Prague 2, Czech Republic
| | - Ondřej Kundrát
- Department of Organic Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-16628 Praha 6, Czech Republic.
| | - Helena Pelantová
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic.
| | - Lucie Petrásková
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic.
| | - Josef Cvačka
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nám. 2, CZ-166 10 Prague 6, Czech Republic
| | - Margarita Faizulina
- Department of Organic Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-16628 Praha 6, Czech Republic.
| | - Beena Varghese
- Department of Organic Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-16628 Praha 6, Czech Republic.
| | - Petr Kovaříček
- Department of Organic Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-16628 Praha 6, Czech Republic.
| | - Vladimír Křen
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic.
| | - Pavel Lhoták
- Department of Organic Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-16628 Praha 6, Czech Republic.
| | - Pavla Bojarová
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic. .,Department of Health Care Disciplines and Population Protection, Faculty of Biomedical Engineering, Czech Technical University in Prague, nám. Sítná 3105, CZ-272 01 Kladno, Czech Republic
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2
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Duca M, Haksar D, van Neer J, Thies-Weesie DM, Martínez-Alarcón D, de Cock H, Varrot A, Pieters RJ. Multivalent Fucosides Targeting β-Propeller Lectins from Lung Pathogens with Promising Anti-Adhesive Properties. ACS Chem Biol 2022; 17:3515-3526. [PMID: 36414265 PMCID: PMC9764287 DOI: 10.1021/acschembio.2c00708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Fungal and bacterial pathogens causing lung infections often use lectins to mediate adhesion to glycoconjugates at the surface of host tissues. Given the rapid emergence of resistance to the treatments in current use, β-propeller lectins such as FleA from Aspergillus fumigatus, SapL1 from Scedosporium apiospermum, and BambL from Burkholderia ambifaria have become appealing targets for the design of anti-adhesive agents. In search of novel and cheap anti-infectious agents, we synthesized multivalent compounds that can display up to 20 units of fucose, the natural ligand. We obtained nanomolar inhibitors that are several orders of magnitude stronger than their monovalent analogue according to several biophysical techniques (i.e., fluorescence polarization, isothermal titration calorimetry, and bio-layer interferometry). The reason for high affinity might be attributed to a strong aggregating mechanism, which was examined by analytical ultracentrifugation. Notably, the fucosylated inhibitors reduced the adhesion of A. fumigatus spores to lung epithelial cells when administered 1 h before or after the infection of human lung epithelial cells. For this reason, we propose them as promising anti-adhesive drugs for the prevention and treatment of aspergillosis and related microbial lung infections.
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Affiliation(s)
- Margherita Duca
- Department
of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical
Sciences, Utrecht University, NL-3508 TB Utrecht, The Netherlands,Department
of Biology, Utrecht University, Padualaan 8, 3584 CS Utrecht, The Netherlands,Univ.
Grenoble Alpes, CNRS, CERMAV, 38000 Grenoble, France
| | - Diksha Haksar
- Department
of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical
Sciences, Utrecht University, NL-3508 TB Utrecht, The Netherlands
| | - Jacq van Neer
- Department
of Biology, Utrecht University, Padualaan 8, 3584 CS Utrecht, The Netherlands
| | - Dominique M.E. Thies-Weesie
- Debye
Institute for Nanomaterials Science, Utrecht
University, Padualaan
8, 3584 CS Utrecht, The Netherlands
| | | | - Hans de Cock
- Department
of Biology, Utrecht University, Padualaan 8, 3584 CS Utrecht, The Netherlands,
| | | | - Roland J. Pieters
- Department
of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical
Sciences, Utrecht University, NL-3508 TB Utrecht, The Netherlands,
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3
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Rim-differentiation vs. mixture of constitutional isomers: A binding study between pillar[5]arene-based glycoclusters and lectins from pathogenic bacteria. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.107872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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4
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Wojtczak K, Byrne JP. Structural considerations for building synthetic glycoconjugates as inhibitors for Pseudomonas aeruginosa lectins. ChemMedChem 2022; 17:e202200081. [PMID: 35426976 PMCID: PMC9321714 DOI: 10.1002/cmdc.202200081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 04/13/2022] [Indexed: 11/16/2022]
Abstract
Pseudomonas aeruginosa is a pathogenic bacterium, responsible for a large portion of nosocomial infections globally and designated as critical priority by the World Health Organisation. Its characteristic carbohydrate‐binding proteins LecA and LecB, which play a role in biofilm‐formation and lung‐infection, can be targeted by glycoconjugates. Here we review the wide range of inhibitors for these proteins (136 references), highlighting structural features and which impact binding affinity and/or therapeutic effects, including carbohydrate selection; linker length and rigidity; and scaffold topology, particularly for multivalent candidates. We also discuss emerging therapeutic strategies, which build on targeting of LecA and LecB, such as anti‐biofilm activity, anti‐adhesion and drug‐delivery, with promising prospects for medicinal chemistry.
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Affiliation(s)
- Karolina Wojtczak
- National University of Ireland Galway School of Biological and Chemical Sciences University Road H91 TK33 Galway IRELAND
| | - Joseph Peter Byrne
- National University of Ireland Galway School of Chemistry University Road H91 TK33 Galway IRELAND
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5
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O'Reilly C, Blasco S, Parekh B, Collins H, Cooke G, Gunnlaugsson T, Byrne JP. Ruthenium-centred btp glycoclusters as inhibitors for Pseudomonas aeruginosa biofilm formation. RSC Adv 2021; 11:16318-16325. [PMID: 35479152 PMCID: PMC9030604 DOI: 10.1039/d0ra05107a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Accepted: 04/26/2021] [Indexed: 11/21/2022] Open
Abstract
Carbohydrate-decorated clusters (glycoclusters) centred on a Ru(ii) ion were synthesised and tested for their activity against Pseudomonas aeruginosa biofilm formation. These clusters were designed by conjugating a range of carbohydrate motifs (galactose, glucose, mannose and lactose, as well as galactose with a triethylene glycol spacer) to a btp (2,6-bis(1,2,3-triazol-4-yl)pyridine) scaffold. This scaffold, which possesses a C2 symmetry, is an excellent ligand for d-metal ions, and thus the formation of the Ru(ii)-centred glycoclusters 7 and 8Gal was achieved from 5 and 6Gal; each possessing four deprotected carbohydrates. Glycocluster 8Gal, which has a flexible spacer between the btp and galactose moieties, showed significant inhibition of P. aeruginosa bacterial biofilm formation. By contrast, glycocluster 7, which lacked the flexible linker, didn't show significant antimicrobial effects and neither does the ligand 6Gal alone. These results are proposed to arise from carbohydrate–lectin interactions with LecA, which are possible for the flexible metal-centred multivalent glycocluster. Metal-centred glycoclusters present a structurally versatile class of antimicrobial agent for P. aeruginosa, of which this is, to the best of our knowledge, the first example. Ruthenium-centred glycoclusters based on carbohydrate-functionalised bis(triazolyl)pyridine ligands show Pseudomonas aeruginosa biofilm inhibition, with activity that is dependent on ligand structure.![]()
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Affiliation(s)
- Ciaran O'Reilly
- School of Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin Ireland.,School of Medicine, University College Dublin Belfield Dublin 4 Ireland
| | - Salvador Blasco
- School of Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin Ireland
| | - Bina Parekh
- School of Medicine, University College Dublin Belfield Dublin 4 Ireland
| | - Helen Collins
- Department of Applied Science, Tallaght Campus, Technological University Dublin Ireland
| | - Gordon Cooke
- School of Medicine, University College Dublin Belfield Dublin 4 Ireland.,Department of Applied Science, Tallaght Campus, Technological University Dublin Ireland
| | | | - Joseph P Byrne
- School of Chemistry, National University of Ireland Galway University Road Galway Ireland
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6
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Stuart-Walker W, Mahon CS. Glycomacromolecules: Addressing challenges in drug delivery and therapeutic development. Adv Drug Deliv Rev 2021; 171:77-93. [PMID: 33539854 DOI: 10.1016/j.addr.2021.01.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2020] [Revised: 01/15/2021] [Accepted: 01/23/2021] [Indexed: 12/18/2022]
Abstract
Carbohydrate-based materials offer exciting opportunities for drug delivery. They present readily available, biocompatible components for the construction of macromolecular systems which can be loaded with cargo, and can enable targeting of a payload to particular cell types through carbohydrate recognition events established in biological systems. These systems can additionally be engineered to respond to environmental stimuli, enabling triggered release of payload, to encompass multiple modes of therapeutic action, or to simultaneously fulfil a secondary function such as enabling imaging of target tissue. Here, we will explore the use of glycomacromolecules to deliver therapeutic benefits to address key health challenges, and suggest future directions for development of next-generation systems.
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7
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Bi F, Zhang C, Yang G, Wang J, Zheng W, Hua Z, Li X, Wang Z, Chen G. Photoresponsive glyco-nanostructures integrated from supramolecular metallocarbohydrates for the reversible capture and release of lectins. Polym Chem 2021. [DOI: 10.1039/d1py00146a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Photo-controllable capture and release of proteins by glyco-nanostructures.
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Affiliation(s)
- Feihu Bi
- Biomass Molecular Engineering Center and Department of Materials Science and Engineering
- School of Forestry and Landscape Architecture
- Anhui Agricultural University
- Hefei
- China
| | - Changwei Zhang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- School of Chemistry and Molecular Engineering
- East China Normal University
- Shanghai 200062
- P. R. China
| | - Guang Yang
- Biomass Molecular Engineering Center and Department of Materials Science and Engineering
- School of Forestry and Landscape Architecture
- Anhui Agricultural University
- Hefei
- China
| | - Jie Wang
- Biomass Molecular Engineering Center and Department of Materials Science and Engineering
- School of Forestry and Landscape Architecture
- Anhui Agricultural University
- Hefei
- China
| | - Wei Zheng
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes
- School of Chemistry and Molecular Engineering
- East China Normal University
- Shanghai 200062
- P. R. China
| | - Zan Hua
- Biomass Molecular Engineering Center and Department of Materials Science and Engineering
- School of Forestry and Landscape Architecture
- Anhui Agricultural University
- Hefei
- China
| | - Xiaopeng Li
- Department of Chemistry
- University of South Florida
- Tampa
- USA
| | - Zhongkai Wang
- Biomass Molecular Engineering Center and Department of Materials Science and Engineering
- School of Forestry and Landscape Architecture
- Anhui Agricultural University
- Hefei
- China
| | - Guosong Chen
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science
- Fudan University
- Shanghai 200433
- P. R. China
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8
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Antimicrobial Activity of Calixarenes and Related Macrocycles. Molecules 2020; 25:molecules25215145. [PMID: 33167339 PMCID: PMC7663816 DOI: 10.3390/molecules25215145] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 10/29/2020] [Accepted: 11/01/2020] [Indexed: 12/21/2022] Open
Abstract
Calixarenes and related macrocycles have been shown to have antimicrobial effects since the 1950s. This review highlights the antimicrobial properties of almost 200 calixarenes, resorcinarenes, and pillararenes acting as prodrugs, drug delivery agents, and inhibitors of biofilm formation. A particularly important development in recent years has been the use of macrocycles with substituents terminating in sugars as biofilm inhibitors through their interactions with lectins. Although many examples exist where calixarenes encapsulate, or incorporate, antimicrobial drugs, one of the main factors to emerge is the ability of functionalized macrocycles to engage in multivalent interactions with proteins, and thus inhibit cellular aggregation.
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9
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Cai Y, Yu Q, Zhao H. Electrostatic assisted fabrication and dissociation of multi-component proteinosomes. J Colloid Interface Sci 2020; 576:90-98. [PMID: 32408164 DOI: 10.1016/j.jcis.2020.05.013] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 05/03/2020] [Accepted: 05/04/2020] [Indexed: 01/17/2023]
Abstract
Self-assembly of proteins into well-organized proteinosomes has attracted great interest due to the potential medical and biological applications of the structures. Herein, a new concept of electrostatic assisted fabrication of proteinosomes is proposed. The self-assembly is performed by using multi-step dialysis approach, where negatively charged bovine serum albumin-poly(N-isopropylacrylamide) (BSA-PNIPAM) bioconjugate and positively charged enzyme (lysozyme or trypsin) are initially dissolved in phosphate buffer (PB) solution at a high salt concentration, and subsequently the protein solution is dialyzed against PB solutions at low salt concentrations, resulting in the formation of biofunctional proteinosomes. Transmission electron microscopy (TEM), cryo-TEM and light scattering results all demonstrate the formation of hollow structures. The wall of a proteinosome is composed of BSA and enzyme (lysozyme or trypsin), and PNIPAM chains of the bioconjugate are in the corona stabilizing the structure. In comparison with the native enzymes, the enzyme molecules in the assemblies basically retain their bioactivities. The proteinosomes formed by BSA-PNIPAM and lysozyme can be dissociated in the presence of trypsin, and those self-assembled by BSA-PNIPAM and trypsin are able to be self-hydrolyzed, resulting in the dissociation of the structures in aqueous solution. The size and morphology changes of the proteinosomes in the hydrolysis are studied.
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Affiliation(s)
- Yaqian Cai
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry, Nankai University, Collaborative Innovation Center of Chemical Science and Engineering, Tianjin 300071, China
| | - Qianyu Yu
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry, Nankai University, Collaborative Innovation Center of Chemical Science and Engineering, Tianjin 300071, China
| | - Hanying Zhao
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry, Nankai University, Collaborative Innovation Center of Chemical Science and Engineering, Tianjin 300071, China.
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10
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Baldini L, Casnati A, Sansone F. Multivalent and Multifunctional Calixarenes in Bionanotechnology. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000255] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Laura Baldini
- Department of Chemistry Life Sciences and Environmental Sustainability University of Parma Parco Area delle Scienze, 17/a 43124 Parma Italy
| | - Alessandro Casnati
- Department of Chemistry Life Sciences and Environmental Sustainability University of Parma Parco Area delle Scienze, 17/a 43124 Parma Italy
| | - Francesco Sansone
- Department of Chemistry Life Sciences and Environmental Sustainability University of Parma Parco Area delle Scienze, 17/a 43124 Parma Italy
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11
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Gao C, Chen G. Exploring and Controlling the Polymorphism in Supramolecular Assemblies of Carbohydrates and Proteins. Acc Chem Res 2020; 53:740-751. [PMID: 32174104 DOI: 10.1021/acs.accounts.9b00552] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
In biology, polymorphism is a well-known phenomenon by which a discrete biomacromolecule can adopt multiple specific conformations in response to its environment. This term can be extended to the ability of biomacromolecules to pack into different ordered patterns. Thus, exploration and control of the polymorphism of biomacromolecules via supramolecular methods have been key steps in achieving bioinspired structures, developing bioinspired functional materials, and exploring the mechanisms of these self-assembly processes, which are models for more complex biological systems. This task could be difficult for proteins and carbohydrates due to the complicated multiple noncovalent interactions of these two species which can hardly be manipulated.In this account, dealing with the structural polymorphisms from biomacromolecular assemblies, we will first briefly comment on the problems that carbohydrate/protein assemblies are facing, and then on the basis of our long-term research on carbohydrate self-assemblies, we will summarize the new strategies that we have developed in our laboratory in recent years to explore and control the polymorphism of carbohydrate/protein assemblies.Considering the inherent ability of carbohydrates to recognize lectin, we proposed the "inducing ligand" strategy to assemble natural proteins into various nanostructures with highly ordered packing patterns. The newly developed inducing ligand approach opened a new window for protein assembly where dual noncovalent interactions (i.e., carbohydrate-protein interactions and dimerization of rhodamine) instead of the traditionally used protein-protein interactions direct the assembly pattern of proteins. As a result, various polymorphisms of protein assemblies have been constructed by simply changing the ligand chemical structure and/or the rhodamine dimerization.Another concept that we proposed for glycopolymer self-assembly is DISA (i.e., deprotection-induced glycopolymer self-assembly). It is well known that protection-deprotection chemistry has been employed to construct complex oligosaccharide structures. However, its application in glycopolymer self-assembly has been overlooked. We initiated this new strategy with diblock copolymers. Such copolymers with a carbohydrate block having protected pendent groups exist as single chains in organic media. The self-assembly can be initiated by the deprotection of the pendent groups. The process was nicely controlled by introducing various protective groups with different deprotection rates. Later on, the DISA process has been proven practical in water and even in the cellular environment, which opens a new avenue for the development of polymeric glycomaterials.Finally, the resultant polymeric glyco-materials, as a new type of biomimetic materials, provide a nice platform for investigating the functions of glycocalyx. The glycocalyx-mimicking nanoparticles achieved unprecedent functions which exceed their carbohydrate precursors. Here, the reversion of tumor-associated macrophages induced by glycocalyx-mimicking nanoparticles will be discussed with potential applications in cancer immunotherapy, where such a reversion effect could be combined with other methods (e.g., tumor checkpoint blockade).
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Affiliation(s)
- Chendi Gao
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200438, P. R. China
| | - Guosong Chen
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200438, P. R. China
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12
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Glutamine-induced filamentous cells of Pseudomonas mediterranea CFBP-5447T as producers of PHAs. Appl Microbiol Biotechnol 2019; 103:9057-9066. [DOI: 10.1007/s00253-019-10144-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Revised: 09/06/2019] [Accepted: 09/17/2019] [Indexed: 01/16/2023]
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13
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Zuttion F, Sicard D, Dupin L, Vergoten G, Girard-Bock C, Madaoui M, Chevolot Y, Morvan F, Vidal S, Vasseur JJ, Souteyrand E, Phaner-Goutorbe M. Deciphering multivalent glycocluster-lectin interactions through AFM characterization of the self-assembled nanostructures. SOFT MATTER 2019; 15:7211-7218. [PMID: 31475271 DOI: 10.1039/c9sm00371a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Pseudomonas aeruginosa is a human opportunistic pathogen responsible for lung infections in cystic fibrosis patients. The emergence of resistant strains and its ability to form a biofilm seem to give a selective advantage to the bacterium and thus new therapeutic approaches are needed. To infect the lung, the bacterium uses several virulence factors, like LecA lectins. These proteins are involved in bacterial adhesion due to their specific interaction with carbohydrates of the host epithelial cells. The tetrameric LecA lectin specifically binds galactose residues. A new therapeutic approach is based on the development of highly affine synthetic glycoclusters able to selectively link with LecA to interfere with the natural carbohydrate-LecA interaction. In this study, we combined atomic force microscopy imaging and molecular dynamics simulations to visualize and understand the arrangements formed by LecA and five different glycoclusters. Our glycoclusters are small scaffolds characterized by a core and four branches, which terminate in a galactose residue. Depending on the nature of the core and the branches, the glycocluster-lectin interaction can be modulated and the affinity increased. We show that glycocluster-LecA arrangements highly depend on the glycocluster architecture: the core influences the rigidity of the geometry and the directionality of the branches, whereas the nature of the branch determines the compactness of the structure and the ease of binding.
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Affiliation(s)
- Francesca Zuttion
- Université de Lyon, Ecole Centrale de Lyon, Institut des Nanotechnologies de Lyon INL UMR-5270 CNRS, 36 avenue Guy de Collongue, 69134 Ecully, France.
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14
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Sikder A, Ray D, Aswal VK, Ghosh S. Supramolecular Assembly of a Molecularly Engineered Protein and Polymer. Chemistry 2019; 25:10464-10471. [DOI: 10.1002/chem.201901844] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Indexed: 11/07/2022]
Affiliation(s)
- Amrita Sikder
- School of Applied and Interdisciplinary SciencesIndian Association for the Cultivation of Science Kolkata 700032 India
| | - Debes Ray
- Solid State Physics DivisionBhabha Atomic Research Centre Mumbai- 400085 India
| | - Vinod K. Aswal
- Solid State Physics DivisionBhabha Atomic Research Centre Mumbai- 400085 India
| | - Suhrit Ghosh
- School of Applied and Interdisciplinary SciencesIndian Association for the Cultivation of Science Kolkata 700032 India
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15
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Yu G, Thies‐Weesie DME, Pieters RJ. TetravalentPseudomonas aeruginosaAdhesion Lectin LecA Inhibitor for Enhanced Biofilm Inhibition. Helv Chim Acta 2019. [DOI: 10.1002/hlca.201900014] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Guangyun Yu
- Department of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical SciencesUtrecht University P.O.Box 80082 NL-3508 TB Utrecht The Netherlands
| | - Dominique M. E. Thies‐Weesie
- Van't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials ScienceUtrecht University Padualaan 8 NL-3584 CH Utrecht The Netherlands
| | - Roland J. Pieters
- Department of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical SciencesUtrecht University P.O.Box 80082 NL-3508 TB Utrecht The Netherlands
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16
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Kuan SL, Bergamini FRG, Weil T. Functional protein nanostructures: a chemical toolbox. Chem Soc Rev 2018; 47:9069-9105. [PMID: 30452046 PMCID: PMC6289173 DOI: 10.1039/c8cs00590g] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2018] [Indexed: 01/08/2023]
Abstract
Nature has evolved an optimal synthetic factory in the form of translational and posttranslational processes by which millions of proteins with defined primary sequences and 3D structures can be built. Nature's toolkit gives rise to protein building blocks, which dictates their spatial arrangement to form functional protein nanostructures that serve a myriad of functions in cells, ranging from biocatalysis, formation of structural networks, and regulation of biochemical processes, to sensing. With the advent of chemical tools for site-selective protein modifications and recombinant engineering, there is a rapid development to develop and apply synthetic methods for creating structurally defined, functional protein nanostructures for a broad range of applications in the fields of catalysis, materials and biomedical sciences. In this review, design principles and structural features for achieving and characterizing functional protein nanostructures by synthetic approaches are summarized. The synthetic customization of protein building blocks, the design and introduction of recognition units and linkers and subsequent assembly into structurally defined protein architectures are discussed herein. Key examples of these supramolecular protein nanostructures, their unique functions and resultant impact for biomedical applications are highlighted.
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Affiliation(s)
- Seah Ling Kuan
- Max-Planck Institute for Polymer Research
,
Ackermannweg 10
, 55128 Mainz
, Germany
.
;
- Institute of Inorganic Chemistry I – Ulm University
,
Albert-Einstein-Allee 11
, 89081 Ulm
, Germany
| | - Fernando R. G. Bergamini
- Institute of Chemistry
, Federal University of Uberlândia – UFU
,
38400-902 Uberlândia
, MG
, Brazil
| | - Tanja Weil
- Max-Planck Institute for Polymer Research
,
Ackermannweg 10
, 55128 Mainz
, Germany
.
;
- Institute of Inorganic Chemistry I – Ulm University
,
Albert-Einstein-Allee 11
, 89081 Ulm
, Germany
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17
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Lehot V, Brissonnet Y, Dussouy C, Brument S, Cabanettes A, Gillon E, Deniaud D, Varrot A, Le Pape P, Gouin SG. Multivalent Fucosides with Nanomolar Affinity for the
Aspergillus fumigatus
Lectin FleA Prevent Spore Adhesion to Pneumocytes. Chemistry 2018; 24:19243-19249. [DOI: 10.1002/chem.201803602] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Indexed: 11/06/2022]
Affiliation(s)
- Victor Lehot
- LUNAM UniversitéCEISAMUMR CNRS 6230UFR des Sciences et des Techniques 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Yoan Brissonnet
- LUNAM UniversitéCEISAMUMR CNRS 6230UFR des Sciences et des Techniques 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Christophe Dussouy
- LUNAM UniversitéCEISAMUMR CNRS 6230UFR des Sciences et des Techniques 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Sami Brument
- LUNAM UniversitéCEISAMUMR CNRS 6230UFR des Sciences et des Techniques 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | | | - Emilie Gillon
- Univ. Grenoble ALpesCNRS, CERMAV 38000 Grenoble France
| | - David Deniaud
- LUNAM UniversitéCEISAMUMR CNRS 6230UFR des Sciences et des Techniques 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | | | - Patrice Le Pape
- Laboratoire de Parasitologie-MycologieInstitut de Biologie, CHU Nantes Nantes France
| | - Sébastien G. Gouin
- LUNAM UniversitéCEISAMUMR CNRS 6230UFR des Sciences et des Techniques 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
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18
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Kašáková M, Malinovská L, Klejch T, Hlaváčková M, Dvořáková H, Fujdiarová E, Rottnerová Z, Maťátková O, Lhoták P, Wimmerová M, Moravcová J. Selectivity of original C-hexopyranosyl calix[4]arene conjugates towards lectins of different origin. Carbohydr Res 2018; 469:60-72. [DOI: 10.1016/j.carres.2018.08.012] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Revised: 08/01/2018] [Accepted: 08/19/2018] [Indexed: 02/05/2023]
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19
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Gulyuk AV, LaJeunesse DR, Collazo R, Ivanisevic A. Characterization of Pseudomonas aeruginosa Films on Different Inorganic Surfaces before and after UV Light Exposure. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:10806-10815. [PMID: 30122052 DOI: 10.1021/acs.langmuir.8b02079] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The changes of the surface properties of Au, GaN, and SiO x after UV light irradiation were used to actively influence the process of formation of Pseudomonas aeruginosa films. The interfacial properties of the substrates were characterized by X-ray photoelectron spectroscopy and atomic force microscopy. The changes in the P. aeruginosa film properties were accessed by analyzing adhesion force maps and quantifying the intracellular Ca2+ concentration. The collected analysis indicates that the alteration of the inorganic materials' surface chemistry can lead to differences in biofilm formation and variable response from P. aeruginosa cells.
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Affiliation(s)
- Alexey V Gulyuk
- Department of Materials Science and Engineering , North Carolina State University , Raleigh , North Carolina 27695 , United States
| | - Dennis R LaJeunesse
- Joint School of Nanoscience and Nanoengineering , University of North Carolina-Greensboro and North Carolina A&T State University , Greensboro , North Carolina 27401 , United States
| | - Ramon Collazo
- Department of Materials Science and Engineering , North Carolina State University , Raleigh , North Carolina 27695 , United States
| | - Albena Ivanisevic
- Department of Materials Science and Engineering , North Carolina State University , Raleigh , North Carolina 27695 , United States
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20
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Oda A, Nagao S, Yamanaka M, Ueda I, Watanabe H, Uchihashi T, Shibata N, Higuchi Y, Hirota S. Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an α-Helix-Inserted Circular Permutant of Cytochrome c
555. Chem Asian J 2018; 13:964-967. [DOI: 10.1002/asia.201800252] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Indexed: 01/11/2023]
Affiliation(s)
- Akiya Oda
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
| | - Satoshi Nagao
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
| | - Masaru Yamanaka
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
| | - Ikki Ueda
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
| | - Hiroki Watanabe
- Department of Physics; Nagoya University; Chikusa-ku Nagoya Aichi 464-8602 Japan
| | - Takayuki Uchihashi
- Department of Physics; Nagoya University; Chikusa-ku Nagoya Aichi 464-8602 Japan
| | - Naoki Shibata
- Department of Life Science; Graduate School of Life Science; University of Hyogo; 3-2-1 Koto Kamigori-cho, Ako-gun Hyogo 678-1297 Japan
- RIKEN SPring-8 Center; 1-1-1 Koto Sayo-cho Sayo-gun, Hyogo 679-5148 Japan
| | - Yoshiki Higuchi
- Department of Life Science; Graduate School of Life Science; University of Hyogo; 3-2-1 Koto Kamigori-cho, Ako-gun Hyogo 678-1297 Japan
- RIKEN SPring-8 Center; 1-1-1 Koto Sayo-cho Sayo-gun, Hyogo 679-5148 Japan
| | - Shun Hirota
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
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21
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Hu Y, Beshr G, Garvey CJ, Tabor RF, Titz A, Wilkinson BL. Photoswitchable Janus glycodendrimer micelles as multivalent inhibitors of LecA and LecB from Pseudomonas aeruginosa. Colloids Surf B Biointerfaces 2017; 159:605-612. [PMID: 28858663 DOI: 10.1016/j.colsurfb.2017.08.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Revised: 07/31/2017] [Accepted: 08/10/2017] [Indexed: 12/18/2022]
Abstract
The first example of the self-assembly and lectin binding properties of photoswitchable glycodendrimer micelles is reported. Light-addressable micelles were assembled from a library of 12 amphiphilic Janus glycodendrimers composed of variable carbohydrate head groups and hydrophobic tail groups linked to an azobenzene core. Spontaneous association in water gave cylindrical micelles with uniform size distribution as determined by dynamic light scattering (DLS) and small angle neutron scattering (SANS). Trans-cis photoisomerization of the azobenzene dendrimer core was used to probe the self-assembly behaviour and lectin binding properties of cylindrical micelles, revealing moderate-to-potent inhibition of lectins LecA and LecB from Pseudomonas aeruginosa.
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Affiliation(s)
- Yingxue Hu
- School of Chemistry, Monash University, Victoria 3800, Australia
| | - Ghamdan Beshr
- Chemical Biology of Carbohydrates, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), D-66123 Saarbrücken, Germany; Deutsches Zentrum für Infektionsforschung, Standort Hannover, Braunschweig, Germany
| | - Christopher J Garvey
- Australian Centre for Neutron scattering, ANSTO, Lucas Heights, New South Wales 2234, Australia
| | - Rico F Tabor
- School of Chemistry, Monash University, Victoria 3800, Australia
| | - Alexander Titz
- Chemical Biology of Carbohydrates, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), D-66123 Saarbrücken, Germany; Deutsches Zentrum für Infektionsforschung, Standort Hannover, Braunschweig, Germany
| | - Brendan L Wilkinson
- School of Science and Technology, the University of New England, New South Wales 2351, Australia.
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22
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Li X, Bai Y, Huang Z, Si C, Dong Z, Luo Q, Liu J. A highly controllable protein self-assembly system with morphological versatility induced by reengineered host-guest interactions. NANOSCALE 2017; 9:7991-7997. [PMID: 28574092 DOI: 10.1039/c7nr01612c] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Manipulating proteins to self-assemble into highly ordered nanostructures not only provides insights into the natural protein assembly process but also allows access to advanced biomaterials. Host-guest interactions have been widely used in the construction of artificial protein assemblies in recent years. CB[8] can selectively associate with two tripeptide Phe-Gly-Gly (FGG) tags with an extraordinarily high binding affinity (Kter = 1.5 × 1011 M-2). However, the FGG tags utilized before are all fixed to the N-termini via genetic fusion; this spatial limitation greatly confined the availability of the CB[8]/FGG pair in the construction of more sophisticated protein nanostructures. Here we first designed and synthesized a maleimide-functionalized Phe-Gly-Gly tag as a versatile site-specific protein modification tool; this designed tag can site-selectively introduce desired guest moieties onto protein surfaces for host-guest driven protein assembly. When regulating the self-assembly process of proteins and CB[8], the constructed protein nanosystem can exhibit distinctive morphological diversities ranging from nanorings, nanospirals, nanowires to superwires. This work developed a new strategy for site-specific protein modification of the CB[8] binding tag and provides a possible direction for the construction of 'smart', dynamic self-assembly systems.
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Affiliation(s)
- Xiumei Li
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
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23
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Yang G, Ding HM, Kochovski Z, Hu R, Lu Y, Ma YQ, Chen G, Jiang M. Highly Ordered Self-Assembly of Native Proteins into 1D, 2D, and 3D Structures Modulated by the Tether Length of Assembly-Inducing Ligands. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201703052] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Guang Yang
- The State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science and Collaborative Innovation Center of Genetics and Development; Fudan University; Shanghai 200433 China
| | - Hong-ming Ding
- Center for Soft Condensed Matter Physics and Interdisciplinary Research; Soochow University; Suzhou 215006 China
| | - Zdravko Kochovski
- Soft Matter and Functional Materials; Helmholtz-Zentrum Berlin für Materialien und Energie; 14109 Berlin Germany
| | - Rongting Hu
- The State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science and Collaborative Innovation Center of Genetics and Development; Fudan University; Shanghai 200433 China
| | - Yan Lu
- Soft Matter and Functional Materials; Helmholtz-Zentrum Berlin für Materialien und Energie; 14109 Berlin Germany
- Institute of Chemistry; University of Potsdam; 14476 Potsdam Germany
| | - Yu-qiang Ma
- Center for Soft Condensed Matter Physics and Interdisciplinary Research; Soochow University; Suzhou 215006 China
- National Laboratory of Solid State Microstructures and Department of Physics; Collaborative Innovation Center of Advanced Microstructures; Nanjing University; Nanjing 2 10093 China
| | - Guosong Chen
- The State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science and Collaborative Innovation Center of Genetics and Development; Fudan University; Shanghai 200433 China
| | - Ming Jiang
- The State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science and Collaborative Innovation Center of Genetics and Development; Fudan University; Shanghai 200433 China
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24
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Yang G, Ding HM, Kochovski Z, Hu R, Lu Y, Ma YQ, Chen G, Jiang M. Highly Ordered Self-Assembly of Native Proteins into 1D, 2D, and 3D Structures Modulated by the Tether Length of Assembly-Inducing Ligands. Angew Chem Int Ed Engl 2017; 56:10691-10695. [DOI: 10.1002/anie.201703052] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2017] [Indexed: 12/12/2022]
Affiliation(s)
- Guang Yang
- The State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science and Collaborative Innovation Center of Genetics and Development; Fudan University; Shanghai 200433 China
| | - Hong-ming Ding
- Center for Soft Condensed Matter Physics and Interdisciplinary Research; Soochow University; Suzhou 215006 China
| | - Zdravko Kochovski
- Soft Matter and Functional Materials; Helmholtz-Zentrum Berlin für Materialien und Energie; 14109 Berlin Germany
| | - Rongting Hu
- The State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science and Collaborative Innovation Center of Genetics and Development; Fudan University; Shanghai 200433 China
| | - Yan Lu
- Soft Matter and Functional Materials; Helmholtz-Zentrum Berlin für Materialien und Energie; 14109 Berlin Germany
- Institute of Chemistry; University of Potsdam; 14476 Potsdam Germany
| | - Yu-qiang Ma
- Center for Soft Condensed Matter Physics and Interdisciplinary Research; Soochow University; Suzhou 215006 China
- National Laboratory of Solid State Microstructures and Department of Physics; Collaborative Innovation Center of Advanced Microstructures; Nanjing University; Nanjing 2 10093 China
| | - Guosong Chen
- The State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science and Collaborative Innovation Center of Genetics and Development; Fudan University; Shanghai 200433 China
| | - Ming Jiang
- The State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science and Collaborative Innovation Center of Genetics and Development; Fudan University; Shanghai 200433 China
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25
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Angeli A, Li M, Dupin L, Vergoten G, Noël M, Madaoui M, Wang S, Meyer A, Géhin T, Vidal S, Vasseur JJ, Chevolot Y, Morvan F. Design and Synthesis of Galactosylated Bifurcated Ligands with Nanomolar Affinity for Lectin LecA from Pseudomonas aeruginosa. Chembiochem 2017; 18:1036-1047. [DOI: 10.1002/cbic.201700154] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2017] [Indexed: 01/05/2023]
Affiliation(s)
- Anthony Angeli
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université Montpellier; ENSCM; Place Eugène Bataillon CC1704 34095 Montpellier cedex 5 France
| | - Muchen Li
- Université de Lyon; Institut des Nanotechnologies de Lyon; INL); UMR CNRS 5270; Site Ecole Centrale de Lyon; 36 avenue Guy de Collongue 69134 Ecully cedex France
| | - Lucie Dupin
- Université de Lyon; Institut des Nanotechnologies de Lyon; INL); UMR CNRS 5270; Site Ecole Centrale de Lyon; 36 avenue Guy de Collongue 69134 Ecully cedex France
| | - Gérard Vergoten
- Unité de Glycobiologie Structurelle et Fonctionnelle; UGSF); UMR 8576 CNRS; Université de Lille 1; Cité Scientifique; Avenue Mendeleiev Bat. C9 59655 Villeneuve d'Ascq cedex France
| | - Mathieu Noël
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université Montpellier; ENSCM; Place Eugène Bataillon CC1704 34095 Montpellier cedex 5 France
| | - Mimouna Madaoui
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université Montpellier; ENSCM; Place Eugène Bataillon CC1704 34095 Montpellier cedex 5 France
| | - Shuai Wang
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires; Laboratoire de Chimie Organique 2; Glycochimie UMR 5246; CNRS; Université Claude Bernard Lyon 1; 43 Boulevard du 11 Novembre 1918 69622 Villeurbanne France
| | - Albert Meyer
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université Montpellier; ENSCM; Place Eugène Bataillon CC1704 34095 Montpellier cedex 5 France
| | - Thomas Géhin
- Université de Lyon; Institut des Nanotechnologies de Lyon; INL); UMR CNRS 5270; Site Ecole Centrale de Lyon; 36 avenue Guy de Collongue 69134 Ecully cedex France
| | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires; Laboratoire de Chimie Organique 2; Glycochimie UMR 5246; CNRS; Université Claude Bernard Lyon 1; 43 Boulevard du 11 Novembre 1918 69622 Villeurbanne France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université Montpellier; ENSCM; Place Eugène Bataillon CC1704 34095 Montpellier cedex 5 France
| | - Yann Chevolot
- Université de Lyon; Institut des Nanotechnologies de Lyon; INL); UMR CNRS 5270; Site Ecole Centrale de Lyon; 36 avenue Guy de Collongue 69134 Ecully cedex France
| | - François Morvan
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247; CNRS; Université Montpellier; ENSCM; Place Eugène Bataillon CC1704 34095 Montpellier cedex 5 France
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26
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Zheng S, Eierhoff T, Aigal S, Brandel A, Thuenauer R, de Bentzmann S, Imberty A, Römer W. The Pseudomonas aeruginosa lectin LecA triggers host cell signalling by glycosphingolipid-dependent phosphorylation of the adaptor protein CrkII. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2017; 1864:1236-1245. [PMID: 28428058 DOI: 10.1016/j.bbamcr.2017.04.005] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2016] [Revised: 04/11/2017] [Accepted: 04/12/2017] [Indexed: 12/16/2022]
Abstract
The human pathogen Pseudomonas aeruginosa induces phosphorylation of the adaptor protein CrkII by activating the non-receptor tyrosine kinase Abl to promote its uptake into host cells. So far, specific factors of P. aeruginosa, which induce Abl/CrkII signalling, are entirely unknown. In this research, we employed human lung epithelial cells H1299, Chinese hamster ovary cells and P. aeruginosa wild type strain PAO1 to study the invasion process of P. aeruginosa into host cells by using microbiological, biochemical and cell biological approaches such as Western Blot, immunofluorescence microscopy and flow cytometry. Here, we demonstrate that the host glycosphingolipid globotriaosylceramide, also termed Gb3, represents a signalling receptor for the P. aeruginosa lectin LecA to induce CrkII phosphorylation at tyrosine 221. Alterations in Gb3 expression and LecA function correlate with CrkII phosphorylation. Interestingly, phosphorylation of CrkIIY221 occurs independently of Abl kinase. We further show that Src family kinases transduce the signal induced by LecA binding to Gb3, leading to CrkY221 phosphorylation. In summary, we identified LecA as a bacterial factor, which utilizes a so far unrecognized mechanism for phospho-CrkIIY221 induction by binding to the host glycosphingolipid receptor Gb3. The LecA/Gb3 interaction highlights the potential of glycolipids to mediate signalling processes across the plasma membrane and should be further elucidated to gain deeper insights into this non-canonical mechanism of activating host cell processes.
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Affiliation(s)
- Shuangshuang Zheng
- Faculty of Biology, Schänzlestraβe 1, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Schänzlestraβe 18, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
| | - Thorsten Eierhoff
- Faculty of Biology, Schänzlestraβe 1, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Schänzlestraβe 18, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany.
| | - Sahaja Aigal
- Faculty of Biology, Schänzlestraβe 1, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Schänzlestraβe 18, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany; International Max Planck Research School for Molecular and Cellular Biology, Max Planck Institute of Immunobiology and Epigenetics, Stübeweg 51, 79108 Freiburg, Germany
| | - Annette Brandel
- Faculty of Biology, Schänzlestraβe 1, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Schänzlestraβe 18, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
| | - Roland Thuenauer
- Faculty of Biology, Schänzlestraβe 1, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Schänzlestraβe 18, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
| | - Sophie de Bentzmann
- Laboratoire d'Ingénierie des Systèmes Macromoléculaires, Institut de Microbiologie de la Méditerranée, Aix-Marseille Université, CNRS UMR7255, Marseille, France
| | - Anne Imberty
- Centre de Recherches sur les Macromolécules Végétales, UPR5301 CNRS and University of Grenoble Alpes, BP53, 38041 Grenoble cédex 09, France
| | - Winfried Römer
- Faculty of Biology, Schänzlestraβe 1, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Schänzlestraβe 18, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany; International Max Planck Research School for Molecular and Cellular Biology, Max Planck Institute of Immunobiology and Epigenetics, Stübeweg 51, 79108 Freiburg, Germany.
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27
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Luo Q, Hou C, Bai Y, Wang R, Liu J. Protein Assembly: Versatile Approaches to Construct Highly Ordered Nanostructures. Chem Rev 2016; 116:13571-13632. [PMID: 27587089 DOI: 10.1021/acs.chemrev.6b00228] [Citation(s) in RCA: 357] [Impact Index Per Article: 44.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Nature endows life with a wide variety of sophisticated, synergistic, and highly functional protein assemblies. Following Nature's inspiration to assemble protein building blocks into exquisite nanostructures is emerging as a fascinating research field. Dictating protein assembly to obtain highly ordered nanostructures and sophisticated functions not only provides a powerful tool to understand the natural protein assembly process but also offers access to advanced biomaterials. Over the past couple of decades, the field of protein assembly has undergone unexpected and rapid developments, and various innovative strategies have been proposed. This Review outlines recent advances in the field of protein assembly and summarizes several strategies, including biotechnological strategies, chemical strategies, and combinations of these approaches, for manipulating proteins to self-assemble into desired nanostructures. The emergent applications of protein assemblies as versatile platforms to design a wide variety of attractive functional materials with improved performances have also been discussed. The goal of this Review is to highlight the importance of this highly interdisciplinary field and to promote its growth in a diverse variety of research fields ranging from nanoscience and material science to synthetic biology.
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Affiliation(s)
- Quan Luo
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, P. R. China
| | - Chunxi Hou
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, P. R. China
| | - Yushi Bai
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, P. R. China
| | - Ruibing Wang
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau , Taipa, Macau SAR 999078, China
| | - Junqiu Liu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, P. R. China
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28
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Wang S, Dupin L, Noël M, Carroux CJ, Renaud L, Géhin T, Meyer A, Souteyrand E, Vasseur JJ, Vergoten G, Chevolot Y, Morvan F, Vidal S. Toward the Rational Design of Galactosylated Glycoclusters That Target Pseudomonas aeruginosa Lectin A (LecA): Influence of Linker Arms That Lead to Low-Nanomolar Multivalent Ligands. Chemistry 2016; 22:11785-94. [PMID: 27412649 DOI: 10.1002/chem.201602047] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Indexed: 02/03/2023]
Abstract
Anti-infectious strategies against pathogen infections can be achieved through antiadhesive strategies by using multivalent ligands of bacterial virulence factors. LecA and LecB are lectins of Pseudomonas aeruginosa implicated in biofilm formation. A series of 27 LecA-targeting glycoclusters have been synthesized. Nine aromatic galactose aglycons were investigated with three different linker arms that connect the central mannopyranoside core. A low-nanomolar (Kd =19 nm, microarray) ligand with a tyrosine-based linker arm could be identified in a structure-activity relationship study. Molecular modeling of the glycoclusters bound to the lectin tetramer was also used to rationalize the binding properties observed.
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Affiliation(s)
- Shuai Wang
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Lucie Dupin
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Mathieu Noël
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Cindy J Carroux
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Louis Renaud
- Institut des Nanotechnologies de Lyon, UMR CNRS 5270, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Thomas Géhin
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Albert Meyer
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Eliane Souteyrand
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Gérard Vergoten
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF) - UMR 8576, CNRS - Université de Lille 1, Cité Scientifique, Avenue Mendeleiev, Bat C9, 59655, Villeneuve d'Ascq cedex, France
| | - Yann Chevolot
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France.
| | - François Morvan
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France.
| | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France.
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29
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Yang G, Kochovski Z, Ji Z, Lu Y, Chen G, Jiang M. Three-dimensional protein assemblies directed by orthogonal non-covalent interactions. Chem Commun (Camb) 2016; 52:9687-90. [PMID: 27407068 DOI: 10.1039/c6cc04250c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
In this report, an orthogonal non-covalent interaction strategy based on specific recognition between sugar and protein, and host-guest interaction, was employed to construct artificial three dimensional (3D) protein assemblies in the laboratory.
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Affiliation(s)
- Guang Yang
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai, 200433, China.
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30
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Galanos N, Gillon E, Imberty A, Matthews SE, Vidal S. Pentavalent pillar[5]arene-based glycoclusters and their multivalent binding to pathogenic bacterial lectins. Org Biomol Chem 2016; 14:3476-81. [PMID: 26972051 DOI: 10.1039/c6ob00220j] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Anti-adhesive glycoclusters offer potential as therapeutic alternatives to classical antibiotics in treating infections. Pillar[5]arenes functionalised with either five galactose or five fucose residues were readily prepared using CuAAC reactions and evaluated for their binding to three therapeutically relevant bacterial lectins: LecA and Lec B from Pseudomonas aeuruginosa and BambL from Burkholderia ambifaria. Steric interactions were demonstrated to be a key factor in achieving good binding to LecA with more flexible galactose glycoclusters showing enhanced activity. In contrast binding to the fucose-selective lectins confirmed the importance of topology of the glycoclusters for activity with the pillar[5]arene ligand proving a selective ligand for BambL.
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Affiliation(s)
- Nicolas Galanos
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, F-6922 Villeurbanne, France.
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31
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Yang G, Zhang X, Kochovski Z, Zhang Y, Dai B, Sakai F, Jiang L, Lu Y, Ballauff M, Li X, Liu C, Chen G, Jiang M. Precise and Reversible Protein-Microtubule-Like Structure with Helicity Driven by Dual Supramolecular Interactions. J Am Chem Soc 2016; 138:1932-7. [PMID: 26799414 DOI: 10.1021/jacs.5b11733] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Protein microtubule is a significant self-assembled architecture found in nature with crucial biological functions. However, mimicking protein microtubules with precise structure and controllable self-assembly behavior remains highly challenging. In this work, we demonstrate that by using dual supramolecular interactions from a series of well-designed ligands, i.e., protein-sugar interaction and π-π stacking, highly homogeneous protein microtubes were achieved from tetrameric soybean agglutinin without any chemical or biological modification. Using combined cryo-EM single-particle reconstruction and computational modeling, the accurate structure of protein microtube was determined. The helical protein microtube is consisted of three protofilaments, each of which features an array of soybean agglutinin tetramer linked by the designed ligands. Notably, the microtubes resemble the natural microtubules in their structural and dynamic features such as the shape and diameter and the controllable and reversible assembly behavior, among others. Furthermore, the protein microtubes showed an ability to enhance immune response, demonstrating its great potential for biological applications.
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Affiliation(s)
- Guang Yang
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University , Shanghai 200433, China
| | - Xiang Zhang
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences , Shanghai 200032, China
| | - Zdravko Kochovski
- Soft Matter and Functional Materials, Helmholtz-Zentrum Berlin für Materialien und Energie , 14109 Berlin, Germany.,TEM Group, Institute of Physics, Humboldt-Universität zu Berlin , 12489 Berlin, Germany
| | - Yufei Zhang
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University , Shanghai 200433, China
| | - Bin Dai
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences , Shanghai 200032, China
| | - Fuji Sakai
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University , Shanghai 200433, China
| | - Lin Jiang
- Department of Neurology, Easton Center for Alzheimer's Disease Research, David Geffen School of Medicine, University of California , Los Angeles, California 90095, United States
| | - Yan Lu
- Soft Matter and Functional Materials, Helmholtz-Zentrum Berlin für Materialien und Energie , 14109 Berlin, Germany
| | - Matthias Ballauff
- Soft Matter and Functional Materials, Helmholtz-Zentrum Berlin für Materialien und Energie , 14109 Berlin, Germany
| | - Xueming Li
- Ministry of Education Key Laboratory of Protein Science, Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University , Beijing 100084, China
| | - Cong Liu
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences , Shanghai 200032, China
| | - Guosong Chen
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University , Shanghai 200433, China
| | - Ming Jiang
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University , Shanghai 200433, China
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32
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Buffet K, Nierengarten I, Galanos N, Gillon E, Holler M, Imberty A, Matthews SE, Vidal S, Vincent SP, Nierengarten JF. Pillar[5]arene-Based Glycoclusters: Synthesis and Multivalent Binding to Pathogenic Bacterial Lectins. Chemistry 2016; 22:2955-63. [PMID: 26845383 DOI: 10.1002/chem.201504921] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2015] [Indexed: 01/15/2023]
Abstract
The synthesis of pillar[5]arene-based glycoclusters has been readily achieved by CuAAC conjugations of azido- and alkyne-functionalized precursors. The lectin binding properties of the resulting glycosylated multivalent ligands have been studied by at least two complementary techniques to provide a good understanding. Three lectins were selected from bacterial pathogens based on their potential therapeutic applications as anti-adhesives, namely LecA and LecB from Pseudomonas aeruginosa and BambL from Burkholderia ambifaria. As a general trend, multivalency improved the binding to lectins and a higher affinity can be obtained by increasing to a certain limit the length of the spacer arm between the carbohydrate subunits and the central macrocyclic core.
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Affiliation(s)
- Kevin Buffet
- University of Namur (UNamur), Académie Louvain, Département de Chimie, Laboratoire de Chimie Bio-Organique, rue de Bruxelles 61, 5000, Belgium
| | - Iwona Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7509), Ecole Européenne de Chimie, Polymères et Matériaux (ECPM), 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Nicolas Galanos
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 6922, Villeurbanne, France.,CERMAV-CNRS, Université Grenoble Alpes, BP 53, 38041, Grenoble, France
| | - Emilie Gillon
- CERMAV-CNRS, Université Grenoble Alpes, BP 53, 38041, Grenoble, France
| | - Michel Holler
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7509), Ecole Européenne de Chimie, Polymères et Matériaux (ECPM), 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Anne Imberty
- CERMAV-CNRS, Université Grenoble Alpes, BP 53, 38041, Grenoble, France.
| | - Susan E Matthews
- School of Pharmacy, University of East Anglia, Norwich, NR4 7TJ, United Kingdom
| | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 6922, Villeurbanne, France.
| | - Stéphane P Vincent
- University of Namur (UNamur), Académie Louvain, Département de Chimie, Laboratoire de Chimie Bio-Organique, rue de Bruxelles 61, 5000, Belgium.
| | - Jean-François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7509), Ecole Européenne de Chimie, Polymères et Matériaux (ECPM), 25 rue Becquerel, 67087, Strasbourg Cedex 2, France.
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33
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Delbianco M, Bharate P, Varela-Aramburu S, Seeberger PH. Carbohydrates in Supramolecular Chemistry. Chem Rev 2015; 116:1693-752. [PMID: 26702928 DOI: 10.1021/acs.chemrev.5b00516] [Citation(s) in RCA: 191] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Carbohydrates are involved in a variety of biological processes. The ability of sugars to form a large number of hydrogen bonds has made them important components for supramolecular chemistry. We discuss recent advances in the use of carbohydrates in supramolecular chemistry and reveal that carbohydrates are useful building blocks for the stabilization of complex architectures. Systems are presented according to the scaffold that supports the glyco-conjugate: organic macrocycles, dendrimers, nanomaterials, and polymers are considered. Glyco-conjugates can form host-guest complexes, and can self-assemble by using carbohydrate-carbohydrate interactions and other weak interactions such as π-π interactions. Finally, complex supramolecular architectures based on carbohydrate-protein interactions are discussed.
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Affiliation(s)
- Martina Delbianco
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Priya Bharate
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1, 14476 Potsdam, Germany.,Institute of Chemistry and Biochemistry, Freie Universität Berlin , Arnimallee 22, 14195 Berlin, Germany
| | - Silvia Varela-Aramburu
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1, 14476 Potsdam, Germany.,Institute of Chemistry and Biochemistry, Freie Universität Berlin , Arnimallee 22, 14195 Berlin, Germany
| | - Peter H Seeberger
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1, 14476 Potsdam, Germany.,Institute of Chemistry and Biochemistry, Freie Universität Berlin , Arnimallee 22, 14195 Berlin, Germany
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34
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Dupin L, Zuttion F, Géhin T, Meyer A, Phaner-Goutorbe M, Vasseur JJ, Souteyrand E, Morvan F, Chevolot Y. Effects of the Surface Densities of Glycoclusters on the Determination of Their IC50andKdValue Determination by Using a Microarray. Chembiochem 2015; 16:2329-36. [DOI: 10.1002/cbic.201500371] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2015] [Indexed: 01/21/2023]
Affiliation(s)
- Lucie Dupin
- Institut des Nanotechnologies de Lyon (INL); UMR 5270 CNRS; Ecole Centrale de Lyon; Université de Lyon; 36 Avenue Guy de Collongue 69134 Ecully France
| | - Francesca Zuttion
- Institut des Nanotechnologies de Lyon (INL); UMR 5270 CNRS; Ecole Centrale de Lyon; Université de Lyon; 36 Avenue Guy de Collongue 69134 Ecully France
| | - Thomas Géhin
- Institut des Nanotechnologies de Lyon (INL); UMR 5270 CNRS; Ecole Centrale de Lyon; Université de Lyon; 36 Avenue Guy de Collongue 69134 Ecully France
| | - Albert Meyer
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247 CNRS; UM; ENSCM; Université de Montpellier; Place E. Bataillon CC1704 34095 Montpellier Cedex 5 France
| | - Magali Phaner-Goutorbe
- Institut des Nanotechnologies de Lyon (INL); UMR 5270 CNRS; Ecole Centrale de Lyon; Université de Lyon; 36 Avenue Guy de Collongue 69134 Ecully France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247 CNRS; UM; ENSCM; Université de Montpellier; Place E. Bataillon CC1704 34095 Montpellier Cedex 5 France
| | - Eliane Souteyrand
- Institut des Nanotechnologies de Lyon (INL); UMR 5270 CNRS; Ecole Centrale de Lyon; Université de Lyon; 36 Avenue Guy de Collongue 69134 Ecully France
| | - François Morvan
- Institut des Biomolécules Max Mousseron (IBMM); UMR 5247 CNRS; UM; ENSCM; Université de Montpellier; Place E. Bataillon CC1704 34095 Montpellier Cedex 5 France
| | - Yann Chevolot
- Institut des Nanotechnologies de Lyon (INL); UMR 5270 CNRS; Ecole Centrale de Lyon; Université de Lyon; 36 Avenue Guy de Collongue 69134 Ecully France
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35
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Ligeour C, Dupin L, Angeli A, Vergoten G, Vidal S, Meyer A, Souteyrand E, Vasseur JJ, Chevolot Y, Morvan F. Importance of topology for glycocluster binding to Pseudomonas aeruginosa and Burkholderia ambifaria bacterial lectins. Org Biomol Chem 2015; 13:11244-54. [PMID: 26412676 DOI: 10.1039/c5ob01445j] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Pseudomonas aeruginosa (PA) and Burkholderia ambifaria (BA) are two opportunistic Gram negative bacteria and major infectious agents involved in lung infection of cystic fibrosis patients. Both bacteria can develop resistance to conventional antibiotherapies. An alternative strategy consists of targeting virulence factors in particular lectins with high affinity ligands such as multivalent glycoclusters. LecA (PA-IL) and LecB (PA-IIL) are two tetravalent lectins from PA that recognise galactose and fucose respectively. BambL lectin from BA is trimeric with 2 binding sites per monomer and is also specific for fucose. These three lectins are potential therapeutic targets in an anti-adhesive anti-bacterial approach. Herein, we report the synthesis of 18 oligonucleotide pentofuranose-centered or mannitol-centered glycoclusters leading to tri-, penta- or decavalent clusters with different topologies. The linker arm length between the core and the carbohydrate epitope was also varied leading to 9 galactoclusters targeting LecA and 9 fucoclusters targeting both LecB and BambL. Their dissociation constants (Kd) were determined using a DNA-based carbohydrate microarray technology. The trivalent xylo-centered galactocluster and the ribo-centered fucocluster exhibited the best affinity for LecA and LecB respectively while the mannitol-centered decafucocluster displayed the best affinity to BambL. These data demonstrated that the topology and nature of linkers were the predominant factors for achieving high affinity rather than valency.
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Affiliation(s)
- Caroline Ligeour
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, Université de Montpellier, ENSCM, place Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France.
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36
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Schubert T, Römer W. How synthetic membrane systems contribute to the understanding of lipid-driven endocytosis. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2015. [PMID: 26211452 DOI: 10.1016/j.bbamcr.2015.07.014] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Synthetic membrane systems, such as giant unilamellar vesicles and solid supported lipid bilayers, have widened our understanding of biological processes occurring at or through membranes. Artificial systems are particularly suited to study the inherent properties of membranes with regard to their components and characteristics. This review critically reflects the emerging molecular mechanism of lipid-driven endocytosis and the impact of model membrane systems in elucidating the complex interplay of biomolecules within this process. Lipid receptor clustering induced by binding of several toxins, viruses and bacteria to the plasma membrane leads to local membrane bending and formation of tubular membrane invaginations. Here, lipid shape, and protein structure and valency are the essential parameters in membrane deformation. Combining observations of complex cellular processes and their reconstitution on minimal systems seems to be a promising future approach to resolve basic underlying mechanisms. This article is part of a Special Issue entitled: Mechanobiology.
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Affiliation(s)
- Thomas Schubert
- Faculty of Biology, Albert-Ludwigs-University Freiburg, Schänzlestraße 1, 79104 Freiburg, Germany; BIOSS - Centre for Biological Signalling Studies, Albert-Ludwigs-University Freiburg, Schänzlestraβe 18, 79104 Freiburg, Germany.
| | - Winfried Römer
- Faculty of Biology, Albert-Ludwigs-University Freiburg, Schänzlestraße 1, 79104 Freiburg, Germany; BIOSS - Centre for Biological Signalling Studies, Albert-Ludwigs-University Freiburg, Schänzlestraβe 18, 79104 Freiburg, Germany.
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37
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Yang X, Shang H, Ding C, Li J. Recent developments and applications of bioinspired dendritic polymers. Polym Chem 2015. [DOI: 10.1039/c4py01537a] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This review highlights the bioinspired applications of dendritic polymers, focusing on their structure–function relationship to natural biomolecules such as proteins.
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Affiliation(s)
- Xiao Yang
- College of Polymer Science and Engineering
- Sichuan University
- Chengdu 610065
- China
| | - Hui Shang
- College of Polymer Science and Engineering
- Sichuan University
- Chengdu 610065
- China
| | - Chunmei Ding
- College of Polymer Science and Engineering
- Sichuan University
- Chengdu 610065
- China
| | - Jianshu Li
- College of Polymer Science and Engineering
- Sichuan University
- Chengdu 610065
- China
- State Key Laboratory of Polymer Materials Engineering
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38
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Cecioni S, Imberty A, Vidal S. Glycomimetics versus Multivalent Glycoconjugates for the Design of High Affinity Lectin Ligands. Chem Rev 2014; 115:525-61. [DOI: 10.1021/cr500303t] [Citation(s) in RCA: 381] [Impact Index Per Article: 38.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Samy Cecioni
- CERMAV, Université Grenoble Alpes and CNRS, BP 53, F-38041 Grenoble Cedex 9, France
- Institut
de Chimie et Biochimie Moléculaires et Supramoléculaires,
Laboratoire de Chimie Organique 2 - Glycochimie, UMR 5246, Université Lyon 1 and CNRS, 43 Boulevard du 11 Novembre 1918, F-69622, Villeurbanne, France
| | - Anne Imberty
- CERMAV, Université Grenoble Alpes and CNRS, BP 53, F-38041 Grenoble Cedex 9, France
| | - Sébastien Vidal
- Institut
de Chimie et Biochimie Moléculaires et Supramoléculaires,
Laboratoire de Chimie Organique 2 - Glycochimie, UMR 5246, Université Lyon 1 and CNRS, 43 Boulevard du 11 Novembre 1918, F-69622, Villeurbanne, France
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39
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Boukerb AM, Rousset A, Galanos N, Méar JB, Thépaut M, Grandjean T, Gillon E, Cecioni S, Abderrahmen C, Faure K, Redelberger D, Kipnis E, Dessein R, Havet S, Darblade B, Matthews SE, de Bentzmann S, Guéry B, Cournoyer B, Imberty A, Vidal S. Antiadhesive properties of glycoclusters against Pseudomonas aeruginosa lung infection. J Med Chem 2014; 57:10275-89. [PMID: 25419855 DOI: 10.1021/jm500038p] [Citation(s) in RCA: 107] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Pseudomonas aeruginosa lung infections are a major cause of death in cystic fibrosis and hospitalized patients. Treating these infections is becoming difficult due to the emergence of conventional antimicrobial multiresistance. While monosaccharides have proved beneficial against such bacterial lung infection, the design of several multivalent glycosylated macromolecules has been shown to be also beneficial on biofilm dispersion. In this study, calix[4]arene-based glycoclusters functionalized with galactosides or fucosides have been synthesized. The characterization of their inhibitory properties on Pseudomonas aeruginosa aggregation, biofilm formation, adhesion on epithelial cells, and destruction of alveolar tissues were performed. The antiadhesive properties of the designed glycoclusters were demonstrated through several in vitro bioassays. An in vivo mouse model of lung infection provided an almost complete protection against Pseudomonas aeruginosa with the designed glycoclusters.
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Affiliation(s)
- Amine M Boukerb
- Equipe de Recherche, Bactéries Pathogènes Opportunistes et Environnement, UMR CNRS 5557 Ecologie Microbienne, Université Lyon 1 & VetAgro Sup , 43 Boulevard du 11 Novembre 1918, F-69622 Villeurbanne, France
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40
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Novoa A, Eierhoff T, Topin J, Varrot A, Barluenga S, Imberty A, Römer W, Winssinger N. A LecA Ligand Identified from a Galactoside-Conjugate Array Inhibits Host Cell Invasion byPseudomonas aeruginosa. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201402831] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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41
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Novoa A, Eierhoff T, Topin J, Varrot A, Barluenga S, Imberty A, Römer W, Winssinger N. A LecA ligand identified from a galactoside-conjugate array inhibits host cell invasion by Pseudomonas aeruginosa. Angew Chem Int Ed Engl 2014; 53:8885-9. [PMID: 25044671 DOI: 10.1002/anie.201402831] [Citation(s) in RCA: 74] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2014] [Revised: 04/24/2014] [Indexed: 11/06/2022]
Abstract
Lectin LecA is a virulence factor of Pseudomonas aeruginosa involved in lung injury, mortality, and cellular invasion. Ligands competing with human glycoconjugates for LecA binding are thus promising candidates to counteract P. aeruginosa infections. We have identified a novel divalent ligand from a focused galactoside(Gal)-conjugate array which binds to LecA with very high affinity (Kd = 82 nM). Crystal structures of LecA complexed with the ligand together with modeling studies confirmed its ability to chelate two binding sites of LecA. The ligand lowers cellular invasiveness of P. aeruginosa up to 90 % when applied in the range of 0.05-5 μM. Hence, this ligand might lead to the development of drugs against P. aeruginosa infection.
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Affiliation(s)
- Alexandre Novoa
- Department of Organic Chemistry, University of Geneva (Switzerland)
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42
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Oohora K, Hayashi T. Hemoprotein-based supramolecular assembling systems. Curr Opin Chem Biol 2014; 19:154-61. [PMID: 24658057 DOI: 10.1016/j.cbpa.2014.02.014] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Revised: 02/11/2014] [Accepted: 02/13/2014] [Indexed: 12/11/2022]
Abstract
Hemoproteins are metalloproteins which include iron porphyrin as a cofactor. These proteins have received much attention as promising building blocks for development of new types of biomaterials. This review summarizes recent efforts in the rational design of supramolecular hemoprotein assemblies using myoglobin, horseradish peroxidase, cytochrome b562 and cytochrome c as a monomer unit. The processes of coordination bond-mediated assembly or domain swapping-mediated assembly provide defined oligomers, while hemoprotein reconstitution with synthetic heme derivatives provides submicrometer-sized structures such as fibrils, vesicles/micelles, or networks. Interestingly, several of these assembled structures maintain the intrinsic functions of monomer units. The chemical and/or biological strategies described in this review will lead to the creation of unique hemoprotein-based functional biomaterials.
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Affiliation(s)
- Koji Oohora
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University Suita, 565-0871, Japan
| | - Takashi Hayashi
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University Suita, 565-0871, Japan.
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43
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Sicard D, Chevolot Y, Souteyrand E, Imberty A, Vidal S, Phaner-Goutorbe M. Molecular arrangement between multivalent glycocluster andPseudomonas aeruginosaLecA (PA-IL) by atomic force microscopy: influence of the glycocluster concentration. J Mol Recognit 2013; 26:694-9. [DOI: 10.1002/jmr.2333] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2013] [Revised: 10/08/2013] [Accepted: 10/11/2013] [Indexed: 11/11/2022]
Affiliation(s)
- D. Sicard
- Université de Lyon, Ecole Centrale de lyon; Institut des Nanotechnologies de Lyon (INL, UMR CNRS 5270); 36 avenue Guy de Collongue 69134 Ecully France
- Laboratoire Interdisciplinaire Carnot de Bourgogne (ICB UMR CNRS 6303) - Dept Nanosciences/OSNC, Faculty of Sciences Mirande; Université de Bourgogne; 9 Avenue A. Savary 21078 Dijon France
| | - Y. Chevolot
- Université de Lyon, Ecole Centrale de lyon; Institut des Nanotechnologies de Lyon (INL, UMR CNRS 5270); 36 avenue Guy de Collongue 69134 Ecully France
| | - E. Souteyrand
- Université de Lyon, Ecole Centrale de lyon; Institut des Nanotechnologies de Lyon (INL, UMR CNRS 5270); 36 avenue Guy de Collongue 69134 Ecully France
| | - A. Imberty
- CERMAV (CNRS, UPR 5301); Université Joseph Fourier; BP 53 38041 Grenoble France
| | - S. Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS, UMR CNRS 5246), Laboratoire de Chimie Organique 2-Glycochimie; Université de Lyon; 43 boulevard du 11 Novembre 1918 69622 Villeurbanne France
| | - M. Phaner-Goutorbe
- Université de Lyon, Ecole Centrale de lyon; Institut des Nanotechnologies de Lyon (INL, UMR CNRS 5270); 36 avenue Guy de Collongue 69134 Ecully France
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Brissonnet Y, Ortiz Mellet C, Morandat S, Garcia Moreno MI, Deniaud D, Matthews SE, Vidal S, Šesták S, El Kirat K, Gouin SG. Topological Effects and Binding Modes Operating with Multivalent Iminosugar-Based Glycoclusters and Mannosidases. J Am Chem Soc 2013; 135:18427-35. [DOI: 10.1021/ja406931w] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Yoan Brissonnet
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité,
Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR
des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
| | - Carmen Ortiz Mellet
- Departamento
de Química Orgánica, Facultad de Química, Universidad de Sevilla, C/Profesor García González no. 1, 41012 Sevilla, Spain
| | - Sandrine Morandat
- Laboratoire
de Génie Enzymatique et Cellulaire, FRE-CNRS 3580, Université de Technologie de Compiègne (UTC), BP 20529, 60205 Compiègne Cedex, France
| | - M. Isabel Garcia Moreno
- Departamento
de Química Orgánica, Facultad de Química, Universidad de Sevilla, C/Profesor García González no. 1, 41012 Sevilla, Spain
| | - David Deniaud
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité,
Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR
des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
| | - Susan E. Matthews
- School
of Pharmacy, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, United Kingdom
| | - Sébastien Vidal
- Institut
de Chimie et Biochimie Moléculaires et Supramoléculaires,
Laboratoire de Chimie Organique 2 Glycochimie, UMR 5246, CNRS, Université Claude Bernard Lyon 1, F-69622 Villeurbanne, France
| | - Sergej Šesták
- Institute
of Chemistry, Center for Glycomics, Slovak Academy of Sciences, Dúbravska cesta 9, 845 38 Bratislava, Slovakia
| | - Karim El Kirat
- Laboratoire
de Biomécanique et Bioingénierie, UMR-CNRS 7338, Université de Technologie de Compiègne (UTC), BP 20529, 60205 Compiègne Cedex, France
| | - Sébastien G. Gouin
- LUNAM Université, CEISAM, Chimie Et Interdisciplinarité,
Synthèse, Analyse, Modélisation, UMR CNRS 6230, UFR
des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
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45
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Gening ML, Titov DV, Cecioni S, Audfray A, Gerbst AG, Tsvetkov YE, Krylov VB, Imberty A, Nifantiev NE, Vidal S. Synthesis of Multivalent Carbohydrate-Centered Glycoclusters as Nanomolar Ligands of the Bacterial Lectin LecA from Pseudomonas aeruginosa. Chemistry 2013; 19:9272-85. [DOI: 10.1002/chem.201300135] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2013] [Revised: 04/17/2013] [Indexed: 12/19/2022]
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46
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Bernardi A, Jiménez-Barbero J, Casnati A, De Castro C, Darbre T, Fieschi F, Finne J, Funken H, Jaeger KE, Lahmann M, Lindhorst TK, Marradi M, Messner P, Molinaro A, Murphy PV, Nativi C, Oscarson S, Penadés S, Peri F, Pieters RJ, Renaudet O, Reymond JL, Richichi B, Rojo J, Sansone F, Schäffer C, Turnbull WB, Velasco-Torrijos T, Vidal S, Vincent S, Wennekes T, Zuilhof H, Imberty A. Multivalent glycoconjugates as anti-pathogenic agents. Chem Soc Rev 2013; 42:4709-27. [PMID: 23254759 PMCID: PMC4399576 DOI: 10.1039/c2cs35408j] [Citation(s) in RCA: 420] [Impact Index Per Article: 38.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Multivalency plays a major role in biological processes and particularly in the relationship between pathogenic microorganisms and their host that involves protein-glycan recognition. These interactions occur during the first steps of infection, for specific recognition between host and bacteria, but also at different stages of the immune response. The search for high-affinity ligands for studying such interactions involves the combination of carbohydrate head groups with different scaffolds and linkers generating multivalent glycocompounds with controlled spatial and topology parameters. By interfering with pathogen adhesion, such glycocompounds including glycopolymers, glycoclusters, glycodendrimers and glyconanoparticles have the potential to improve or replace antibiotic treatments that are now subverted by resistance. Multivalent glycoconjugates have also been used for stimulating the innate and adaptive immune systems, for example with carbohydrate-based vaccines. Bacteria present on their surfaces natural multivalent glycoconjugates such as lipopolysaccharides and S-layers that can also be exploited or targeted in anti-infectious strategies.
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Affiliation(s)
- Anna Bernardi
- Università di Milano, Dipartimento di Chimica Organica e Industriale and Centro di Eccellenza CISI, via Venezian 21, 20133 Milano, Italy
| | | | - Alessandro Casnati
- Università degli Studi di Parma, Dipartimento di Chimica, Parco Area delle Scienze 17/a, 43100 Parma, Italy
| | - Cristina De Castro
- Department of Chemical Sciences, Università di Napoli Federico II, Complesso Universitario Monte Santangelo, Via Cintia 4, I-80126 Napoli, Italy
| | - Tamis Darbre
- Department of Chemistry and Biochemistry, University of Berne, Freiestrasse 3, CH-3012, Berne, Switzerland
| | - Franck Fieschi
- Institut de Biologie Structurale, 41 rue Jules Horowitz, 38027 Grenoble Cedex 1, France
| | - Jukka Finne
- Department of Biosciences, University of Helsinki, P. O. Box 56, FI-00014 Helsinki, Finland
| | - Horst Funken
- Institute of Molecular Enzyme Technology, Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich, D-42425 Jülich, Germany
| | - Karl-Erich Jaeger
- Institute of Molecular Enzyme Technology, Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich, D-42425 Jülich, Germany
| | - Martina Lahmann
- School of Chemistry, Bangor University, Deiniol Road Bangor, Gwynedd LL57 2UW, UK
| | - Thisbe K. Lindhorst
- Otto Diels Institute of Organic Chemistry, Christiana Albertina University of Kiel, Otto-Hahn-Platz 3-4, D-24098 Kiel, Germany
| | - Marco Marradi
- Laboratory of GlycoNanotechnology, CIC biomaGUNE and CIBER-BBN, P1 de Miramón 182, 20009 San Sebastián, Spain
| | - Paul Messner
- Department of NanoBiotechnology, NanoGlycobiology Unit, University of Natural Resources and Life Sciences, Muthgasse 11, A-1190 Vienna, Austria
| | - Antonio Molinaro
- Department of Chemical Sciences, Università di Napoli Federico II, Complesso Universitario Monte Santangelo, Via Cintia 4, I-80126 Napoli, Italy
| | - Paul V. Murphy
- School of Chemistry, National University of Ireland, Galway, University Road, Galway, Ireland
| | - Cristina Nativi
- Dipartimento di Chimica, Universitá degli Studi di Firenze, Via della Lastruccia, 13, I-50019 Sesto Fiorentino – Firenze, Italy
| | - Stefan Oscarson
- Centre for Synthesis and Chemical Biology, UCD School of Chemistry and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland
| | - Soledad Penadés
- Laboratory of GlycoNanotechnology, CIC biomaGUNE and CIBER-BBN, P1 de Miramón 182, 20009 San Sebastián, Spain
| | - Francesco Peri
- Organic and Medicinal Chemistry, University of Milano-Bicocca, Piazza della Scienza, 2, 20126 Milano, Italy
| | - Roland J. Pieters
- Department of Medicinal Chemistry and Chemical Biology, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, P.O. Box 80082, 3508 TB Utrecht, The Netherlands
| | - Olivier Renaudet
- Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607, Université Joseph Fourier, BP53, 38041 Grenoble Cedex 9, France
| | - Jean-Louis Reymond
- Department of Chemistry and Biochemistry, University of Berne, Freiestrasse 3, CH-3012, Berne, Switzerland
| | - Barbara Richichi
- Dipartimento di Chimica, Universitá degli Studi di Firenze, Via della Lastruccia, 13, I-50019 Sesto Fiorentino – Firenze, Italy
| | - Javier Rojo
- Glycosystems Laboratory, Instituto de Investigaciones Químicas, CSIC – Universidad de Sevilla, Av. Américo Vespucio, 49, Seville 41092, Spain
| | - Francesco Sansone
- Università degli Studi di Parma, Dipartimento di Chimica, Parco Area delle Scienze 17/a, 43100 Parma, Italy
| | - Christina Schäffer
- Department of NanoBiotechnology, NanoGlycobiology Unit, University of Natural Resources and Life Sciences, Muthgasse 11, A-1190 Vienna, Austria
| | - W. Bruce Turnbull
- School of Chemistry and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK
| | | | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires UMR 5246, CNRS, Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, F-69622 Villeurbanne, France
| | - Stéphane Vincent
- University of Namur (FUNDP), Département de Chimie, Laboratoire de Chimie Bio-Organique, rue de Bruxelles 61, B-5000 Namur, Belgium
| | - Tom Wennekes
- Laboratory of Organic Chemistry, Wageningen University, Dreijenplein 8, 6703 HB Wageningen, The Netherlands
| | - Han Zuilhof
- Laboratory of Organic Chemistry, Wageningen University, Dreijenplein 8, 6703 HB Wageningen, The Netherlands
- Department of Chemical and Materials Engineering, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Anne Imberty
- Centre de Recherche sur les Macromolécules Végétales (CERMAV – CNRS), affiliated with Grenoble-Université and ICMG, F-38041 Grenoble, France
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47
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Sansone F, Casnati A. Multivalent glycocalixarenes for recognition of biological macromolecules: glycocalyx mimics capable of multitasking. Chem Soc Rev 2013; 42:4623-39. [DOI: 10.1039/c2cs35437c] [Citation(s) in RCA: 127] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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48
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Wittmann V, Pieters RJ. Bridging lectin binding sites by multivalent carbohydrates. Chem Soc Rev 2013; 42:4492-503. [DOI: 10.1039/c3cs60089k] [Citation(s) in RCA: 168] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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49
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Oohora K, Onoda A, Hayashi T. Supramolecular assembling systems formed by heme-heme pocket interactions in hemoproteins. Chem Commun (Camb) 2012; 48:11714-26. [PMID: 23079761 DOI: 10.1039/c2cc36376c] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A native protein in a biological system spontaneously produces large and elegant assemblies via self-assembly or assembly with various biomolecules which provide non-covalent interactions. In this context, the protein plays a key role in construction of a unique supramolecular structure operating as a functional system. Our group has recently highlighted the structure and function of hemoproteins reconstituted with artificially created heme analogs. The heme molecule is a replaceable cofactor of several hemoproteins. Here, we focus on the successive supramolecular protein assemblies driven by heme-heme pocket interactions to afford various examples of protein fibers, networks and three-dimensional clusters in which an artificial heme moiety is introduced onto the surface of a hemoprotein via covalent linkage and the native heme cofactor is removed from the heme pocket. This strategy is found to be useful for constructing hybrid materials with an electrode or with nanoparticles. The new systems described herein are expected to lead to the generation of various biomaterials with functions and characteristic physicochemical properties similar to those of hemoproteins.
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Affiliation(s)
- Koji Oohora
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Yamadaoka 2-1, Suita, Osaka, 565-0871, Japan
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50
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Cecioni S, Praly JP, Matthews SE, Wimmerová M, Imberty A, Vidal S. Rational Design and Synthesis of Optimized Glycoclusters for Multivalent Lectin-Carbohydrate Interactions: Influence of the Linker Arm. Chemistry 2012; 18:6250-63. [DOI: 10.1002/chem.201200010] [Citation(s) in RCA: 91] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2012] [Indexed: 12/14/2022]
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