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Nath R, Zaheen A, Rajkhowa S, Kar R. Polyphenolic metacyclophane as a radical scavenger for therapeutic activation: a computational study. Free Radic Res 2024; 58:476-492. [PMID: 39158168 DOI: 10.1080/10715762.2024.2394121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 07/30/2024] [Accepted: 08/04/2024] [Indexed: 08/20/2024]
Abstract
Modeling antioxidants for improved human health is a prime area of research. Inclusion complexes exhibit antioxidant activity. Supramolecular scaffolds like calixtyrosol are anticipated to have considerable antioxidant and therapeutic activity. In this study, we have designed 30 polyphenolic metacyclophanes and investigated their antioxidant properties. Exceptional O─H bond dissociation energy of 44 kcal/mol is reported for a metacyclophane with acyl urea linkage. This may be explained through a cooperative effect of localization of spin density distribution and an intramolecular hydrogen bonding of the corresponding radical. Further, the pharmacokinetics and toxicity analysis screened eight drug-like candidates. The interaction of the eight screened molecules with the Lysozyme transport protein and SOD protein has been studied using the molecular docking approach. Lastly, the MD simulations are performed to analyze the conformational changes of the transport protein after complexation with the proposed molecules. Comprehensive analyses including density functional studies of physiological parameters, favorable pharmacokinetics, toxicity, molecular docking, and MD simulations affirmed polyphenolic metacyclophane XXI as a radical scavenging and drug-like candidate.
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Affiliation(s)
- Raktim Nath
- Department of Chemistry, Dibrugarh University, Dibrugarh, India
| | - Alaiha Zaheen
- Centre for Biotechnology and Bioinformatics, Dibrugarh University, Dibrugarh, India
| | - Sanchaita Rajkhowa
- Centre for Biotechnology and Bioinformatics, Dibrugarh University, Dibrugarh, India
| | - Rahul Kar
- Department of Chemistry, Dibrugarh University, Dibrugarh, India
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2
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Rohman R, Kar R. Tuning the antioxidant property of potential calixdrug calix[4]tyrosol: role of aza and thia linkages. Struct Chem 2021. [DOI: 10.1007/s11224-021-01794-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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3
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Chen Y, Jiahui W, Xu H, Qianqian L, Jing J. Facial one-pot synthesis of D 3h symmetric bicyclocalix[2]arene[2]triazines and their layered comb self-assembly. JOURNAL OF SAUDI CHEMICAL SOCIETY 2018. [DOI: 10.1016/j.jscs.2017.11.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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4
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Zhang Q, Wang MX. Synthesis of hydroxylated azacalix[1]arene[3]pyridines from hydrolysis of high valent arylcopper complexes and conversion to a double azacalix[1]arene[3]pyridine host molecule. Org Chem Front 2017. [DOI: 10.1039/c6qo00669h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Arylcopper(ii) compounds reacted efficiently with KOH at ambient temperature to produce exclusively lower-rim-hydroxylated azacalix[1]arene[3]pyridines which underwent further CuCl2/TMEDA-catalyzed oxidative homocoupling to afford an unprecedented bisazacalix[1]phenol[3]pyridine host molecule.
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Affiliation(s)
- Qian Zhang
- Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry of Education)
- Department of Chemistry
- Tsinghua University
- Beijing 100084
- China
| | - Mei-Xiang Wang
- Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry of Education)
- Department of Chemistry
- Tsinghua University
- Beijing 100084
- China
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5
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Malytskyi V, da Silva VD, Siri O, Giorgi M, Raimundo JM. Versatile synthesis of tunable N,S-bridged-[1.1.1.1]-cyclophanes promoted by ester functions. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.08.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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6
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Zhang WZ, Ma H, Xiang GY, Luo J, Chung WS. Calix[4]arenes with Combined Axial Chirality and Inherent Chirality: Synthesis, Absolute Configuration and Chiral Recognition. ChemistrySelect 2016. [DOI: 10.1002/slct.201600709] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Wen-Zhen Zhang
- Tongji School of Pharmacy; Huazhong University of Science and Technology; No. 13 Hangkong Road Wuhan 430030 China
| | - Hui Ma
- Tongji School of Pharmacy; Huazhong University of Science and Technology; No. 13 Hangkong Road Wuhan 430030 China
| | - Guang-Ya Xiang
- Tongji School of Pharmacy; Huazhong University of Science and Technology; No. 13 Hangkong Road Wuhan 430030 China
| | - Jun Luo
- Tongji School of Pharmacy; Huazhong University of Science and Technology; No. 13 Hangkong Road Wuhan 430030 China
| | - Wen-Sheng Chung
- Department of Applied Chemistry; National Chiao Tung University; Hsinchu 30050 Taiwan, ROC
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7
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Xu H, Qian FJ, Wu QX, Xue M, Yang Y, Chen YX. Azacalix[2]arene[2]carbazoles: synthesis, structure and properties. RSC Adv 2016. [DOI: 10.1039/c6ra01197g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A new type of –NH– bridged azacalix[2]arene[2]carbazoles has been synthesized by aromatic nucleophilic substitution reactionviaone pot and/or fragment coupling strategy.
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Affiliation(s)
- Hui Xu
- School of Science
- Department of Chemistry
- Zhejiang Sci-Tech University
- Hangzhou 310018
- China
| | - Fang-Jun Qian
- School of Science
- Department of Chemistry
- Zhejiang Sci-Tech University
- Hangzhou 310018
- China
| | - Qiao-Xia Wu
- School of Science
- Department of Chemistry
- Zhejiang Sci-Tech University
- Hangzhou 310018
- China
| | - Min Xue
- School of Science
- Department of Physics
- Zhejiang Sci-Tech University
- Hangzhou 310018
- China
| | - Yong Yang
- School of Science
- Department of Chemistry
- Zhejiang Sci-Tech University
- Hangzhou 310018
- China
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8
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Wang F, Zhao L, You J, Wang MX. Synthesis of trifluoromethylthiolated azacalix[1]arene[3]pyridines from the Cu(ii)-mediated direct trifluoromethylthiolation reaction of arenes via reactive arylcopper(iii) intermediates. Org Chem Front 2016. [DOI: 10.1039/c6qo00161k] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cu(ii)-mediated arene C–H bond trifluoromethylthiolation with Me4NSCF3proceedsviaarylcopper(iii) intermediates to produce functionalized azacalix[1]arene[3]pyridine macrocycles.
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Affiliation(s)
- Fei Wang
- Key Laboratory of Green Chemistry and Technology (MOE)
- College of Chemistry
- Sichuan University
- Chengdu 610064
- China
| | - Liang Zhao
- Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry of Education)
- Department of Chemistry
- Tsinghua University
- Beijing 100084
- China
| | - Jingsong You
- Key Laboratory of Green Chemistry and Technology (MOE)
- College of Chemistry
- Sichuan University
- Chengdu 610064
- China
| | - Mei-Xiang Wang
- Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry of Education)
- Department of Chemistry
- Tsinghua University
- Beijing 100084
- China
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9
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Islam MM, Tomiyasu H, Matsumoto T, Tanaka J, Rahman S, Georghiou PE, Redshaw C, Yamato T. Synthesis and conformational studies of chiral macrocyclic [1.1.1]metacyclophanes containing benzofuran rings. Org Biomol Chem 2015. [DOI: 10.1039/c5ob01002k] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel hemisphere-shaped inherently chiral calixarene analogoue [1.1.1]metacyclophane containing both benzene and benzofuran rings was synthesized by fragment coupling approach.
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Affiliation(s)
- Md. Monarul Islam
- Department of Applied Chemistry
- Faculty of Science and Engineering
- Saga University
- Saga-shi
- Japan
| | - Hirotsugu Tomiyasu
- Department of Applied Chemistry
- Faculty of Science and Engineering
- Saga University
- Saga-shi
- Japan
| | - Taisuke Matsumoto
- Institute of Material Chemistry and Engineering
- Kyushu University
- Kasuga 816-8580
- Japan
| | - Junji Tanaka
- Institute of Material Chemistry and Engineering
- Kyushu University
- Kasuga 816-8580
- Japan
| | - Shofiur Rahman
- Department of Chemistry
- Memorial University of Newfoundland
- St. John's
- Canada
| | - Paris E. Georghiou
- Department of Chemistry
- Memorial University of Newfoundland
- St. John's
- Canada
| | - Carl Redshaw
- Department of Chemistry
- The University of Hull
- Hull
- UK
| | - Takehiko Yamato
- Department of Applied Chemistry
- Faculty of Science and Engineering
- Saga University
- Saga-shi
- Japan
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10
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Inherently Chiral Calix[5]arenes Incorporating an Axially Chiral Binaphthyl Moiety: Synthesis, Structures and Chiral Recognition. European J Org Chem 2014. [DOI: 10.1002/ejoc.201403298] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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11
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Naseer MM, Wang DX, Zhao L, Wang MX. Construction and Multiple Exterior Surface Functionalization of Giant Molecular Cages. European J Org Chem 2014. [DOI: 10.1002/ejoc.201402963] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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12
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Synthesis of functionalized azacalix[3]aromatics from azacalix[4]pyrimidine: unexpected macrocyclic transannular reactions. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.04.034] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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13
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Li JT, Wang LX, Wang DX, Zhao L, Wang MX. Synthesis, Resolution, Structure, and Racemization of Inherently Chiral 1,3-Alternate Azacalix[4]pyrimidines: Quantification of Conformation Mobility. J Org Chem 2014; 79:2178-88. [DOI: 10.1021/jo500054v] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Jiang-Tao Li
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
| | - Li-Xia Wang
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
| | - De-Xian Wang
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
| | - Liang Zhao
- Key
Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology
(Ministry of Education), Tsinghua University, Beijing 100084, People’s Republic of China
| | - Mei-Xiang Wang
- Key
Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology
(Ministry of Education), Tsinghua University, Beijing 100084, People’s Republic of China
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14
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Zukerman-Schpector J, Tiekink ERT. On the role of DMSO-O(lone pair)⋯π(arene), DMSO-S(lone pair)⋯π(arene) and SO⋯π(arene) interactions in the crystal structures of dimethyl sulphoxide (DMSO) solvates. CrystEngComm 2014. [DOI: 10.1039/c4ce00305e] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
DMSO-O(lone pair)⋯π(arene), DMSO-S(lone pair)⋯π(arene) and SO⋯π(arene) interactions are found in DMSO solvates.
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Affiliation(s)
- Julio Zukerman-Schpector
- Laboratório de Cristalografia
- Estereodinâmica e Modelagem Molecular
- Departamento de Química
- Universidade Federal de São Carlos
- São Carlos, Brazil
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15
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Li SZ, Yang K, Liu HB, Xia YX, Zhu RX, Luo J, Wan Q. Inherently chiral biscalixarene cone–cone conformers consisting of calix[4]arene and calix[5]arene subunits. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.08.091] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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16
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Yang C, Chen Y, Wang DX, Zhao L, Wang MX. Synthesis of Electron-Deficient Oxacalix[2]arene[2]triazines and Their Isomeric Analogs from a One-Pot Reaction of Perfluorinated Dihydroxybenzenes with Dichlorotriazines. Org Lett 2013; 15:4414-7. [DOI: 10.1021/ol401959d] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chi Yang
- The Key Laboratory of Bioorganic Phosphorous Chemistry & Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, China, and Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Yin Chen
- The Key Laboratory of Bioorganic Phosphorous Chemistry & Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, China, and Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - De-Xian Wang
- The Key Laboratory of Bioorganic Phosphorous Chemistry & Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, China, and Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Liang Zhao
- The Key Laboratory of Bioorganic Phosphorous Chemistry & Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, China, and Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Mei-Xiang Wang
- The Key Laboratory of Bioorganic Phosphorous Chemistry & Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, China, and Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
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17
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Barba V, Ramos P, Jiménez D, Rivera A, Meneses A. Calixarene and hemicarcerand-like compounds obtained by self-assembly of 3-aminophenylboronic acid and salicylaldehyde derivatives. Inorganica Chim Acta 2013. [DOI: 10.1016/j.ica.2013.02.033] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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18
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Pan S, Wang DX, Zhao L, Wang MX. Synthesis and Functionalization of Inherently Chiral Tetraoxacalix[2]arene[2]pyridines. Org Lett 2012; 14:6254-7. [DOI: 10.1021/ol303019q] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Shuai Pan
- Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
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19
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Pan S, Wang DX, Zhao L, Wang MX. Syntheses and conformational structures of functionalized tetraoxacalix[2]arene[2]triazines. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.08.069] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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20
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Bizier NP, Vernamonti JP, Katz JL. Single-Step, Regioselective Synthesis of Diazadioxacalix[4]arenes and Diazadioxa[14]cyclophanes Bearing an Alternating N/O-Bridge Pattern. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200137] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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21
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Unsymmetrical N and/or O-bridged calixarene derivatives: synthesis, structure and encapsulation of solvent molecules in the solid state. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2011.12.099] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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