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Fioretto L, Gallo C, Mercogliano M, Ziaco M, Nuzzo G, d'Ippolito G, Follero O, DellaGreca M, Giaccio P, Nittoli V, Ambrosino C, Sordino P, Soluri A, Soluri A, Massari R, D'Amelio M, De Palma R, Fontana A, Manzo E. BODIPY-Based Analogue of the TREM2-Binding Molecular Adjuvant Sulfavant A, a Chemical Tool for Imaging and Tracking Biological Systems. Anal Chem 2024; 96:3362-3372. [PMID: 38348659 DOI: 10.1021/acs.analchem.3c04322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2024]
Abstract
Recently, we described synthetic sulfolipids named Sulfavants as a novel class of molecular adjuvants based on the sulfoquinovosyl-diacylglycerol skeleton. The members of this family, Sulfavant A (1), Sulfavant R (2), and Sulfavant S (3), showed important effects on triggering receptor expressed on myeloid cells 2 (TREM2)-induced differentiation and maturation of human dendritic cells (hDC), through a novel cell mechanism underlying the regulation of the immune response. As these molecules are involved in biological TREM2-mediated processes crucial for cell survival, here, we report the synthesis and application of a fluorescent analogue of Sulfavant A bearing the 4,4-difluoro-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacene moiety (Me4-BODIPY). The fluorescent derivative, named PB-SULF A (4), preserving the biological activity of Sulfavants, opens the way to chemical biology and cell biology experiments to better understand the interactions with cellular and in vivo organ targets and to improve our comprehension of complex molecular mechanisms underlying the not fully understood ligand-induced TREM2 activity.
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Affiliation(s)
- Laura Fioretto
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
| | - Carmela Gallo
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
| | - Marcello Mercogliano
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
- Department of Chemical Sciences, University of Naples Federico II, Via Cinthia 4, 80136 Napoli, Italy
| | - Marcello Ziaco
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
| | - Genoveffa Nuzzo
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
| | - Giuliana d'Ippolito
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
| | - Olimpia Follero
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
| | - Marina DellaGreca
- Department of Chemical Sciences, University of Naples Federico II, Via Cinthia 4, 80136 Napoli, Italy
| | - Paolo Giaccio
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, Athens 15771, Greece
| | - Valeria Nittoli
- Biogem, Istituto di Biologia e Genetica Molecolare, Via Camporeale, 83031 Ariano Irpino, Avellino, Italy
| | - Concetta Ambrosino
- Biogem, Istituto di Biologia e Genetica Molecolare, Via Camporeale, 83031 Ariano Irpino, Avellino, Italy
- Department of Science and Technology, University of Sannio, 82100 Benevento, Italy
- IEOS-CNR, 80131 Naples, Italy
| | - Paolo Sordino
- Department of Biology and Evolution of Marine Organisms, Sicily Marine Centre, Stazione Zoologica Anton Dohrn, via Consolare Pompea 29, 98167 Messina,Italy
| | - Alessandro Soluri
- National Research Council of Italy (CNR), c/o International Campus "A. Buzzati-Traverso″, Institute of Biochemistry and Cell Biology (IBBC), Via E. Ramarini, 32, Monterotondo Scalo, 00015 Rome, Italy
| | - Andrea Soluri
- National Research Council of Italy (CNR), c/o International Campus "A. Buzzati-Traverso″, Institute of Biochemistry and Cell Biology (IBBC), Via E. Ramarini, 32, Monterotondo Scalo, 00015 Rome, Italy
- Department of Medicine and Surgery, Unit of Molecular Neurosciences, University Campus Bio-Medico, via Álvaro del Portillo 21, 00128 Rome, Italy
| | - Roberto Massari
- National Research Council of Italy (CNR), c/o International Campus "A. Buzzati-Traverso″, Institute of Biochemistry and Cell Biology (IBBC), Via E. Ramarini, 32, Monterotondo Scalo, 00015 Rome, Italy
| | - Marcello D'Amelio
- Department of Medicine and Surgery, Unit of Molecular Neurosciences, University Campus Bio-Medico, via Álvaro del Portillo 21, 00128 Rome, Italy
- Department of Experimental Neurosciences, IRCCS Santa Lucia Foundation, Via del Fosso di Fiorano, 64, 00143 Rome, Italy
| | - Raffaele De Palma
- Clinica di Medicina Interna, Immunologia Clinica e Medicina Traslazionale, Ospedale San Martino, Largo Rosanna Benzi 10, 16132 Genova,Italy
| | - Angelo Fontana
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
- Department of Biology, University of Naples "Federico II″, via Cinthia, Bldg.7, 80126 Naples, Italy
| | - Emiliano Manzo
- Institute of Biomolecular Chemistry (CNR), Via Campi Flegrei 34, 80078 Pozzuoli, Napoli , Italy
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Socrier L, Sharma A, Chen T, Flato K, Kettelhoit K, Enderlein J, Werz DB, Steinem C. Fluorophore position of headgroup-labeled Gb 3 glycosphingolipids in lipid bilayers. Biophys J 2023; 122:4104-4112. [PMID: 37735870 PMCID: PMC10598288 DOI: 10.1016/j.bpj.2023.09.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 08/28/2023] [Accepted: 09/18/2023] [Indexed: 09/23/2023] Open
Abstract
Fluorescent lipid probes are an invaluable tool for investigating lipid membranes. In particular, localizing certain receptor lipids such as glycosphingolipids within phase-separated membranes is of pivotal interest to understanding the influence of protein-receptor lipid binding on membrane organization. However, fluorescent labeling can readily alter the phase behavior of a lipid membrane because of the interaction of the fluorescent moiety with the membrane interface. Here, we investigated Gb3 glycosphingolipids, serving as receptor lipids for the protein Shiga toxin, with a headgroup attached BODIPY fluorophore separated by a polyethylene glycol (PEG) spacer of different lengths. We found that the diffusion coefficients of the fluorescently labeled Gb3 species in 1,2-dioleoyl-sn-glycero-3-phosphocholine/Gb3 (98:2, n/n) supported lipid bilayers are unaltered by the PEG spacer length. However, quenching as well as graphene-induced energy transfer experiments indicated that the length of the PEG spacer (n = 3 and n = 13) alters the position of the BODIPY fluorophore. In particular, the graphene-induced energy transfer technique provided accurate end-to-end distances between the fluorophores in the two leaflets of the bilayer thus enabling us to quantify the distance between the membrane interface and the fluorophore with sub-nanometer resolution. The spacer with three oligo ethylene glycol groups positioned the BODIPY fluorophore directly at the membrane interface favoring its interaction with the bilayer and thus may disturb lipid packing. However, the longer PEG spacer (n = 13) separated the BODIPY moiety from the membrane surface by 1.5 nm.
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Affiliation(s)
- Larissa Socrier
- Max-Planck-Institute for Dynamics and Self-Organization, Göttingen, Germany
| | - Akshita Sharma
- III. Institute of Physics - Biophysics, Georg-August-Universität, Göttingen, Germany
| | - Tao Chen
- III. Institute of Physics - Biophysics, Georg-August-Universität, Göttingen, Germany
| | - Kira Flato
- Institute of Organic and Biomolecular Chemistry, Georg-August-Universität, Göttingen, Germany
| | | | - Jörg Enderlein
- III. Institute of Physics - Biophysics, Georg-August-Universität, Göttingen, Germany
| | - Daniel B Werz
- Institute of Organic Chemistry, Albert-Ludwigs-Universität, Freiburg, Germany
| | - Claudia Steinem
- Max-Planck-Institute for Dynamics and Self-Organization, Göttingen, Germany; Institute of Organic and Biomolecular Chemistry, Georg-August-Universität, Göttingen, Germany.
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Lipid Driven Nanodomains in Giant Lipid Vesicles are Fluid and Disordered. Sci Rep 2017; 7:5460. [PMID: 28710349 PMCID: PMC5511215 DOI: 10.1038/s41598-017-05539-y] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 05/30/2017] [Indexed: 11/30/2022] Open
Abstract
It is a fundamental question in cell biology and biophysics whether sphingomyelin (SM)- and cholesterol (Chol)- driven nanodomains exist in living cells and in model membranes. Biophysical studies on model membranes revealed SM and Chol driven micrometer-sized liquid-ordered domains. Although the existence of such microdomains has not been proven for the plasma membrane, such lipid mixtures have been often used as a model system for ‘rafts’. On the other hand, recent super resolution and single molecule results indicate that the plasma membrane might organize into nanocompartments. However, due to the limited resolution of those techniques their unambiguous characterization is still missing. In this work, a novel combination of Förster resonance energy transfer and Monte Carlo simulations (MC-FRET) identifies directly 10 nm large nanodomains in liquid-disordered model membranes composed of lipid mixtures containing SM and Chol. Combining MC-FRET with solid-state wide-line and high resolution magic angle spinning NMR as well as with fluorescence correlation spectroscopy we demonstrate that these nanodomains containing hundreds of lipid molecules are fluid and disordered. In terms of their size, fluidity, order and lifetime these nanodomains may represent a relevant model system for cellular membranes and are closely related to nanocompartments suggested to exist in cellular membranes.
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Bernardino de la Serna J, Schütz GJ, Eggeling C, Cebecauer M. There Is No Simple Model of the Plasma Membrane Organization. Front Cell Dev Biol 2016; 4:106. [PMID: 27747212 PMCID: PMC5040727 DOI: 10.3389/fcell.2016.00106] [Citation(s) in RCA: 96] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Accepted: 09/14/2016] [Indexed: 12/29/2022] Open
Abstract
Ever since technologies enabled the characterization of eukaryotic plasma membranes, heterogeneities in the distributions of its constituents were observed. Over the years this led to the proposal of various models describing the plasma membrane organization such as lipid shells, picket-and-fences, lipid rafts, or protein islands, as addressed in numerous publications and reviews. Instead of emphasizing on one model we in this review give a brief overview over current models and highlight how current experimental work in one or the other way do not support the existence of a single overarching model. Instead, we highlight the vast variety of membrane properties and components, their influences and impacts. We believe that highlighting such controversial discoveries will stimulate unbiased research on plasma membrane organization and functionality, leading to a better understanding of this essential cellular structure.
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Affiliation(s)
- Jorge Bernardino de la Serna
- Science and Technology Facilities Council, Rutherford Appleton Laboratory, Central Laser Facility, Research Complex at Harwell Harwell, UK
| | - Gerhard J Schütz
- Institute of Applied Physics, Technische Universität Wien Wien, Austria
| | - Christian Eggeling
- MRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford Headley Way, UK
| | - Marek Cebecauer
- Department of Biophysical Chemistry, J.Heyrovsky Institute of Physical Chemistry, Czech Academy of Sciences Prague, Czech Republic
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Bacalum M, Wang L, Boodts S, Yuan P, Leen V, Smisdom N, Fron E, Knippenberg S, Fabre G, Trouillas P, Beljonne D, Dehaen W, Boens N, Ameloot M. A Blue-Light-Emitting BODIPY Probe for Lipid Membranes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:3495-3505. [PMID: 27003513 DOI: 10.1021/acs.langmuir.6b00478] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Here we describe a new BODIPY-based membrane probe (1) that provides an alternative to dialkylcarbocyanine dyes, such as DiI-C18, that can be excited in the blue spectral region. Compound 1 has unbranched octadecyl chains at the 3,5-positions and a meso-amino function. In organic solvents, the absorption and emission maxima of 1 are determined mainly by solvent acidity and dipolarity. The fluorescence quantum yield is high and reaches 0.93 in 2-propanol. The fluorescence decays are well fitted with a single-exponential in pure solvents and in small and giant unilamellar vesicles (GUV) with a lifetime of ca. 4 ns. Probe 1 partitions in the same lipid phase as DiI-C18(5) for lipid mixtures containing sphingomyelin and for binary mixtures of dipalmitoylphosphatidylcholine (DPPC) and dioleoylphosphatidylcholine (DOPC). The lipid phase has no effect on the fluorescence lifetime but influences the fluorescence anisotropy. The translational diffusion coefficients of 1 in GUVs and OLN-93 cells are of the same order as those reported for DiI-C18. The directions of the absorption and emission transition dipole moments of 1 are calculated to be parallel. This is reflected in the high steady-state fluorescence anisotropy of 1 in high ordered lipid phases. Molecular dynamic simulations of 1 in a model of the DOPC bilayer indicate that the average angle of the transition moments with respect to membrane normal is ca. 70°, which is comparable with the value reported for DiI-C18.
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Affiliation(s)
- Mihaela Bacalum
- Biomedical Research Institute, Hasselt University , Agoralaan Building C, 3590, Diepenbeek, Belgium
- Department of Life and Environmental Physics, Horia Hulubei National Institute for Physics and Nuclear Engineering , Reactorului 30, Măgurele, 077125, Romania
| | - Lina Wang
- Department of Chemistry, Katholieke Universiteit Leuven (KU Leuven) , Celestijnenlaan 200f - bus 02404, 3001 Leuven, Belgium
| | - Stijn Boodts
- Department of Chemistry, Katholieke Universiteit Leuven (KU Leuven) , Celestijnenlaan 200f - bus 02404, 3001 Leuven, Belgium
| | - Peijia Yuan
- Department of Chemistry, Katholieke Universiteit Leuven (KU Leuven) , Celestijnenlaan 200f - bus 02404, 3001 Leuven, Belgium
| | - Volker Leen
- Department of Chemistry, Katholieke Universiteit Leuven (KU Leuven) , Celestijnenlaan 200f - bus 02404, 3001 Leuven, Belgium
| | - Nick Smisdom
- Biomedical Research Institute, Hasselt University , Agoralaan Building C, 3590, Diepenbeek, Belgium
| | - Eduard Fron
- Department of Chemistry, Katholieke Universiteit Leuven (KU Leuven) , Celestijnenlaan 200f - bus 02404, 3001 Leuven, Belgium
| | - Stefan Knippenberg
- Biomedical Research Institute, Hasselt University , Agoralaan Building C, 3590, Diepenbeek, Belgium
- Division of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, School of Biotechnology , Roslagstullsbacken 15, S-106 91 Stockholm, Sweden
| | - Gabin Fabre
- LCSN-EA1069, Faculté de Pharmacie, Université de Limoges , 2, rue du Dr. Marcland, 87025 Limoges Cedex, France
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University , tř. 17 listopadu 12, 771 46 Olomouc, Czech Republic
| | - Patrick Trouillas
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University , tř. 17 listopadu 12, 771 46 Olomouc, Czech Republic
- INSERM UMR-S850, Faculté de Pharmacie, Université de Limoges , 2 rue du Docteur Marcland, 87025 Limoges Cedex, France
- Service de Chimie des Matériaux Nouveaux, Université de Mons , Place du Parc 20, B-7000 Mons, Belgium
| | - David Beljonne
- Service de Chimie des Matériaux Nouveaux, Université de Mons , Place du Parc 20, B-7000 Mons, Belgium
| | - Wim Dehaen
- Department of Chemistry, Katholieke Universiteit Leuven (KU Leuven) , Celestijnenlaan 200f - bus 02404, 3001 Leuven, Belgium
| | - Noël Boens
- Department of Chemistry, Katholieke Universiteit Leuven (KU Leuven) , Celestijnenlaan 200f - bus 02404, 3001 Leuven, Belgium
| | - Marcel Ameloot
- Biomedical Research Institute, Hasselt University , Agoralaan Building C, 3590, Diepenbeek, Belgium
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Kepczynski M, Róg T. Functionalized lipids and surfactants for specific applications. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2016; 1858:2362-2379. [PMID: 26946243 DOI: 10.1016/j.bbamem.2016.02.038] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2016] [Revised: 02/23/2016] [Accepted: 02/25/2016] [Indexed: 12/17/2022]
Abstract
Synthetic lipids and surfactants that do not exist in biological systems have been used for the last few decades in both basic and applied science. The most notable applications for synthetic lipids and surfactants are drug delivery, gene transfection, as reporting molecules, and as support for structural lipid biology. In this review, we describe the potential of the synergistic combination of computational and experimental methodologies to study the behavior of synthetic lipids and surfactants embedded in lipid membranes and liposomes. We focused on select cases in which molecular dynamics simulations were used to complement experimental studies aiming to understand the structure and properties of new compounds at the atomistic level. We also describe cases in which molecular dynamics simulations were used to design new synthetic lipids and surfactants, as well as emerging fields for the application of these compounds. This article is part of a Special Issue entitled: Biosimulations edited by Ilpo Vattulainen and Tomasz Róg.
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Affiliation(s)
- Mariusz Kepczynski
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland.
| | - Tomasz Róg
- Department of Physics, Tampere University of Technology, P.O. Box 692, FI-33101, Tampere, Finland; Department of Physics, Helsinki University, P.O. Box 64, FI 00014 Helsinki, Finland.
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Dürr UH, Soong R, Ramamoorthy A. When detergent meets bilayer: birth and coming of age of lipid bicelles. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2013; 69:1-22. [PMID: 23465641 PMCID: PMC3741677 DOI: 10.1016/j.pnmrs.2013.01.001] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2012] [Accepted: 08/30/2012] [Indexed: 05/12/2023]
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Štefl M, Šachl R, Humpolíčková J, Cebecauer M, Macháň R, Kolářová M, Johansson LBÅ, Hof M. Dynamics and size of cross-linking-induced lipid nanodomains in model membranes. Biophys J 2012; 102:2104-13. [PMID: 22824274 DOI: 10.1016/j.bpj.2012.03.054] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2012] [Revised: 03/21/2012] [Accepted: 03/23/2012] [Indexed: 01/05/2023] Open
Abstract
Changes of membrane organization upon cross-linking of its components trigger cell signaling response to various exogenous factors. Cross-linking of raft gangliosides GM1 with cholera toxin (CTxB) was shown to cause microscopic phase separation in model membranes, and the CTxB-GM1 complexes forming a minimal lipid raft unit are the subject of ongoing cell membrane research. Yet, those subdiffraction sized rafts have never been described in terms of size and dynamics. By means of two-color z-scan fluorescence correlation spectroscopy, we show that the nanosized domains are formed in model membranes at lower sphingomyelin (Sph) content than needed for the large-scale phase separation and that the CTxB-GM1 complexes are confined in the domains poorly stabilized with Sph. Förster resonance energy transfer together with Monte Carlo modeling of the donor decay response reveal the domain radius of ~8 nm, which increases at higher Sph content. We observed two types of domains behaving differently, which suggests a dual role of the cross-linker: first, local transient condensation of the GM1 molecules compensating for a lack of Sph and second, coalescence of existing nanodomains ending in large-scale phase separation.
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Affiliation(s)
- Martin Štefl
- Department of Biophysical Chemistry, J. Heyrovsky Institute of Physical Chemistry of the Academy of Sciences of the Czech Republic, Dolejškova, Prague, Czech Republic
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