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Yamaguchi A, Saiga M, Inaba D, Aizawa M, Shibuya Y, Itoh T. Structural Characterization of Proteins Adsorbed at Nanoporous Materials. ANAL SCI 2021; 37:49-59. [PMID: 33431779 DOI: 10.2116/analsci.20sar05] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 09/19/2020] [Indexed: 11/23/2022]
Abstract
A nanoporous material has been applied for the development of functional nanobiomaterials by utilizing its uniform pore structure and large adsorption capacity. The structure and stability of biomacromolecules, such as peptide, oligonucleotide, and protein, are primary factors to govern the performance of nanobiomaterials, so that their direct characterization methodologies are in progress. In this review, we focus on recent topics in the structural characterization of protein molecules adsorbed at a nanoporous material with uniform meso-sized pores. The thermal stabilities of the adsorbed proteins are also summarized to discuss whether the structure of the adsorbed protein molecules can be stabilized or not.
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Affiliation(s)
- Akira Yamaguchi
- Institute of Quantum Beam Science, Ibaraki University, 2-1-1, Bunkyo, Mito, Ibaraki, 310-8512, Japan.
| | - Masahiro Saiga
- Institute of Quantum Beam Science, Ibaraki University, 2-1-1, Bunkyo, Mito, Ibaraki, 310-8512, Japan
| | - Daiki Inaba
- Institute of Quantum Beam Science, Ibaraki University, 2-1-1, Bunkyo, Mito, Ibaraki, 310-8512, Japan
| | - Mami Aizawa
- Institute of Quantum Beam Science, Ibaraki University, 2-1-1, Bunkyo, Mito, Ibaraki, 310-8512, Japan
| | - Yuta Shibuya
- New Industry Creation Hatchery Center, Tohoku University, 2-1-1 Katahira, Aoba, Sendai, 980-8577, Japan
| | - Tetsuji Itoh
- National Institute of Advanced Industrial Science and Technology (AIST), 4-2-1 Nigatake, Miyagino, Sendai, 983-8551, Japan
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Lipase immobilization on ceramic supports: An overview on techniques and materials. Biotechnol Adv 2020; 42:107581. [DOI: 10.1016/j.biotechadv.2020.107581] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 06/17/2020] [Accepted: 06/18/2020] [Indexed: 02/08/2023]
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Ye Q, Chen K, Yang X, Xiao K, Shen Y. Facile and moderate immobilization of proteases on SPS nanospheres for the active collagen peptides. Food Chem 2020; 335:127610. [PMID: 32738532 DOI: 10.1016/j.foodchem.2020.127610] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Revised: 06/20/2020] [Accepted: 07/16/2020] [Indexed: 10/23/2022]
Abstract
Although collagen peptides have been proved to possess wide applications in functional foods, cosmetics, medical materials and pharmaceuticals, the production of collagen peptides are deeply affected by proteases and substrate. In this study, the scalable-synthesis sulfonated polystyrene (SPS) nanospheres were utilized as accessible supports for efficient subtilisin immobilization. Detailed characterizations through SEM-EDS, TEM, TGA and FT-IR confirmed the undamaged formation of the SPS-subtilisin. Owing to the moderate hydrophobic effect and electrostatic interaction, the SPS-subtilisin could achieve 397.15 mg/g enzyme loading and 77.3% activity recovery. The tilapia skin collagen, as a resource-rich raw material, was hydrolyzed by the prepared immobilized subtilisin. The antioxidant activity of the attained peptides was verified. With the mass spectrometry and molecular docking analysis of product peptides sequences, representative peptides were synthesized and their anti-oxidation capacity and mechanism were affirmed, which further verified the undiminished catalytic ability of immobilized subtilisin.
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Affiliation(s)
- Qianqian Ye
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Kai Chen
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Xiaocui Yang
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Kaijun Xiao
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Yi Shen
- College of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China.
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Zdarta J, Pinelo M, Jesionowski T, Meyer AS. Upgrading of Biomass Monosaccharides by Immobilized Glucose Dehydrogenase and Xylose Dehydrogenase. ChemCatChem 2018. [DOI: 10.1002/cctc.201801335] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Jakub Zdarta
- Institute of Chemical Technology and Engineering Faculty of Chemical Technology Poznan University of Technology Berdychowo 4 Poznan 60965 Poland
- Center for BioProcess Engineering Department of Chemical and Biochemical Engineering Technical University of Denmark Soltofts Plads 229 Lyngby 2800 Denmark
| | - Manuel Pinelo
- Center for BioProcess Engineering Department of Chemical and Biochemical Engineering Technical University of Denmark Soltofts Plads 229 Lyngby 2800 Denmark
| | - Teofil Jesionowski
- Institute of Chemical Technology and Engineering Faculty of Chemical Technology Poznan University of Technology Berdychowo 4 Poznan 60965 Poland
| | - Anne S. Meyer
- Center for BioProcess Engineering Department of Chemical and Biochemical Engineering Technical University of Denmark Soltofts Plads 229 Lyngby 2800 Denmark
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Bolivar JM, Eisl I, Nidetzky B. Advanced characterization of immobilized enzymes as heterogeneous biocatalysts. Catal Today 2016. [DOI: 10.1016/j.cattod.2015.05.004] [Citation(s) in RCA: 129] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Liu J, Yang Q, Li C. Towards efficient chemical synthesis via engineering enzyme catalysis in biomimetic nanoreactors. Chem Commun (Camb) 2015. [PMID: 26208044 DOI: 10.1039/c5cc04590h] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Biocatalysis with immobilized enzymes as catalysts holds enormous promise in developing more efficient and sustainable processes for the synthesis of fine chemicals, chiral pharmaceuticals and biomass feedstocks. Despite the appealing potentials, nowadays the industrial-scale application of biocatalysts is still quite modest in comparison with that of traditional chemical catalysts. A critical issue is that the catalytic performance of enzymes, the sophisticated and vulnerable catalytic machineries, strongly depends on their intracellular working environment; however the working circumstances provided by the support matrix are radically different from those in cells. This often leads to various adverse consequences on enzyme conformation and dynamic properties, consequently decreasing the overall performance of immobilized enzymes with regard to their activity, selectivity and stability. Engineering enzyme catalysis in support nanopores by mimicking the physiological milieu of enzymes in vivo and investigating how the interior microenvironment of nanopores imposes an influence on enzyme behaviors in vitro are of paramount significance to modify and improve the catalytic functions of immobilized enzymes. In this feature article, we have summarized the recent advances in mimicking the working environment and working patterns of intracellular enzymes in nanopores of mesoporous silica-based supports. Especially, we have demonstrated that incorporation of polymers into silica nanopores could be a valuable approach to create the biomimetic microenvironment for enzymes in the immobilized state.
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Affiliation(s)
- Jia Liu
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
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Esmaeilnejad-Ahranjani P, Kazemeini M, Singh G, Arpanaei A. Amine-functionalized magnetic nanocomposite particles for efficient immobilization of lipase: effects of functional molecule size on properties of the immobilized lipase. RSC Adv 2015. [DOI: 10.1039/c5ra02471d] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The size of functional molecules influences the immobilization efficiency and properties of lipase immobilized on amine-functionalized magnetite–silica nanocomposite particles.
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Affiliation(s)
- Parvaneh Esmaeilnejad-Ahranjani
- Department of Industrial and Environmental Biotechnology
- National Institute of Genetic Engineering and Biotechnology
- Tehran
- Iran
- Department of Chemical and Petroleum Engineering
| | - Mohammad Kazemeini
- Department of Chemical and Petroleum Engineering
- Sharif University of Technology
- Tehran
- Iran
| | - Gurvinder Singh
- Department of Chemical Engineering
- Norwegian University of Science and Technology
- Trondheim
- Norway
| | - Ayyoob Arpanaei
- Department of Industrial and Environmental Biotechnology
- National Institute of Genetic Engineering and Biotechnology
- Tehran
- Iran
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Carlsson N, Gustafsson H, Thörn C, Olsson L, Holmberg K, Åkerman B. Enzymes immobilized in mesoporous silica: a physical-chemical perspective. Adv Colloid Interface Sci 2014; 205:339-60. [PMID: 24112562 DOI: 10.1016/j.cis.2013.08.010] [Citation(s) in RCA: 150] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2013] [Revised: 08/27/2013] [Accepted: 08/28/2013] [Indexed: 01/13/2023]
Abstract
Mesoporous materials as support for immobilized enzymes have been explored extensively during the last two decades, primarily not only for biocatalysis applications, but also for biosensing, biofuels and enzyme-controlled drug delivery. The activity of the immobilized enzymes inside the pores is often different compared to that of the free enzymes, and an important challenge is to understand how the immobilization affects the enzymes in order to design immobilization conditions that lead to optimal enzyme activity. This review summarizes methods that can be used to understand how material properties can be linked to changes in enzyme activity. Real-time monitoring of the immobilization process and techniques that demonstrate that the enzymes are located inside the pores is discussed by contrasting them to the common practice of indirectly measuring the depletion of the protein concentration or enzyme activity in the surrounding bulk phase. We propose that pore filling (pore volume fraction occupied by proteins) is the best standard for comparing the amount of immobilized enzymes at the molecular level, and present equations to calculate pore filling from the more commonly reported immobilized mass. Methods to detect changes in enzyme structure upon immobilization and to study the microenvironment inside the pores are discussed in detail. Combining the knowledge generated from these methodologies should aid in rationally designing biocatalyst based on enzymes immobilized in mesoporous materials.
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Affiliation(s)
- Nils Carlsson
- Chalmers University of Technology, Department of Chemical and Biological Engineering, Physical Chemistry, 412 96 Gothenburg, Sweden
| | - Hanna Gustafsson
- Chalmers University of Technology, Department of Chemical and Biological Engineering, Applied Surface Chemistry, 412 96 Gothenburg, Sweden
| | - Christian Thörn
- Chalmers University of Technology, Department of Chemical and Biological Engineering, Industrial Biotechnology, 412 96 Gothenburg, Sweden
| | - Lisbeth Olsson
- Chalmers University of Technology, Department of Chemical and Biological Engineering, Industrial Biotechnology, 412 96 Gothenburg, Sweden
| | - Krister Holmberg
- Chalmers University of Technology, Department of Chemical and Biological Engineering, Applied Surface Chemistry, 412 96 Gothenburg, Sweden.
| | - Björn Åkerman
- Chalmers University of Technology, Department of Chemical and Biological Engineering, Physical Chemistry, 412 96 Gothenburg, Sweden
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Masuda Y, Kugimiya SI, Kawachi Y, Kato K. Interparticle mesoporous silica as an effective support for enzyme immobilisation. RSC Adv 2014. [DOI: 10.1039/c3ra46122j] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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10
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Nakanishi K, Tomita M, Kato K. Improvement in the catalytic activity of cytochrome c by immobilisation on a novel mesoporous silica sheet. RSC Adv 2014. [DOI: 10.1039/c3ra45861j] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Masuda Y, Kugimiya SI, Kawachi Y, Kato K. Enhancement of Cost-effectiveness and Activity of Formaldehyde Dehydrogenase by Immobilization onto Mesoporous Silica with an Interparticle Pore Structure. CHEM LETT 2013. [DOI: 10.1246/cl.130556] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yuichi Masuda
- Materials Chemistry Course, Graduate School of Engineering, Aichi Institute of Technology
- National Institute of Advanced Industrial Science and Technology (AIST)
| | - Shin-ichi Kugimiya
- Materials Chemistry Course, Graduate School of Engineering, Aichi Institute of Technology
| | - Yuki Kawachi
- Materials Chemistry Course, Graduate School of Engineering, Aichi Institute of Technology
- National Institute of Advanced Industrial Science and Technology (AIST)
| | - Katsuya Kato
- Materials Chemistry Course, Graduate School of Engineering, Aichi Institute of Technology
- National Institute of Advanced Industrial Science and Technology (AIST)
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Temoçin Z. Covalent immobilization of Candida rugosa lipase on aldehyde functionalized hydrophobic support and the application for synthesis of oleic acid ester. JOURNAL OF BIOMATERIALS SCIENCE-POLYMER EDITION 2013; 24:1618-35. [DOI: 10.1080/09205063.2013.786970] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Zülfikar Temoçin
- a Department of Chemistry , Kırıkkale University , Kırıkkale , Turkey
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Murai K, Higuchi M, Kinoshita T, Nagata K, Kato K. Design of a nanocarrier with regulated drug release ability utilizing a reversible conformational transition of a peptide, responsive to slight changes in pH. Phys Chem Chem Phys 2013; 15:11454-60. [DOI: 10.1039/c3cp50916h] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Masuda Y, Kugimiya SI, Murai K, Hayashi A, Kato K. Enhancement of activity and stability of the formaldehyde dehydrogenase by immobilizing onto phenyl-functionalized mesoporous silica. Colloids Surf B Biointerfaces 2013; 101:26-33. [DOI: 10.1016/j.colsurfb.2012.05.037] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2012] [Revised: 05/25/2012] [Accepted: 05/30/2012] [Indexed: 10/28/2022]
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Orita T, Tomita M, Harada M, Kato K. Binding activity of avidin to the biotin within mesoporous silica materials for bioanalytical applications. Anal Biochem 2012; 425:1-9. [DOI: 10.1016/j.ab.2012.02.037] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2011] [Revised: 02/26/2012] [Accepted: 02/27/2012] [Indexed: 11/25/2022]
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