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Sarkar M, Rajasekar P, Jose C, Boomishankar R. Polyanionic Imido-P(V) Ligands: From Transition Metal Complexes to Coordination Driven Self-Assemblies. CHEM REC 2021; 22:e202100281. [PMID: 34962082 DOI: 10.1002/tcr.202100281] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Revised: 12/03/2021] [Indexed: 11/11/2022]
Abstract
The chemistry of the imido-anions of the main group elements has been studied for more than three decades. The imido (NR)- group is isoelectronic to the oxo (=O) group and can coordinate with metal ions through its lone pairs of electrons. The polyimido-P(V) anions are well explored as they resemble the phosphorus oxo moieties such as H3 PO4 , H2 PO4 - , HPO4 2- and PO4 3- species. These imido anions are typically generated using strong main group organometallic reagents such as n BuLi, Et2 Zn, Me3 Al and n Bu2 Mg, etc. As a result, their coordination chemistry has been restricted to reactions in anhydrous aprotic solvents for a few main group metal ions. This account presents our findings on using certain soft transition metal such Ag(I) and Pd (II) for isolating these imido-P(V) anions as their corresponding self-assembled clusters and cages. Using the various salts of Ag(I) ions in reaction with 2-pyridyl (2 Py) functionalized phosphonium salts and phosphoric triamides, we obtained the mono- and dianionic form of these imido ligands {[P(N2 Py)2 (NH2 Py)2 ]- , [P(N2 Py)2 (NH2 Py)]- , [PO(N2 Py)(NH2 Py)2 ]2- } and derived interesting examples of tri, penta, hepta and octanuclear Ag(I) clusters. Interestingly, by using the salts of Pd (II) ions, the elusive imido-phosphate trianions of the type [(RN)3 PO]3- (R=t Bu, c Hex, i Pr) were generated in a facile one pot reaction as their corresponding tri- and hexanuclear clusters of the type {Pd3 [(NR)3 PO](OAc)3 }n (n=1 or 2). These trianions acts as a cis-coordinated hexadentate ligand for a trinuclear Pd (II) cluster and serve as the polyhedral building units for constructing hitherto unknown family of neutral cages in tetrahedral {Pd3 [(Ni Pr)3 PO]4 (L)6 } and cubic {Pd3 [(Ni Pr)3 PO]8 (L)12 } structures in the presence of suitable linker ligands (L2- ). These cages show interesting host-guest chemistry and post-assembly reactions. Remarkably, by employing chiral tris(imido)phosphate trianions, enantiopure chiral cages of the type [(Pd3 X*)4 (L)6 ], ([X*]3- =RRR- or SSS-[PO(N(*CH(CH3 )Ph)3 ]3- ), were synthesized and used for the chiral-recognition and enantio-separation of small racemic guest molecules. Some of these chiral cages were also shown to exhibit polyradical framework structures. In future, these and other similar types of cages are envisioned as potential molecular vessels for performing the reactions in their confined environment. The enantiomeric cages can be probed for asymmetric catalysis and the separation of a range of small chiral molecules.
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Affiliation(s)
- Meghamala Sarkar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India
| | - Prabhakaran Rajasekar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India
| | - Cavya Jose
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India
| | - Ramamoorthy Boomishankar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India.,Centre for Energy Science, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India
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Sebghati M, Tarahhomi A, Bozorgvar MS, Dumitrescu DG, van der Lee A. Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives. RSC Adv 2021; 11:8178-8197. [PMID: 35423343 PMCID: PMC8695197 DOI: 10.1039/d0ra10539b] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 02/01/2021] [Indexed: 01/22/2023] Open
Abstract
The crystalline forms of tris(pyridin-2-yl)phosphoric triamide, OP[NH-2Py]3 were investigated using single crystal X-ray diffraction, both as a metal complex [Co{(O)P[NH-2Py]2[NH-2PyH]}2]Cl3, compound 1, and as the purely organic pseudopolymorphs, the pure/anhydrate OP[NH-2Py]3, 2, monohydrate 2OP[NH-2Py]3·H2O, 3 and solvate 2OP[NH-2Py]3·2DMF·H2O, 4, respectively. An improved model of the metal organic framework (MOF) structure of Cu(ii)O6 {[Cu(OCHO)3][(CH3)2NH2]} n , 5 is also reported. Compound 1 is the first example of a discrete chelate phosphoric triamide (PT) complex with an [N]3P(O)-based backbone which in the PT compound acts as a flexible tridentate ligand. The structures 1, 3 and 4 crystallize in the monoclinic space group P21/n, while the anhydrous form 2 crystallizes in the R3̄ trigonal space group. 5 which was obtained as a byproduct of the synthesis process of coordination compounds of OP[NH-2Py]3, crystallizes in the monoclinic space group I2/c. Hydrogen bonding pattern analysis for the different solid state forms of OP[NH-2Py]3 (2-4) shows a 2D sheet of the N-H⋯N linked molecules for 2, and a 1D chain and a ten-membered ring motif, both formed via the hydrogen bonds N-H⋯O, N-H⋯N and O-H⋯O, for 3 and 4, respectively. Of note is the unusual absence of the expected hydrogen bond interaction N-H⋯O[double bond, length as m-dash]P of PT compounds and also a lack of any significant π interactions in structure 2. The role of the solvent/hydrate and substituent (aminopyridine) in the formation of the expected hydrogen bond interactions in the studied solid state forms is also investigated. For these structures, crystal packing analysis using 3D Hirshfeld surface (HS), 2D fingerprint plot (FP) and enrichment ratio (E) calculations confirm a competition between the pyridinyl nitrogen and phosphoryl oxygen atoms as H-bond acceptors to construct the N-H⋯N or N-H⋯O contacts. Moreover, the significant differences between the anhydrous form of OP[NH-2Py]3, 2, and the monohydrate and solvate forms, 3 and 4, can be correlated to the pseudo-infinite (in 2) versus finite values (in 3 and 4) for the upper values of d e and d i on the related full FPs.
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Affiliation(s)
- Marjan Sebghati
- Department of Chemistry, Semnan University Semnan 35351-19111 Iran +98 23 33654110 +98 23 31533199
| | - Atekeh Tarahhomi
- Department of Chemistry, Semnan University Semnan 35351-19111 Iran +98 23 33654110 +98 23 31533199
| | - Marjan Sadat Bozorgvar
- Department of Chemistry, Semnan University Semnan 35351-19111 Iran +98 23 33654110 +98 23 31533199
| | - Dan G Dumitrescu
- XRD2 beamline, Elettra - Sincrotrone Trieste S.C.p.A. 34149 Basovizza Trieste Italy
| | - Arie van der Lee
- Institut Européen des Membranes, IEM, UMR-5635, Université de Montpellier, ENSCM, CNRS, Place Eugéne Bataillon 34095 Montpellier cedex 5 France
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Pal S, Tarafdar A, Sinha A, Bhunia A, Harms K, Nayek HP. Mononuclear metal (II) complexes of a Bis(organoamido)phosphate ligand with antimicrobial activities against Escherichia coli. Appl Organomet Chem 2017. [DOI: 10.1002/aoc.3821] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Souvik Pal
- Department of Applied Chemistry; Indian Institute of Technology (Indian School of Mines); Dhanbad 826004 Jharkhand India
| | - Abhrajyoti Tarafdar
- Department of Environmental Science and Engineering; Indian Institute of Technology (Indian School of Mines); Dhanbad 826004 Jharkhand India
| | - Alok Sinha
- Department of Environmental Science and Engineering; Indian Institute of Technology (Indian School of Mines); Dhanbad 826004 Jharkhand India
| | - Asamanjoy Bhunia
- Department of Chemistry-Ångström Laboratory; Uppsala University; P.O. Box 523 75120 Uppsala Sweden
| | - Klaus Harms
- Fachbereich Chemie; Philipps Universität Marburg; Hans Meer-wein Strasse Marburg Germany
| | - Hari Pada Nayek
- Department of Applied Chemistry; Indian Institute of Technology (Indian School of Mines); Dhanbad 826004 Jharkhand India
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Gupta AK, Reddy SAD, Rajasekar P, Prakash P, Boomishankar R. Chloro-Bridged Hexanuclear Pd(II) Clusters Supported by cis
-Blocking Tris(imido)phosphate Trianions. ChemistrySelect 2017. [DOI: 10.1002/slct.201701770] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Arvind K. Gupta
- Department of Chemistry; Indian Institute of Science Education and Research (IISER), Pune; Dr. Homi Bhabha Road Pune - 411008 India
| | - Shada Arun Dixith Reddy
- Department of Chemistry; Indian Institute of Science Education and Research (IISER), Pune; Dr. Homi Bhabha Road Pune - 411008 India
| | - Prabhakaran Rajasekar
- Department of Chemistry; Indian Institute of Science Education and Research (IISER), Pune; Dr. Homi Bhabha Road Pune - 411008 India
| | - Prabhat Prakash
- Department of Chemistry; Indian Institute of Science Education and Research (IISER), Pune; Dr. Homi Bhabha Road Pune - 411008 India
| | - Ramamoorthy Boomishankar
- Department of Chemistry; Indian Institute of Science Education and Research (IISER), Pune; Dr. Homi Bhabha Road Pune - 411008 India
- Centre for Energy Sciences; Indian Institute of Science Education and Research (IISER), Pune; Dr. Homi Bhabha Road Pune - 411008 India
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Sabbaghi F, Pourayoubi M, Farhadipour A, Ghorbanian N, Andreev PV. A novel tubular hydrogen-bond pattern in a new diazaphosphole oxide: a combination of X-ray crystallography and theoretical study of hydrogen bonds. ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY 2017; 73:508-516. [PMID: 28677601 DOI: 10.1107/s205322961700794x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Accepted: 05/29/2017] [Indexed: 11/10/2022]
Abstract
In the structure of 2-(4-chloroanilino)-1,3,2λ4-diazaphosphol-2-one, C12H11ClN3OP, each molecule is connected with four neighbouring molecules through (N-H)2...O hydrogen bonds. These hydrogen bonds form a tubular arrangement along the [001] direction built from R33(12) and R43(14) hydrogen-bond ring motifs, combined with a C(4) chain motif. The hole constructed in the tubular architecture includes a 12-atom arrangement (three P, three N, three O and three H atoms) belonging to three adjacent molecules hydrogen bonded to each other. One of the N-H groups of the diazaphosphole ring, not co-operating in classical hydrogen bonding, takes part in an N-H...π interaction. This interaction occurs within the tubular array and does not change the dimension of the hydrogen-bond pattern. The energies of the N-H...O and N-H...π hydrogen bonds were studied by NBO (natural bond orbital) analysis, using the experimental hydrogen-bonded cluster of molecules as the input file for the chemical calculations. In the 1H NMR experiment, the nitrogen-bound proton of the diazaphosphole ring has a high value of 17.2 Hz for the 2JH-P coupling constant.
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Affiliation(s)
- Fahimeh Sabbaghi
- Department of Chemistry, Zanjan Branch, Islamic Azad University, Zanjan, Iran
| | - Mehrdad Pourayoubi
- Department of Chemistry, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran
| | | | | | - Pavel V Andreev
- Department of Physics, N. I. Lobachevsky State University of Nizhni Novgorod, 603950 pr. Gagarina, 23-3 Nizhni Novgorod, Russian Federation
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Cationic and neutral copper(I) iodide cluster MOFs derived from tridentate N-donor functionalized P(V) ligands: synthesis, structure and photophysical properties. J CHEM SCI 2017. [DOI: 10.1007/s12039-017-1284-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Huang TH, Yang H, Yang G, Li Y, Huang LL. Synthesis, structures and properties of Ag+ complexes containing polyphosphine ligands with extended Ag⋯C, N-O⋯π and C-H⋯π interactions. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.03.059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Rufanov KA, Pruß NK, Sundermeyer J. Simple entry into N-tert-butyl-iminophosphonamide rare-earth metal alkyl and chlorido complexes. Dalton Trans 2016; 45:1525-38. [DOI: 10.1039/c5dt03721b] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
New series of rare-earth metal dialkyls [(NPNtBu)Ln(CH2SiMe3)2(THF)n] (Ln = Sc,n= 0 (2), Ln = Y,n= 1 (3)) and monoalkyls [(NPNtBu)2Ln(CH2SiMe3)] (Ln = Y (4), Nd (6), Sm (7)), [(NPNtBu)2Sc(THF)CH3] (5) are achieved by protolysis of highly basic ligand Ph2P(N-tBu)(NH-tBu) = (NPNtBu)H (1). Further alkyl abstraction, alkyl/Cl exchange reactions and X-ray structure analyses of thus obtained new complexes are presented.
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Affiliation(s)
- Konstantin A. Rufanov
- Department of Chemistry
- M.V. Lomonosov State University of Moscow
- 119991 Moscow
- Russian Federation
| | - Noa K. Pruß
- Fachbereich Chemie der Philipps-Universität Marburg
- 35032 Marburg
- Germany
| | - Jörg Sundermeyer
- Fachbereich Chemie der Philipps-Universität Marburg
- 35032 Marburg
- Germany
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GUPTA ARVINDK, SRIVASTAVA ANANTKUMAR, BOOMISHANKAR RAMAMOORTHY. A tetrakis(amido)phosphonium cation containing 2-pyridyl (2Py) substituents,[P(NH2Py)4]+ and its reactivity studies with Ag(I) salts. J CHEM SCI 2015. [DOI: 10.1007/s12039-015-0818-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Discrete and Polymeric Coordination Assemblies Derived from 3-Pyridyl Attached Flexible Phosphoric Triamide Ligand and Copper Salts. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES INDIA SECTION A-PHYSICAL SCIENCES 2014. [DOI: 10.1007/s40010-014-0135-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Pal S, Jana PP, Nayek HP. Mononuclear complexes and a coordination polymer of the 2-pyridylamino (NH2Py) functionalized P(v) ligand. RSC Adv 2014. [DOI: 10.1039/c4ra02258k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Gupta AK, Reddy SAD, Boomishankar R. Facile formation of stable tris(imido)phosphate trianions as their tri- and hexanuclear Pd(II) complexes in protic solvents. Inorg Chem 2013; 52:7608-14. [PMID: 23750700 DOI: 10.1021/ic400686e] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Employing Pd(OAc)2, a facile deprotonation route to access the highly basic tris(alkylimido)phosphate trianions, [(RN)3PO](3-) (R = (t)Bu, (c)Hex, or (i)Pr), analogous to the orthophosphate (PO4(3-)) ion in polar and in protic solvents has been achieved. Trinuclear and prismatic Pd(II) clusters of these imido trianions having the formula {Pd3[(NR)3PO](OAc)3}n (n = 1 or 2) or as mixed-bridged clusters of the type {Pd3[(N(i)Pr)3PO](OAc)2(OR')}2 (R' = Me or H) were isolated exclusively in all these reactions in which the trianionic species acts as a tripodal chelating ligand to the trinuclear Pd3 unit. Reactivity studies aiming at the Pd(II) atoms in these clusters with nucleophilic reagents, such as primary amines (R″NH2), have led to a new trimeric cluster with the formula {Pd3[(NR)3PO](OAc)3(R″NH2)3} in which the tripodal coordination of the Pd-Nimido moieties remained unaffected, exemplifying the robustness of the Pd3 unit in all these clusters. We have also shown the catalytic activity of these Pd(II) complexes in Mizoroki-Heck type coupling reactions in the presence of Cu(OAc)2.
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Affiliation(s)
- Arvind K Gupta
- Department of Chemistry, Mendeleev Block, Indian Institute of Science Education and Research (IISER), Pune, Dr. Homi Bhabha Road, Pune 411008, India
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Kang Y, Liu Q, Yin W, Zhang W, Liu P. 3D Ni(II)/Cu(II) Supermolecular Frameworks Based on Pyridylamine and Fumarate Co-ligands Containing a Trinodal (4,5,6)-Connected Network and a (H2O)16Water Cluster. CHINESE J CHEM 2013. [DOI: 10.1002/cjoc.201200851] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Gupta AK, Nagarkar SS, Boomishankar R. Zn(ii) coordination polymer of an in situ generated 4-pyridyl (4Py) attached bis(amido)phosphate ligand, [PO2(NH4Py)2]− showing preferential water uptake over aliphatic alcohols. Dalton Trans 2013; 42:10964-70. [DOI: 10.1039/c3dt51123e] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Gupta AK, Steiner A, Boomishankar R. Tri-, hepta- and octa-nuclear Ag(i) complexes derived from 2-pyridyl-functionalized tris(amido)phosphate ligand. Dalton Trans 2012; 41:9753-9. [DOI: 10.1039/c2dt30241a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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