Protein aggregation monitoring in cells under oxidative stress: a novel fluorescent probe based on a 7-azaindole-BODIPY derivative

The development of new fluorescent probes as molecular sensors is a critical step for the understanding of molecular mechanisms. BODIPY-based probes offer versatility due to their high fluorescence quantum yields, photostability, and tunable absorption/emission wavelengths. Here, we report the synthesis and evaluation of a novel 7-azaindole-BODIPY derivative to probe hydrophobic proteins as well as protein misfolding and aggregation. In organic solvents, this compound shows two efficiently interconverting emissive excited states. In aqueous environments, it forms molecular aggregates with unique photophysical properties. The complex photophysics of the 7-azaindole-BODIPY derivative was explored for sensing applications. In the presence of albumin, the compound is stabilized in hydrophobic protein regions, significantly increasing its fluorescence emission intensity and lifetime. Similar effects occur in the presence of protein aggregates but not with other macromolecules like pepsin, DNA, Ficoll 40, and coconut oil. Fluorescence lifetime imaging microscopy (FLIM) and two-photon fluorescence microscopy on breast (MCF-7) and lung (A549) cancer cells incubated with this compound display longer fluorescence lifetimes and higher emission intensity under oxidative stress. Synchrotron FTIR micro spectroscopy confirmed that the photophysical changes observed were due to protein misfolding and aggregation caused by the oxidative stress. These findings demonstrate that this compound can serve as a fluorescent probe to monitor protein misfolding and aggregation triggered by oxidative stress.

Synthesis of New Bodipy Hydrazide Fluorescent Probes for the Detection of Carbonylated Proteins Generated by Oxidative Stress

Oxidative stress is a cellular disorder implicated in various severe diseases and redox biology and represents an important field of research for the last decades. One of the major consequences of oxidative stress is the carbonylation of proteins, which is also a reliable marker to assess protein oxidative modifications. Accumulation of carbonylated proteins has been associated with aging and age-related diseases and can ultimately causes cell death. Detection of these oxidative modifications is essential to understand and discover new treatments against oxidative stress. We describe the design and the synthetic pathway of new BODIPY fluorescent probes functionalized with hydrazide function for protein carbonyl labeling to improve existing methodologies such as 2D-Oxi electrophoresis. Hydrazide BODIPY analogues show very good fluorescent properties such as NIR emission up to 633 nm and quantum yield up to 0.88. These new probes were validated for the detection and quantification of carbonylated proteins with 2D-Oxi electrophoresis using mouse muscle protein extracts, as well as both flow cytometry and microscopy using oxidant stressed C2 C12 cells.

Tracking the Intramolecular Charge Transfer Process of 2,6-Substituted D-A BODIPY Derivatives

Three 2,6-electron donor-substituted boron dipyrromethene (BODIPY) exhibiting an intramolecular charge transfer (ICT) character with large Stokes shift and moderate fluorescence quantum yields were designed and synthesized. Broadband femtosecond transient absorption (fs-TA) spectroscopy measurements were performed to directly detect the CT state in nonpolar or less polar solvents and the charge separation (CS) state in more polar solvents. A solid foundation for the fs-TA assignment can be found in electrolysis experiments. In addition, the ICT character of the newly designed compounds was investigated by density functional theory (DFT) calculations. Meanwhile, the reference compounds without the donor groups were synthesized, and their photophysical behaviors and ultrafast time-resolved spectra confirmed that no ICT process occurred regardless of the nature of the solvent. This work emphasizes the importance of decorating the BODIPY core with electron-donating substituents at 2,6-positions to efficiently adjust its photofunctional behaviors demonstrating the ICT character. Importantly, the photophysical processes could be easily regulated by changing the solvent with different polarities.

Coherent internal conversion from high lying electronic states to S1 in boron-dipyrromethene derivatives

Internal conversion is the first step after photoexcitation to high lying electronic states, and plays a central role in many photoinduced processes. In this report, we demonstrate a truly ultrafast internal conversion (IC) in large molecules by time-resolved fluorescence (TF). Following photoexcitation to the S_n (n ≥ 2) state, TF of the S₁ state was recorded for two boron-dipyrromethene (BODIPY) derivatives in solution. IC to S₁ takes place nearly instantaneously within 20 fs for both molecules. Abundant nuclear wave packet motions in the S₁ state are manifest in the TF signals, which demonstrates that the IC in these BODIPY molecules is coherent with respect to most of the vibrational modes. Theoretical calculations assuming impulsive IC to S₁ account for the wave packet dynamics accurately.

Quantitative Structure-Property Relationship Modelling for the Prediction of Singlet Oxygen Generation by Heavy-Atom-Free BODIPY Photosensitizers*

Heavy-atom-free sensitizers forming long-living triplet excited states via the spin-orbit charge transfer intersystem crossing (SOCT-ISC) process have recently attracted attention due to their potential to replace costly transition metal complexes in photonic applications. The efficiency of SOCT-ISC in BODIPY donor-acceptor dyads, so far the most thoroughly investigated class of such sensitizers, can be finely tuned by structural modification. However, predicting the triplet state yields and reactive oxygen species (ROS) generation quantum yields for such compounds in a particular solvent is still very challenging due to a lack of established quantitative structure-property relationship (QSPR) models. In this work, the available data on singlet oxygen generation quantum yields (ΦΔ ) for a dataset containing >70 heavy-atom-free BODIPY in three different solvents (toluene, acetonitrile, and tetrahydrofuran) were analyzed. In order to build reliable QSPR model, a series of new BODIPYs were synthesized that bear different electron donating aryl groups in the meso position, their optical and structural properties were studied along with the solvent dependence of singlet oxygen generation, which confirmed the formation of triplet states via the SOCT-ISC mechanism. For the combined dataset of BODIPY structures, a total of more than 5000 quantum-chemical descriptors was calculated including quantum-chemical descriptors using density functional theory (DFT), namely M06-2X functional. QSPR models predicting ΦΔ values were developed using multiple linear regression (MLR), which perform significantly better than other machine learning methods and show sufficient statistical parameters (R=0.88-0.91 and q2 =0.62-0.69) for all three solvents. A small root mean squared error of 8.2 % was obtained for ΦΔ values predicted using MLR model in toluene. As a result, we proved that QSPR and machine learning techniques can be useful for predicting ΦΔ values in different media and virtual screening of new heavy-atom-free BODIPYs with improved photosensitizing ability.

Bimetallic cyclometalated iridium complexes bridged by a BODIPY linker

Presented here is a new class of supramolecular cyclometalated Ir(iii) complexes. The 2 : 1 assemblies include two phosphorescent cyclometalated Ir(iii) centers spanned by a BODIPY bridge with pyridine substituents at the β-pyrrole positions. The three complexes, which vary with respect to the cyclometalating ligand on iridium, are prepared via a simple one-pot procedure, with the target complexes isolated in 31-75% yield. The photophysics of these new compounds are described in detail. All complexes are strongly photoluminescent, with fluorescence from BODIPY being the dominant emission pathway. One member of the series has a near-unity photoluminescence quantum yield, significantly enhanced relative to the free BODIPY. The cyclometalating ligand on iridium controls the energy of the Ir-centered triplet excited state, but in all cases energy transfer from the Ir centers to the BODIPY quenches almost all phosphorescence. This work outlines a new, simple synthetic method for accessing supramolecular complexes.

Water-soluble chiral tetrazine derivatives: towards the application of circularly polarized luminescence from upper-excited states to photodynamic therapy

A new family of water-soluble chiral tetrazine derivatives 1 and 2 is reported. Spectroscopic studies reveal that the derivatives violate Kasha's rule and emit from their upper-excited states (S n , n > 1). The transition assignments are supported by time-dependent density functional theory calculations. More importantly, both chromophores exhibit anisotropy factors on the order of ∼10-3 to 10-4 for circular dichroism and circularly polarized luminescence (CPL) from upper-excited states. Additionally, the nonplanar geometry of the derivatives induces a significant yield of triplet excited states. Transient absorption spectroscopic measurements reveal high triplet quantum yields of ∼86% for 1 and ∼81% for 2. Through in vitro studies, we demonstrate that the derivatives can be used as photodynamic therapy (PDT) agents, providing a highly efficient form of cancer therapy. This study is the first demonstration of simple organic molecules with CPL from upper-excited states and efficient PDT.

Organic Dye-Catalyzed, Visible-Light Photoredox Bromination of Arenes and Heteroarenes Using N-Bromosuccinimide

A variety of arenes and heteroarenes are brominated in good to excellent yields using N-bromosuccinimide (NBS) under mild and practical conditions. According to mechanistic investigations described within, the reaction is speculated to proceed via activation of NBS through a visible-light photoredox pathway utilizing erythrosine B as a photocatalyst. A photo-oxidative approach effectively amplifies the positive polarization on the bromine atom of the NBS reagent. This increase in the electrophilic nature of NBS results in drastically reduced reaction times and diversion from competing light-promoted reactive pathways.

Near-Infrared S2 Fluorescence from Deprotonated Möbius Aromatic [32]Heptaphyrin

This study revealed S₂ fluorescence from deprotonated meso-pentafluorophenyl-substituted Möbius aromatic [32]heptaphyrin(1.1.1.1.1.1.1) that was formed upon treatment of neutral antiaromatic [32]heptephyrin with tetrabutylammonium fluoride. Higher excited-state dynamics and emission were studied by fs-transient absorption spectroscopy and a broad-band fluorescence upconversion technique. This is the first S₂ fluorescence from chromophores with twisted Möbius topology, and the observation of S₂ fluorescence in the near-infrared region has been unprecedented. The higher excited-state dynamics of neutral and deprotonated [32]heptaphyrins were compared by ultrafast transient absorption spectroscopy to understand the S₂ fluorescence origin. In the antiaromatic [32]heptaphyrin, a fast time component of 65 fs was assigned as an internal conversion process from the S_B state to the S_Q state, which occurs prior to relaxation to the optically dark, lowest electronic state (S_D). Therefore, the S_Q state of the antiaromatic [32]heptaphyrin acts as a trap state intervening radiative transitions from the S_B state to the S₀ state. In deprotonated [32]heptaphyrin, the internal conversion from the S_B state to the S_Q state proceeds with a slower time constant of 150 fs for owing to its rigid structure, helping the observation of its S₂ fluorescence.

Ultrafast Solvation Dynamics and Vibrational Coherences of Halogenated Boron-Dipyrromethene Derivatives Revealed through Two-Dimensional Electronic Spectroscopy

Boron-dipyrromethene (BODIPY) chromophores have a wide range of applications, spanning areas from biological imaging to solar energy conversion. Understanding the ultrafast dynamics of electronically excited BODIPY chromophores could lead to further advances in these areas. In this work, we characterize and compare the ultrafast dynamics of halogenated BODIPY chromophores through applying two-dimensional electronic spectroscopy (2DES). Through our studies, we demonstrate a new data analysis procedure for extracting the dynamic Stokes shift from 2DES spectra revealing an ultrafast solvent relaxation. In addition, we extract the frequency of the vibrational modes that are strongly coupled to the electronic excitation, and compare the results of structurally different BODIPY chromophores. We interpret our results with the aid of DFT calculations, finding that structural modifications lead to changes in the frequency, identity, and magnitude of Franck-Condon active vibrational modes. We attribute these changes to differences in the electron density of the electronic states of the structurally different BODIPY chromophores.

S2 Fluorescence from [26]Hexaphyrin Dianion

S₂ fluorescence from meso-hexakis(pentafluorophenyl)-substituted [26]hexaphyrin dianion was observed as the first example of expanded porphyrins despite its large molecular size and small HOMO-LUMO gap. The population kinetics among S₂, S₁, and S₀ states have been studied by using femtosecond time-resolved absorption and fluorescence spectroscopies. Broad-band fluorescence upconversion spectroscopy allowed for simultaneous observation of S₂ fluorescence decay in the visible region and S₁ fluorescence rise in the NIR region, both with a time constant of 0.22 ps. The transient absorption spectroscopy revealed the presence of a direct decay path from the S₂ state to the S₀ state. The observation of S₂ fluorescence from highly conjugated molecular systems is quite rare, and S₂ fluorescence beyond 700 nm is also quite rare.

Nonlinear refraction and absorption activity of dimethylaminostyryl substituted BODIPY dyes

Optical and nonlinear optical properties of difluoroboradiazaindacene (BODIPY) models with attached dimethylaminostyryl substituents were studied.

Ultrafast dynamics of a new class of highly fluorescent boron difluoride dyes

The first ultrafast study of the dimeric fluorescent BF₂ dye BOPHY is presented.

BODIPY functionalized o-carborane dyads for low-energy photosensitization

Bodipy-o-carborane dyads undergo a photo-induced electron transfer (PET) process under low energy visible light sensitization and their PET efficiencies are in the 63–71% range.

Enhanced S2 emission in carbazole-based ionic liquids

Energy level diagram for carbazoleimidazolium based ionic liquids.

A detailed investigation of light-harvesting efficiency of blue color emitting divergent iridium dendrimers with peripheral phenylcarbazole units

The increase in phosphorescence efficiency was estimated by the energy transfer mechanism for divergent iridium dendrimers with peripheral phenylcarbazole units. A series of Ir-core/phenylcarbazole-end dendrons of the type, Ir(dfppy)2(pic-Czn) (Gn, n = 0, 1, 2, and 3), was synthesized, where dfppy, pic, and Czn (n = 2, 4, and 8) are 2-(4,6-difluorophenyl)pyridine, picolinate substituted with Czn at the 3-position, and 4-(9-carbazolyl)phenyldendrons connected with 3,5-di(methyleneoxy)benzyloxy branches, respectively. Selective excitation of the Czn units of G1–G3 resulted in >90% quenching of the Cz fluorescence accompanied by the growth of phosphorescence from the Ir(dfppy)2(pic) core as a consequence of energy transfer from the excited-singlet Czn chromophore to the core. The rate constants of energy transfer were determined by steady-state and transient spectroscopic measurements to be 4.32 × 10(9) s(−1) (G1), 2.37 × 10(9) s(−1) (G2), and 1.46 × 10(9) s(−1) (G3), which were in good agreement with those calculated using the Förster model. The phosphorescence enhancements were 157 (G1), 213 (G2), and 264% (G3) when compared to the phosphorescence of the core Ir(dfppy)2(pic-Ph2) (G0), in which pic-Ph2 is 3-(3,5-dibenzyloxybenzyl)picolinate.

Original Design of Fluorescent Ligands by Fusing BODIPY and Melatonin Neurohormone

An original design and synthesis of fluorescent ligands for melatonin receptor studies is presented and consists in the fusion of the endogenous ligand with the fluorescent BODIPY core. Probes I-IV show high affinities for MT1 and MT2 melatonin receptors and exhibit fluorescence properties compatible with cell observation.

A study on the photophysics of 9-amino-10-cyanoanthracene: probing its dual absorption and emission behavior

This study explores the photophysics of an interesting donor–acceptor substituted molecule, 9-amino-10-cyanoanthracene, that shows unusual dual absorption and emission behavior.

Antenna effects in truxene-bridged BODIPY triarylzinc(ii)porphyrin dyads: evidence for a dual Dexter–Förster mechanism

BODIPY uses the truxene bridge to transfer its S₁ energy to the zinc(ii)porphyrin acceptors via a Dexter mechanism almost exclusively.

Photoinduced reduction of manganese(III) meso-tetrakis(1-methylpyridinium-4-yl)porphyrin at AT and GC base pairs

The photoreduction of water-soluble cationic manganese(III) meso-tetrakis(1-methylpyridium-4-yl)porphyrin (Mn(III)(TMPyP)(4+)) bound to a synthetic polynucleotide, either poly[d(A-T)2] or poly[d(G-C)2], was examined by conventional absorption and circular dichroism (CD) spectroscopy, transient absorption, and transient Raman spectroscopy. Upon binding, Mn(III)(TMPyP)(4+) produced a positive CD signal for both polynucleotides, suggesting external binding. In the poly[d(A-T)2]-Mn(III)(TMPyP)(4+) adduct case, an interaction between the bound porphyrin was suggested. The transient absorption spectral features of Mn(III)(TMPyP)(4+) in the presence of poly[d(A-T)2] and poly[d(G-C)2] were similar to those of the photoreduced products, Mn(II)(TMPyP)(4+), whereas Mn(III)(TMPyP)(4+) in the absence of polynucleotides retained its oxidation state. This indicated that both poly[d(A-T)2] and poly[d(G-C)2] act as electron donors, resulting in photo-oxidized G and A bases. The transient Raman bands (ν2 and ν4) that were assigned to porphyrin macrocycles exhibited a large downshift of ~25 cm(-1), indicating the photoreduction of Mn(III) to Mn(II) porphyrins when bound to both polynucleotides. The transient Raman bands for pyridine were enhanced significantly, suggesting that the rotation of peripheral groups for binding with polynucleotides is the major change in the geometry expected in the photoreduction process. These photoinduced changes do not appear to be affected by the binding mode of porphyrin.